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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100112g2.5458.mrna |
| Orig protein id | gnl|cribi|Naga_100112g2.5458 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:970598..973193 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1016 ID=rna1016|Name=rna1016|organism=Nannochloropsis gaditana|type=mRNA|length=4329bp
ACACCCACAATTTCGCCGTTTATAACGTCTTAAATGCTTCTTGCTCGATG
GATAAACATTCGAGCCGTTGGCTCTGGAGACGCTCTTTCGCTTTGTCCTC
TGGCGTCGTATCTCACTTTTTGCCTTCCTTCTCATTCTCCTCTTGCCATC
GTTGAGGCCATAAAATGTAGTTTGACTATGTATACATATCATAAATGGCT
GTTTATTTGTGTACTCTACGAATCAAATCGTGACTCAGACTTTTGCCCCC
ATGATTGCCCTAAATAAAATCAGCCGTTGCGTACATGCCCTTTTCCGCAG
CGTTCTCCCCTGTCCTATGACGTCGATGCCGTCCCATGTCCAAAAGACGA
ATACATGCCAAAATTCTTACGATTTTCACACTGATATTGAGAGGCTCCCT
ATCTTCCATTGATCATACATAATCAGTTCTCCTGGGGCACGGTGTCACAA
GCGGTGGACCGACTTGCTCACGCAGGGACATTTGAATAGGCGCTCAAGTT
GTTTGCCGGTCGTGTGTGAGTGGGGCGCAGAAATTTATACAGAACTAATT
GAAGCATGCAGCGGAGTGTACCACACGTACCAGTCACTCCACCCTCGGCG
ATGGAGGACGACGCAGCTTTCGAGAGCTTTTCTTGCCCGATCACGGGCTC
TCTAATGGAAGACCCTGTCATGACAGTAGGTGACGGGCATACCTACGAGC
GCTACGCTATCGAGGAATGGTTCCGAAGAAACCATCGCACGTCCCCACTG
ACAGGTGCACCCTTACTAAATTTGTCGCTTGTTGGGAACATAACCCTGCG
AAATGCGATCGAGGAGTATCGAGCGAGTATCGACAAATTGCAGTCACCGG
GTCGCATCACTAGCCCTGGTAAGGAGAAGCGTCTGGCTCTGGCGAAGGCC
TTGGACGCTCGGGAGGTGCGTATGGGCGAGATTCGACTCGTCTCGCAAAA
ATTAGAGGACGACATGGTGATAGAAAGTGAAGAAGACCGGGAAGATATAT
GCTTTTGGCTACGAACACGGACGATGCTGTCTCACGAAGCGGTTGTCGAG
TACGTCGAGCTGCTGGCTCGCGAAGGCGCCACAAGCATGAGTTTCTTGAG
GGATGCGGACTACTCACGGCGAGAACTCATTGACTTGGGAGTGCGAGTTC
CTCATGTTGCAAGTCTGCATCGTATCGTGGACGAATACTGCGGGCGGGAG
ATGGGGAGCATAGGCGGATCGCCTTCGGGGCGGGAGGAGGGACCTGTGAC
GCCAGACGCTGCTGGCGCCACCGCTTTGGCCAGTGCTCTTCGCACGGTTG
TAAGCAATGCGACAGTCGATCGCAACCATCCCCTCGTAAATGCTCTGAAC
CGGTGCGGGCTGCGCCTGAGCATGGACAATGGGCCGATCACGTCTTTCAT
GCTCCTGGTCAAGGCCCTGAAGATGGTGCAAGGGAGCGCGGCGATTGCGA
CGGCCGGCCTGGAGGTGATGCGGACGCTTGGCCGGGATGAGGGCCATCGG
