rna10159, rna10159 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10159
Unique Name	rna10159
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3189
Alignment location	KK037264.1:19722..21373 +

Link to JBrowse

Properties


Property Name	Value
Product	50s ribosomal protein l4
Orig transcript id	gnl\|cribi\|Naga_100685g2.2048.mrna
Orig protein id	gnl\|cribi\|Naga_100685g2.2048
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037264.1	supercontig	KK037264.1:19722..21373 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100685g2	gene9862	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10159	rna10159-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20545.1	cds10128	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037264.1:19722..21373+
coding sequence from alignment at KK037264.1:19722..21373+

mRNA sequence

>rna10159 ID=rna10159|Name=rna10159|organism=Nannochloropsis gaditana|type=mRNA|length=3189bp
ATGCGTTACTCACGTTTTTTCACCCCTTACGTTGGCAGGTTTTTTGGCCA
TACGTCAAAGCGGAAATCATCGCTGTGGATTTATCTCGCTTCGGGGACGC
GGACAGCTCACTTGACCCTTGAAGAGCGTCAAAAGGTAACCCCAGCATCC
CTTCCGAGGCCGGGAGACCATCCGCCTTTCATCGACCCGACAATTTTAAA
CGTGTGTCCCAATCTGCATGCTGAAAATCCTCCTCGTGGGGTAAAAACTC
GAATTCAAGCCCCAGGGGCAGGAGGAAAAGGACGTGGGCGACCGACTGAG
GCCGGCAGGGGAGGGGGCAGAGCAGGCAGACCAACGGCCGAGCCTGAGGG
AGGCAGCGAGGCGGCGAAGGAAGGAAAAAATCGAGAGGAGGACGCGACAG
GAGGAGATGGTGTGTGGATGAGTCCACCTGCGAGCGACCAGGCCAGAAAC
ATCGCAGGCGCCTGCGTGGGCCCCCGTTTCCATCAGGAGGAGGCGAGCAT
CAGAGGGAAGACAATCCTAGGACGGGATATGGAACCGAGCCGGAGTACGA
AGGAACCTAGAAGGGGTGATATCGAGGCAGTAAAGCGTGGGGAGGAAGCT
AAAAAAGGACCGAGCGAGGCTGGCCACCCGGGGGGGGGGCGGGGGGTGGC
GGGAAGGGGAGGGGCAATGGGTGCCAGGGAGGACATCCGCCTTGGAGAAA
CCGCGAGTGGCAGTGCAGAGGGAGGAAGAACTCACCAGGGTTGTAACGAA
GAAGACTTCTGGATGCCGGAGAGACATGGGGGGGGGGACAGTGAACGGAG
TGCGCTTCTTCCTTCTCCCCATGCCTCCCCGCCCCTCCCTCCCCCTCCCT
CCTCCGTTACCCGAACTTTCAGCAGCGGTAGCACCAGCAGCAACAACAGC
ACTGACCCGTCGTACAACTTGTCCCACCCTTCTCCGCCACCCGCCCTTGC
TCCCCTTCCTTCCTCCTTCCCGCCCTCCCCCGGCACCTCCCCCTCGGTCA
TGACCATGTGGGAGATGTTGGCCTCGGCGTTTCAATCCGCCTACGCCCAA
GGGCACATCGAGCGGGAGCGAGTCATTCAGACGTTACGGGTATGGACGGT
CGAGCAATACATCACGGGGTACGACCACACGTGGGGCGTGGCGGGCTACA
TATTGAAAATTTTGAAAATAACGGACGAAGAACTGAACCGAGCCGCCCTT
TCCACCATGGCCGAGGCCCATAAAATCTTGGAACAAAGACCGAGCACGGA
CGGGAGTGGCTCGATCGATTTGAGGAGCTTGCCCACCTTCCGGGTATTGG
ATGACGGAGAAACGCCTTTGTTGCTGATGCGTTTCAAGGGCCAACGGCTC
ACAACGGTCGTCAACGCCGCGTTTGAATCCTCGTTCTTCACCTCGGCCGA
AATTGAGGCGCAACGAAAGGCGGCATCCATGATTCTGGAGTTCGTGTTGG
CGAAGGCTGTCGCTGTCGAGGATCGCCTCGCCTTCTTCGAGACCCTCGCT
CGCTCCGTCTTCGGGGGCGAGTCCAACGTCTCCCAGCTTTTGAAATTTCA
AAAGAGAAACGGACGGAGCGTGGTCAGTCTCTTCCGGCTCCGGGGGGTCT
ATGTGGAGGAGATACGGGCGGGCGTGGGAGTCATCACCGTCGCCGCACTT
CCCTCTCCACTCAAATACCCCTTCATCGAAGAAGAGTCACCACGCCAGCT
TTCACAGCGGCCGCCGCATGGAAAGGAAGCGCGGGGGCAAGGGAGAGGGA
CCCTGGCAGGCAGGGACGAGGGAGGACGGGAGAGAGGGCGGGAGGGAAAA
CGGAAGAGGGCTCCCTCCACGGCCACGGCGTTCCTCGCATCATCCACCCC
TGTGGGGGTGCTCGGTCTTGAAAAGAAAACTAAGGAAACGGAGCAAGGAG
GCGGGAAGGAAGGCGGAGACAAATCGAAGGGAAGGGAAGGAGGGCACATG
CATAAAGATCCCTCCACCGCTTCCTCTTTCCCTCCCTCGGACCCTGAGGG
ACCTCCTGGCAACCTCCCGGCGACCCTCCGGCCCCGTGACATTCGCCGAA
AGCGAGAAACAACCCATGATCCCTCCTTGCACGCGGCATCCACAAGTTTC
GCGCCATTTTCTCCCCCTGCGCCCGTCGAGAGGGGTGGGACGTTCCGGGC
AGGGAGGGAAGCGAAGGAAGAAAAAGAGGAGGAAACCATCCCGTTCTACA
GACCATTGCCGCTCAAGCGCCCCTCCTCCTCCTCCTCTGCCGCTTCCTCC
TCTTACACCTCCTCCTCCTCCTCCTCGTATGTCTCCACTTCCTCGTCGTC
CCACTCCTCCCCCTCCGCTTCCTCCTCTACCATCCATGTTGGCCAGCCGT
CTTCAAATTCAGGCGGGATTGCCACAAGGGAAGAAGAGAAGGAATGTGAA
GATAAGGAGCCCCAGGGGAAGTCCCGCCCTCCGGCGTCGGCCGCGTCAGA
CTACCAGACCTTCCCTGCCCCTTCCTCCCTTCCTCCCTCCCTCCCTCCCT
TCTTCCCTCCCTCCTTTCCGCGTCGACGACGGCCGAGTGGAGATTACCTG
CGACCAGACGAAGAGGAGGGAGAAGGAAGGAAGCAAAGAGAGGCATTGGA
GGTGCCATCGCAGGCTCGGAACCCAGCTCCGCACGAGAAAGCACTCACGC
CTGTGGAGGCCTCTATGCTCTTTTTGCAGCAGGAATTGCAGGATACCCGA
GGAGGACAGCAGCAGGGTCAAGAGCAGGAGCAAGGATTGCGAGACATGCG
AGAGCCGCAGGGGTACCGCCAGGGGCAGGAATTGCATCCACGGCAGCAAT
TTGTGCCAAAACAGGAGCCGCTGGGACAAGAAGAGCCGCCGCGACCGTTC
CCTCACCGGGATTACGAAGCACAGCAGCAGCAGCAACAACAACAACAACA
GCGACAACAAACACAAGAAAAACCACCACCACATGCACCACAGCCACCAC
AACAACACTTGCAATCACAGCCACCACAGCAACAACAACCACCACCACCA
CCACCACCACCACCACAACACCAACAGCAACAGGAGCAACAGCACCTTAG
CGACCGACAGCCGCAGCCTTCAAAGCAACCACAGCCACAACTGCAACAGG
AAACGCACCATTACCAACAACTGCAACCGTGGCGGCCACAAAGATCACAC
TCCCAGGGGCAAGAGCTGCCCGGATGGGAGGCCGCCTGA