AGGGCATTCGGAGAGGTGGGGGCTTGCGAGGTGGTCGTGCCCCAGATGCG
CGCCTTCCCGCAGGAACCGTCTGTGGCAGCAGAGGGTTGTTGGGCGATCC
GGAACATGGCGATCGACGACAGCCTAGCGGCGATTCTTGCCGCCTACGAT
GCATGCCAAGCAGTTGTGACGGCCATGACCTCCTTTCCTCGGCACAAGTC
AACGCAAGAACAGGCCGCCGCCGCCATTGTGAATTTGGGCGGGAACAATC
GAGAGCTGAAGCGGGCATTGGCCAGCGCGGGCGCCACCCGAGCCATCATG
GAGTCCATGCGTGAGTGGCCCTCGGACCCCGACGTGCTGAAACAGTGCTG
CTGGGCAATTTTGACCCTGGCCGTGGATGACGAGATCGCCCGCCGGCTTT
TCAGCGAGGGATCGTGCGAAGCAGTGGTTGCTGCCATGCGAGCCTGTCCC
ACCGACCGACTCGTCCTCACTAAGGCCTGCGCGGCGATCGTGAACTTGAG
CGGCGGCAACCAAACCATCAAGACCTCTTTCGGGGCCATGGGCGCCTGCG
ACGAGGTCATTCGCGCCATGCGGGCCTTTCCCCGGGATGGTCCCCTTCAA
AAGCAAGTGTGCTGGGCCATGAAGAATTTGGCAGGAGCGAACGACCCCAA
CCGGAAGCGGTTCGCGCCTGGATTGGACGGAGTGGTGCTTGCGGTGCGCA
ATTTCGGGGCGGACCGCGACGTGGCGGAGCAGGCCCTGGGTGCTCTGAGG
ACCTTGGCGGTCGACGACGAGAACGCCCGGTCGTTCGGAGAGCTGGGGGC
CTGCGAGGTCGTGTGCTCCGCCATGCGCGCCCACCCCTCGATTGCCGGCA
TCCAGGTTCAGTCGTGTGGCTCCATTATCAACTTGTGCGGCAACAATCCG
GAGAACCGAAAACGACTAGCGAACATGGGTGCTTGCGAGCTGGTGGCCGC
GGCGCTGCGCAACCACCGCACGGACCGCGGGGTAAACGAGCAGGCTTGCT
GGGCAGTGACCTCACTCGGGGTCTCCACGCCCGAAAACCGCCGAAAGTTG
GGCGAGGCGGGTGTCTGCCAGTGCATTGTTGCAACCTTACGCACATTTCA
CGCGGATAGACCTGTGGTGGAGCAGGCGGTCTCGGCTGTACGTAACCTGG
CCATCGAGGAGGAGAATACCCGGAAGCTCGGCTCCGAGGGAGCCTGCGAC
GCGATCGTCATGGTCATGCGGGCCTACCCAGGCGAGGCCACCTTTCAGTC
CAAGGCCTGCGCCGCTGTCGTAAATCTGGCAGGAGGCAACTCGGACAACA
AACGCAAGCTTGGCTTGGGGGGAGCGGTACAAGCGGTGGTGGCGGCGCTG
AAGGCCTTCCCAACCGATGCCTCTGTGACCGAACAAGGGCTATGGGCCAC
GAAGAATATGGCTGTGGATGCTGAGAACACCGTCTTGTTCGGCAACGTAG
GCATCTGTGAGGTGATCGTCGCGGCTTTGCGAACATTCCAACAGGAGTCT
CGGGTCCTGATCCAGGCGCTGGCTGCTGCGGTGAACTGTTCCGGCGGCAA
CGACGAGAACAAAAGAAGGCTGGGCAGTCTTGGAGCCTGTCAAGAAATTA
TCCGATCTATGCAATCCTTTCCCACCAACGCCACCGTCCAACTGCAGGCG
TGCTGGTGCATCAAGAATATCTCCAACAACAGCGACGAGAACAAGAGAAA
ATTCGGGCCCGTATCCGGAGAGATGGTGGTGGCGGCGTTGAGGGCTTTTC
CGACGGACGAGGGGATCTTAAGAGAGGGCAAGGCTGCCCTGCGAAATTTG
AGCAATAACAACGCTGAGAACCGAGCGCGGATCGAATCGTTGAATTATCG
CGACCATTTAATCCGGTCGTCGCCCTTTTCGAGCAAATGACTCGAGGTCC