protein sequence of rna10159

>rna10159-protein ID=rna10159-protein|Name=rna10159|organism=Nannochloropsis gaditana|type=polypeptide|length=379bp
MCTTRMKSTSMAGRVSYLSFLLDGIFEWKQPLPCSMEGGRKTSQGTSLRE
GGTEAQNLVGPTLGHPFLLACRHAPGQPLSLTHKHARMATDMLRHAIFRV
GRCSSRSRTMTEAISRPLASSLSCTRHCNSTAKSAIRLPRNGSSLRLPPT
LLQRVARIRFLSSLLPSIGARSSSSLHTSAEHTSPPPPPPPPPPPSSSTL
SIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIG
DVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDI
RGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRA
LGVRMALSAKAREGEGGREGGREGGREGA

mRNA from alignment at KK037264.1:19722..21373+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10159 ID=rna10159|Name=rna10159|organism=Nannochloropsis gaditana|type=mRNA|length=1652bp|location=Sequence derived from alignment at KK037264.1:19722..21373+ (Nannochloropsis gaditana)
ATATCCTCAAGTCCACAATTCAGATGCGCAATACCAGACGGCCTTTTTGC
CTGTCATCTCTCAGGCCTCGGCGGATTTGACGAGTACGATAAACACCACA
GGGACCATCTCCTTGCGAGAGCTCTTGCTTCGCCTTGGCCACAAAGCTGT
GGCACTTCTCAAAAATCCTGAGCATACATGTGCACAACCCGAATGAAGTC
TACGTCCATGGCCGGACGTGTCTCGTACCTGTCCTTCTTGTTGGATGGCA
TTTTCGAGTGGAAGCAGCCTTTGCCCTGCTCAATGGAGGGCGGACGAAAA
ACATCACAAGGAACCTCcttgagagaaggagggactgaGGCTCAAAACCT
GGTGGGCCCGACTCTTGGCCACCCCTTCTTGCTTGCATGTAGACATGCCC
CTGGTCAGCCTTTGTCTTTGACACATAAACATGCACGTATGGCCACAGAT
ATGCTGCGCCACGCCATTTTTAGGGTTGGGCGCTGCTCTTCGAGGAGTCG
TACAATGACAGAGGCCATATCCCGGCCTCTGGCCTCGTCTCTTTCTTGCA
CAAGACATTGCAACTCGACGGCGAAATCAGCCATAAGATTACCTAGAAAT
GGTTCTAGTCTGCGTCTTCCCCCTACTTTGTTGCAGCGTGTGGCCAGAAT
AAGATTTTTATCGTCCCTGCTTCCAAGTATCGGCgcccgttcctcttcct
cccttcacaCCTCCGCTGAGCATACaagtcctccccctcctccacctcct
ccaccgcctccctcctcctccacactctCTATCCCCTCCAACCTCATCCT
GGCTGATCCCTCCGTGCTCACGGCCTTCAAGCCGGTTTCCGTCGAGGATC
GcttgaagaaaaaggaggagatggaagggatCATCGACCCCAAACTGCTC
ACGCTACCCGTACGAAAGAGCATCGGCGATGTCaatcaagaggaagaaga
aacaaTAAATTTGGATTCACGGTGAGTGTGAGGGAGAGAAACGGGCTGGG
GGGTTGATAATCGGAGGAAGGCTTACAAAGAGCAATGCCCCCATTATGCA
Agacccatccctccctcccttcctccctcctttcctccctccctccctcc
ctccctccctccctcttttcttccctccctcccttccttccttcatgTAC
CCCCAAGTGTCTTTGGCGTGCCCGTCCGGAAAGACATCATCCATCGGCTG
GTAACCTGGCAGCGGGCCAAGCAGAGGGTTGGCATGGCGAGGACGAAACG
CGTCGGGGATATTCGGGGTTCGACGAAAAAACTCCGACCCCAGAAAGGAA
ctgggcgggcacgggcgggAAAAAAGCAGTAAGGACAAGcagggagcaag
gagaggggaaaggagggagcaggggagaTGAGGCACGAGGTTTGAGTACC
CAGGAACGGACACAGGCGTGCTCAcgatcctccttccctccctccctccc
tccctcccttcctccctccctcccttcctagcGCGGCCCAGtttcgagga
ggagctaAAGCGCATGGACCTGTGCCACGGGATTTTTCCTTCAAGTTGAA
CAGGAAGGTTCGGGCCCTGGGAGTGCGCATGGCACTCTCAGCGAAAGCCc
gcgagggtgagggagggagggagggagggagggagggagggagggagggg
gc