CCTCTAGCGGCGTCCCAGAGAAGCCTGGGTCGGAGGAAAAGAGGCAACAG
CGTGAGGGAGCAGTGCTTCGCACTTATCTTTTGCGACTCGTACGGGCCGG
AGCGGAGAAGGAGCAGGGTTTGCGAGAAGGGGCCGCGAATCAGGAAACTC
AAGAGGAGGGTCACTAGGCGTTGGAAGGGAGGCTCGAGGCTGACCAGCAA
CGGGTAATGTTAACAGCATCACATAGGTGAATAGACGATGAAATGGAGGT
ACGGGTCGCCGAGGGACTTTAAGTCTCCTTGGATGCCCTGCCTCGTTCAC
TAGGCACGCGTCTGTAAAGGGAGCTTGAAGGACAAAGGATTTTTATAAAG
GCAGAAAACAGCGACAATCAACAATGACACCATCAAATTGTATTAATCCT
ACCTAAAGAAGCCCAAAGGGTAGTGTACATGACTGAAGTCTGCTCTTTTG
GCAACCACGATGGTGAAGTTTGAGACGCGAAAGACGGTAGGATCTGCGAG
GGGAAGACTTTGTAGGCTTGCGTCTATGGCGTGCAGGTCCCCCTTTTGCA
CTCTATTGCGATAGAGAGCTCTTTTCTGCCATCAGTCTTCAATTCCTTGA
GATGTGAATGCTGCTGAGGGGTAGAGAGTCCTATCTGGAGCAAACCGGGG
GGGCGGAGAGACGGTCATGCACCTGAACTCCAAGAACTATGTGTCGGAAT
GAGGTGTGCTTGCGTATGTCCTTCTCACATAGGAAATATAAGTGGGAGAA
GCAGCCTGCTTGCGTGCTTTTGATGGCATAGAGATAGAGAGCTGGACAAG
TATGCATGAGAAAGAGGAATCGTTGAAGGTCCTGGGAGGCATTTGCCATT
GTGAGCGCGTTGCACGGAGAACTCCTCGCTCAAAGCGACTCTCTCCACCC
CCAAAGAAACTGTGTACTCCATCGTAAGC back to topprotein sequence of rna1016 >rna1016-protein ID=rna1016-protein|Name=rna1016|organism=Nannochloropsis gaditana|type=polypeptide|length=801bp
MGALDESSQDGGEEESVAKERDGAVSSLYASYFMTPESRLPINHPDHAYS
FLPLQSPGLVKAPGRGGRGLGRGAWETLPGLSGTSIVALDFSSALPGSPL
LAAALLLEKAGKEEGAVGPTRVLVHHSQTPATDPLPSLSSGLGDTSPDTR
SPASSLSSHRAGKRRVASEFNLASRAMASLPASPSARPHGRSPSAHGSLS
PGASPRLLRRRSDQQSHPLYPVGNVGPGRRANEPASSMRRLSSEAELRRT
WTQKPLHDPREPMPGSRVDEGDLGGRTAGLVAFNALGKSALRRHHSLGPD
RQADGARRAAAPPSGLASPSNQPRRALSLSSKSHLHRLHSAATTSQLQPT
QQQQQQPHQQFSHGRNRDISSLHFSRVRKLAGALKREGSLLAAMSLLSNE
ADIQETQFASPSTSLGVIGVMSPPSFSTTHLSSLNMAVLGGGEQIRKHQT
PGHSPHLDPSPSVSSPRSGTPPSTISFMQTSARPPGPGLGRGVPGREMGE
AISTVPCHDSCLQCQLNDRATEAPPVPALFPWAPLTAQINKTRDIADLCK
ANAHAMEQWGSSRGKELAKLWSMLFISASACLDALCVEATRLVTATVAGR
TSIALSSEALRPWRDGPLGRPLVEKLLTVYEKEGDVQTLATIVCVLDVEH
PGSLLQESKRAEYDRYLRAYAELLYRWGALETRAEVLKRLSVSSSASIST
EESKCVSMRRQDMVVALRCEACGSLDGGVDAGTGVCQKCKMFAFRCVICQ
LAVRGQSMFCLNCSHGGHTPHVWDWFIENDMCASGCGCRCFFGQSVEIQC
K back to topmRNA from alignment at CM002456.1:970598..973193- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna1016 ID=rna1016|Name=rna1016|organism=Nannochloropsis gaditana|type=mRNA|length=2596bp|location=Sequence derived from alignment at CM002456.1:970598..973193- (Nannochloropsis gaditana)
TCGGAAGCGAAGGGAACGGGCAGTGCATGGGGGCGTTGGACGAGAGCAGT
CAGGACGGCGGGGAGGAGGAAAGCGTTGCCAAGGAGAGGGACGGCGCGGT
TTCCTCCCTGTATGCCTCCTACTTCATGACCCCCGAGAGTCGGCTGCCCA
TCAACCACCCCGACCACGCGTACTCCTTCCTGCCATTGCAGTCGCCCGGG
CTTGTCAAAGCCCCGGGTAGGGGGGGGAGAGGACTCGGACGCGGCGCTTG
GGAGACCTTGCCGGGGCTGTCAGGGACGAGCATCGTCGCTCTGGATTTCT
CTAGTGCACTCCCAGGAAGCCCGCTGTTGGCGGCGGCGTTGCTCCTAGAG
AAGGCAGGGAAGGAGGAGGGGGCGGTGGGCCCGACGCGCGTGCTCGTCCA
CCACTCGCAGACGCCGGCCACGGACCCTCTGCCCTCCCTGTCCTCAGGCC
TCGGGGACACCAGTCCCGACACACGCAGCCCTGCCTCTTCCCTCTCCTCC
CACCGGGCGGGCAAGCGCCGTGTCGCCTCTGAGTTCAACCTAGCCTCTCG
CGCCATGGCCTCCCTGCCCGCGAGTCCCTCCGCCCGCCCGCACGGTCGGA
GCCCGAGCGCCCATGGCTCTCTGTCTCCGGGCGCCTCTCCGCGGTTGTTG
CGCCGCCGTTCGGACCAGCAATCCCATCCGTTGTACCCGGTGGGAAACGT
GGGGCCGGGTCGACGCGCGAATGAGCCTGCTTCCTCCATGCGACGCCTCT
CGTCGGAGGCCGAGCTGAGGCGCACGTGGACCCAGAAGCCGCTGCACGAC
CCGAGGGAGCCAATGCCAGGCAGCAGGGTGGACGAGGGGGACCTGGGAGG
ACGGACGGCTGGCCTGGTCGCATTCAACGCCTTGGGGAAAAGCGCGCTTC
GCCGGCACCACAGTCTGGGACCCGACCGACAGGCGGACGGAGCACGGAGA
GCCGCTGCCCCCCCGTCCGGCCTGGCCTCACCCTCGAACCAGCCACGGCG
AGCCCTCTCGCTCTCCTCGAAATCGCACCTACATCGCCTTCACTCCGCGG
CTACCACGTCTCAGTTACAGCCGACGCAGCAGCAGCAGCAGCAGCCTCAC
CAGCAGTTCTCACACGGGCGAAACCGTGACATCTCGAGCCTCCATTTCTC
CCGGGTCCGGAAGCTGGCCGGGGCTTTGAAGCGGGAGGGCTCCTTGTTGG
CGGCGATGTCTCTGCTTAGCAACGAGGCGGACATTCAAGAAACGCAGTTC
GCCTCCCCTTCAACCTCCCTCGGTGTTATCGGCGTAATGTCACCTCCTTC
GTTCTCGACGACACACCTATCTTCTCTCAATATGGCTGTTTTGGGTGGAG
GAGAGCAGATTCGCAAGCACCAGACACCGGGTCACTCCCCACACTTGGAT
CCATCTCCATCCGTTTCTTCGCCTCGCTCTGGCACCCCGCCCAGCACCAT
CTCGTTCATGCAAACGTCGGCGCGCCCCCCCGGCCCGGGCCTCGGCCGCG
GTGTCCCTGGGAGGGAAATGGGAGAAGCGATATCAACCGTGCCTTGTCAC