Coding sequence (CDS) from alignment at KK037264.1:19722..21373+

>rna10159 ID=rna10159|Name=rna10159|organism=Nannochloropsis gaditana|type=CDS|length=3408bp|location=Sequence derived from alignment at KK037264.1:19722..21373+ (Nannochloropsis gaditana)
ATGTGCACAACCCGAATGAAGTCTACGTCCATGGCCGGACGTGTCTCGTA
CCTGTCCTTCTTGTTGGATGGCATTTTCGAGTGGAAGCAGCCTTTGCCCT
GCTCAATGGAGGGCGGACGAAAAACATCACAAGGAACCTCcttgagagaa
ggagggactgaGGCTCAAAACCTGGTGGGCCCGACTCTTGGCCACCCCTT
CTTGCTTGCATGTAGACATGCCCCTGGTCAGCCTTTGTCTTTGACACATA
AACATGCACGTATGGCCACAGATATGCTGCGCCACGCCATTTTTAGGGTT
GGGCGCTGCTCTTCGAGGAGTCGTACAATGACAGAGGCCATATCCCGGCC
TCTGGCCTCGTCTCTTTCTTGCACAAGACATTGCAACTCGACGGCGAAAT
CAGCCATAAGATTACCTAGAAATGGTTCTAGTCTGCGTCTTCCCCCTACT
TTGTTGCAGCGTGTGGCCAGAATAAGATTTTTATCGTCCCTGCTTCCAAG
TATCGGCgcccgttcctcttcctcccttcacaCCTCCGCTGAGCATACaa
gtcctccccctcctccacctcctccaccgcctccctcctcctccacactc
tCTATCCCCTCCAACCTCATCCTGGCTGATCCCTCCGTGCTCACGGCCTT
CAAGCCGGTTTCCGTCGAGGATCGcttgaagaaaaaggaggagatggaag
ggatCATCGACCCCAAACTGCTCACGCTACCCGTACGAAAGAGCATCGGC
GATGTCaatcaagaggaagaagaaacaaTAAATTTGGATTCACGTGTCTT
TGGCGTGCCCGTCCGGAAAGACATCATCCATCGGCTGGTAACCTGGCAGC
GGGCCAAGCAGAGGGTTGGCATGGCGAGGACGAAACGCGTCGGGGATATT
CGGGGTTCGACGAAAAAACTCCGACCCCAGAAAGGAActgggcgggcacg
ggcgggAAAAAAGCAcGCGGCCCAGtttcgaggaggagctaAAGCGCATG
GACCTGTGCCACGGGATTTTTCCTTCAAGTTGAACAGGAAGGTTCGGGCC
CTGGGAGTGCGCATGGCACTCTCAGCGAAAGCCcgcgagggtgagggagg
gagggagggagggagggagggagggagggagggggcATGTGCACAACCCG
AATGAAGTCTACGTCCATGGCCGGACGTGTCTCGTACCTGTCCTTCTTGT
TGGATGGCATTTTCGAGTGGAAGCAGCCTTTGCCCTGCTCAATGGAGGGC
GGACGAAAAACATCACAAGGAACCTCcttgagagaaggagggactgaGGC
TCAAAACCTGGTGGGCCCGACTCTTGGCCACCCCTTCTTGCTTGCATGTA
GACATGCCCCTGGTCAGCCTTTGTCTTTGACACATAAACATGCACGTATG
GCCACAGATATGCTGCGCCACGCCATTTTTAGGGTTGGGCGCTGCTCTTC
GAGGAGTCGTACAATGACAGAGGCCATATCCCGGCCTCTGGCCTCGTCTC
TTTCTTGCACAAGACATTGCAACTCGACGGCGAAATCAGCCATAAGATTA
CCTAGAAATGGTTCTAGTCTGCGTCTTCCCCCTACTTTGTTGCAGCGTGT