GACTCCTGCCTTCAGTGCCAGCTTAATGACAGGGCTACCGAAGCCCCCCC
GGTGCCTGCTTTGTTCCCCTGGGCCCCTTTGACGGCGCAAATCAACAAGA
CCCGCGATATTGCCGACCTCTGCAAAGCCAACGCGCACGCGATGGAGCAG
TGGGGTTCCTCTCGTGGGAAGGAGTTAGCCAAGCTTTGGTCAATGCTCTT
CATTTCCGCCTCCGCCTGTTTGGATGCCTTGTGTGTAGAAGCAACACGCT
TGGTGACCGCGACAGTCGCCGGCCGCACGTCTATCGCGCTTTCCTCAGAG
GCTTTGCGGCCTTGGAGGGATGGACCATTGGGACGGCCGCTGGTTGAGAA
ACTCTTGACAGTATACGAGAAGGAAGGAGACGTTCAAACGCTGGCCACGA
TCGTATGTGTGCTTGACGTAGAGCATCCGGGCTCATTGCTTCAGGAAAGC
AAGCGCGCCGAGTATGATCGGTATTTGCGGGCCTACGCGGAGCTCCTTTA
CCGTTGGGGAGCTTTAGAGACGAGAGCAGAGGTTTTGAAAAGATTGTCTG
TATCGTCTTCCGCGTCGATATCTACAGAAGAATCTAAATGTGTGTCGATG
CGCCGGCAAGATATGGTGGTGGCATTGCGATGTGAAGCTTGCGGGAGCCT
TGATGGAGGAGTCGATGCGGGTACAGGTGTCTGTCAGAAGTGCAAGATGT
TCGCTTTTCGGTGCGTTATATGTCAGCTAGCGGTTCGCGGACAATCTATG
TTTTGTCTCAACTGCTCCCATGGTGGACACACTCCCCATGTGTGGGACTG
GTTCATAGAGAACGATATGTGCGCAAGTGGTTGTGGCTGTCGGTGTTTCT
TTGGTCAAAGCGTAGAAATCCAATGCAAATAGATGGTTGGGAGAATGGTA
GAAAAATAAGGGTGTTCAATGCGAGTAGGACAAAAGCATCAGGTAGCTTA
GGGTTTCCAACGTGTAAGGTATTCAAGCCCCTAAAGAAAGTCTTGCACAA
ATTTCATAAAACTCAGGATGTTTGCTCTCGATAATGGTGGCAGGTG back to topCoding sequence (CDS) from alignment at CM002456.1:970598..973193- >rna1016 ID=rna1016|Name=rna1016|organism=Nannochloropsis gaditana|type=CDS|length=2406bp|location=Sequence derived from alignment at CM002456.1:970598..973193- (Nannochloropsis gaditana)
ATGGGGGCGTTGGACGAGAGCAGTCAGGACGGCGGGGAGGAGGAAAGCGT
TGCCAAGGAGAGGGACGGCGCGGTTTCCTCCCTGTATGCCTCCTACTTCA
TGACCCCCGAGAGTCGGCTGCCCATCAACCACCCCGACCACGCGTACTCC
TTCCTGCCATTGCAGTCGCCCGGGCTTGTCAAAGCCCCGGGTAGGGGGGG
GAGAGGACTCGGACGCGGCGCTTGGGAGACCTTGCCGGGGCTGTCAGGGA
CGAGCATCGTCGCTCTGGATTTCTCTAGTGCACTCCCAGGAAGCCCGCTG
TTGGCGGCGGCGTTGCTCCTAGAGAAGGCAGGGAAGGAGGAGGGGGCGGT
GGGCCCGACGCGCGTGCTCGTCCACCACTCGCAGACGCCGGCCACGGACC
CTCTGCCCTCCCTGTCCTCAGGCCTCGGGGACACCAGTCCCGACACACGC
AGCCCTGCCTCTTCCCTCTCCTCCCACCGGGCGGGCAAGCGCCGTGTCGC
CTCTGAGTTCAACCTAGCCTCTCGCGCCATGGCCTCCCTGCCCGCGAGTC
CCTCCGCCCGCCCGCACGGTCGGAGCCCGAGCGCCCATGGCTCTCTGTCT