GGCCAGAATAAGATTTTTATCGTCCCTGCTTCCAAGTATCGGCgcccgtt
cctcttcctcccttcacaCCTCCGCTGAGCATACaagtcctccccctcct
ccacctcctccaccgcctccctcctcctccacactctCTATCCCCTCCAA
CCTCATCCTGGCTGATCCCTCCGTGCTCACGGCCTTCAAGCCGGTTTCCG
TCGAGGATCGcttgaagaaaaaggaggagatggaagggatCATCGACCCC
AAACTGCTCACGCTACCCGTACGAAAGAGCATCGGCGATGTCaatcaaga
ggaagaagaaacaaTAAATTTGGATTCACGTGTCTTTGGCGTGCCCGTCC
GGAAAGACATCATCCATCGGCTGGTAACCTGGCAGCGGGCCAAGCAGAGG
GTTGGCATGGCGAGGACGAAACGCGTCGGGGATATTCGGGGTTCGACGAA
AAAACTCCGACCCCAGAAAGGAActgggcgggcacgggcgggAAAAAAGC
AcGCGGCCCAGtttcgaggaggagctaAAGCGCATGGACCTGTGCCACGG
GATTTTTCCTTCAAGTTGAACAGGAAGGTTCGGGCCCTGGGAGTGCGCAT
GGCACTCTCAGCGAAAGCCcgcgagggtgagggagggagggagggaggga
gggagggagggagggagggggcATGTGCACAACCCGAATGAAGTCTACGT
CCATGGCCGGACGTGTCTCGTACCTGTCCTTCTTGTTGGATGGCATTTTC
GAGTGGAAGCAGCCTTTGCCCTGCTCAATGGAGGGCGGACGAAAAACATC
ACAAGGAACCTCcttgagagaaggagggactgaGGCTCAAAACCTGGTGG
GCCCGACTCTTGGCCACCCCTTCTTGCTTGCATGTAGACATGCCCCTGGT
CAGCCTTTGTCTTTGACACATAAACATGCACGTATGGCCACAGATATGCT
GCGCCACGCCATTTTTAGGGTTGGGCGCTGCTCTTCGAGGAGTCGTACAA
TGACAGAGGCCATATCCCGGCCTCTGGCCTCGTCTCTTTCTTGCACAAGA
CATTGCAACTCGACGGCGAAATCAGCCATAAGATTACCTAGAAATGGTTC
TAGTCTGCGTCTTCCCCCTACTTTGTTGCAGCGTGTGGCCAGAATAAGAT
TTTTATCGTCCCTGCTTCCAAGTATCGGCgcccgttcctcttcctccctt
cacaCCTCCGCTGAGCATACaagtcctccccctcctccacctcctccacc
gcctccctcctcctccacactctCTATCCCCTCCAACCTCATCCTGGCTG
ATCCCTCCGTGCTCACGGCCTTCAAGCCGGTTTCCGTCGAGGATCGcttg
aagaaaaaggaggagatggaagggatCATCGACCCCAAACTGCTCACGCT
ACCCGTACGAAAGAGCATCGGCGATGTCaatcaagaggaagaagaaacaa
TAAATTTGGATTCACGTGTCTTTGGCGTGCCCGTCCGGAAAGACATCATC
CATCGGCTGGTAACCTGGCAGCGGGCCAAGCAGAGGGTTGGCATGGCGAG
GACGAAACGCGTCGGGGATATTCGGGGTTCGACGAAAAAACTCCGACCCC
AGAAAGGAActgggcgggcacgggcgggAAAAAAGCAcGCGGCCCAGttt
cgaggaggagctaAAGCGCATGGACCTGTGCCACGGGATTTTTCCTTCAA
GTTGAACAGGAAGGTTCGGGCCCTGGGAGTGCGCATGGCACTCTCAGCGA
AAGCCcgcgagggtgagggagggagggagggagggagggagggagggagg
gagggggc

Synonyms

Publications