CCGGGCGCCTCTCCGCGGTTGTTGCGCCGCCGTTCGGACCAGCAATCCCA
TCCGTTGTACCCGGTGGGAAACGTGGGGCCGGGTCGACGCGCGAATGAGC
CTGCTTCCTCCATGCGACGCCTCTCGTCGGAGGCCGAGCTGAGGCGCACG
TGGACCCAGAAGCCGCTGCACGACCCGAGGGAGCCAATGCCAGGCAGCAG
GGTGGACGAGGGGGACCTGGGAGGACGGACGGCTGGCCTGGTCGCATTCA
ACGCCTTGGGGAAAAGCGCGCTTCGCCGGCACCACAGTCTGGGACCCGAC
CGACAGGCGGACGGAGCACGGAGAGCCGCTGCCCCCCCGTCCGGCCTGGC
CTCACCCTCGAACCAGCCACGGCGAGCCCTCTCGCTCTCCTCGAAATCGC
ACCTACATCGCCTTCACTCCGCGGCTACCACGTCTCAGTTACAGCCGACG
CAGCAGCAGCAGCAGCAGCCTCACCAGCAGTTCTCACACGGGCGAAACCG
TGACATCTCGAGCCTCCATTTCTCCCGGGTCCGGAAGCTGGCCGGGGCTT
TGAAGCGGGAGGGCTCCTTGTTGGCGGCGATGTCTCTGCTTAGCAACGAG
GCGGACATTCAAGAAACGCAGTTCGCCTCCCCTTCAACCTCCCTCGGTGT
TATCGGCGTAATGTCACCTCCTTCGTTCTCGACGACACACCTATCTTCTC
TCAATATGGCTGTTTTGGGTGGAGGAGAGCAGATTCGCAAGCACCAGACA
CCGGGTCACTCCCCACACTTGGATCCATCTCCATCCGTTTCTTCGCCTCG
CTCTGGCACCCCGCCCAGCACCATCTCGTTCATGCAAACGTCGGCGCGCC
CCCCCGGCCCGGGCCTCGGCCGCGGTGTCCCTGGGAGGGAAATGGGAGAA
GCGATATCAACCGTGCCTTGTCACGACTCCTGCCTTCAGTGCCAGCTTAA
TGACAGGGCTACCGAAGCCCCCCCGGTGCCTGCTTTGTTCCCCTGGGCCC
CTTTGACGGCGCAAATCAACAAGACCCGCGATATTGCCGACCTCTGCAAA
GCCAACGCGCACGCGATGGAGCAGTGGGGTTCCTCTCGTGGGAAGGAGTT
AGCCAAGCTTTGGTCAATGCTCTTCATTTCCGCCTCCGCCTGTTTGGATG
CCTTGTGTGTAGAAGCAACACGCTTGGTGACCGCGACAGTCGCCGGCCGC
ACGTCTATCGCGCTTTCCTCAGAGGCTTTGCGGCCTTGGAGGGATGGACC
ATTGGGACGGCCGCTGGTTGAGAAACTCTTGACAGTATACGAGAAGGAAG
GAGACGTTCAAACGCTGGCCACGATCGTATGTGTGCTTGACGTAGAGCAT
CCGGGCTCATTGCTTCAGGAAAGCAAGCGCGCCGAGTATGATCGGTATTT
GCGGGCCTACGCGGAGCTCCTTTACCGTTGGGGAGCTTTAGAGACGAGAG
CAGAGGTTTTGAAAAGATTGTCTGTATCGTCTTCCGCGTCGATATCTACA
GAAGAATCTAAATGTGTGTCGATGCGCCGGCAAGATATGGTGGTGGCATT
GCGATGTGAAGCTTGCGGGAGCCTTGATGGAGGAGTCGATGCGGGTACAG
GTGTCTGTCAGAAGTGCAAGATGTTCGCTTTTCGGTGCGTTATATGTCAG
CTAGCGGTTCGCGGACAATCTATGTTTTGTCTCAACTGCTCCCATGGTGG
ACACACTCCCCATGTGTGGGACTGGTTCATAGAGAACGATATGTGCGCAA
GTGGTTGTGGCTGTCGGTGTTTCTTTGGTCAAAGCGTAGAAATCCAATGC
AAATAG back to top
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