EWM20545.1, cds10128 (CDS) Nannochloropsis gaditana

Overview
NameEWM20545.1
Unique Namecds10128
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037264.1:19899..20692 +
Alignment locationKK037264.1:20879..21049 +
Alignment locationKK037264.1:21203..21373 +

Link to JBrowse

Properties
Property NameValue
End range.
End range21373
Protein idEWM20545.1
Product50s ribosomal protein l4
Partialtrue
Orig transcript idgnl|cribi|Naga_100685g2.2048.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:19899..20692 +
KK037264.1supercontigKK037264.1:20879..21049 +
KK037264.1supercontigKK037264.1:21203..21373 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR013005Ribosomal_uL4/L1e
IPR002136Ribosomal_L4/L1e
IPR023574Ribosomal_L4_dom
Homology
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|585100239|gb|EWM20545.1| (50s ribosomal protein l4, partial [Nannochloropsis gaditana])

HSP 1 Score: 761.525 bits (1965), Expect = 0.000e+0
Identity = 379/379 (100.00%), Postives = 379/379 (100.00%), Query Frame = 0
Query:    1 MCTTRMKSTSMAGRVSYLSFLLDGIFEWKQPLPCSMEGGRKTSQGTSLREGGTEAQNLVGPTLGHPFLLACRHAPGQPLSLTHKHARMATDMLRHAIFRVGRCSSRSRTMTEAISRPLASSLSCTRHCNSTAKSAIRLPRNGSSLRLPPTLLQRVARIRFLSSLLPSIGARSSSSLHTSAEHTSPPPPPPPPPPPSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGEGGREGGREGGREGA 379
            MCTTRMKSTSMAGRVSYLSFLLDGIFEWKQPLPCSMEGGRKTSQGTSLREGGTEAQNLVGPTLGHPFLLACRHAPGQPLSLTHKHARMATDMLRHAIFRVGRCSSRSRTMTEAISRPLASSLSCTRHCNSTAKSAIRLPRNGSSLRLPPTLLQRVARIRFLSSLLPSIGARSSSSLHTSAEHTSPPPPPPPPPPPSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGEGGREGGREGGREGA
Sbjct:    1 MCTTRMKSTSMAGRVSYLSFLLDGIFEWKQPLPCSMEGGRKTSQGTSLREGGTEAQNLVGPTLGHPFLLACRHAPGQPLSLTHKHARMATDMLRHAIFRVGRCSSRSRTMTEAISRPLASSLSCTRHCNSTAKSAIRLPRNGSSLRLPPTLLQRVARIRFLSSLLPSIGARSSSSLHTSAEHTSPPPPPPPPPPPSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGEGGREGGREGGREGA 379          
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|302772867|ref|XP_002969851.1| (hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii] >gi|300162362|gb|EFJ28975.1| hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii])

HSP 1 Score: 126.716 bits (317), Expect = 5.079e-31
Identity = 59/115 (51.30%), Postives = 83/115 (72.17%), Query Frame = 0
Query:  249 IGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKARE 363
            + +  QE++ T+ +   +F VP+RKDI+H +V WQRAK+R G   TK  G++ GST+K+  QKGTG+AR G + A QFRGG  AHGP PR + +KLN+KVR LG+++ALSA+  E
Sbjct:    8 VTNWEQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAGSTRKIHKQKGTGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRRLGLKIALSARVAE 122          
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|302807160|ref|XP_002985293.1| (hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii] >gi|300147121|gb|EFJ13787.1| hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii])

HSP 1 Score: 126.716 bits (317), Expect = 5.407e-31
Identity = 59/115 (51.30%), Postives = 83/115 (72.17%), Query Frame = 0
Query:  249 IGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKARE 363
            + +  QE++ T+ +   +F VP+RKDI+H +V WQRAK+R G   TK  G++ GST+K+  QKGTG+AR G + A QFRGG  AHGP PR + +KLN+KVR LG+++ALSA+  E
Sbjct:    8 VTNWEQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAGSTRKINKQKGTGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRRLGLKIALSARVAE 122          
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|299470351|emb|CBN78400.1| (50S ribosomal protein L4P [Ectocarpus siliculosus])

HSP 1 Score: 129.413 bits (324), Expect = 5.413e-31
Identity = 63/107 (58.88%), Postives = 82/107 (76.64%), Query Frame = 0
Query:  259 TINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGE 365
            T++L   VFGVPVR+D++H +V WQ A++R G  +TKR+G+I GS +K+RPQKG G ARAG      +RGGAKAHGP  RDFSFKLN+K   LG+R+ALSA+ REG+
Sbjct:  113 TVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQ 219          
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|1139787402|gb|ONI20829.1| (hypothetical protein PRUPE_2G035900 [Prunus persica])

HSP 1 Score: 126.716 bits (317), Expect = 1.616e-30
Identity = 73/174 (41.95%), Postives = 101/174 (58.05%), Query Frame = 0
Query:  193 PPPSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGEG 366
            P P SS  + PSNL+ A P V +       +D                L +PV     + + E++    L   VF VP+RKDIIHR+V WQ AK++ G   TK + ++ G+ +K   QKGTGRAR G   + QFRGG+  HGP PR  +FKLN+KVR LG+++AL+A+A EG+G
Sbjct:   65 PSPESSGGAFPSNLLSAKPVVASESNIGLYQD----------------LVIPVT----NFHNEDKGFTVLAGDVFDVPIRKDIIHRVVLWQLAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARQGSLRSPQFRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALTARAAEGKG 218          
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|1032153871|gb|OAO17164.1| (LSU ribosomal protein L4P [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 127.102 bits (318), Expect = 3.048e-30
Identity = 76/172 (44.19%), Postives = 105/172 (61.05%), Query Frame = 0
Query:  195 PSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRK-SIGDV--NQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKARE 363
            P    L IP+NL + D S+L              KEE + ++DP   T PV++  + ++   ++ +E I LD+RVFG+P+R+DI+HR+V WQ AK+R G    K + +I  S +K   QKGTGRAR G+K A Q RGG K  GP PRD+ + L  KVRALG+R ALS K +E
Sbjct:   47 PLLKNLQIPTNLTMEDFSLLAP------------KEE-KPLLDP--FTFPVKELPVYNIATGEKTDERITLDNRVFGMPLREDILHRVVVWQLAKRRQGTHCVKTLSEISSSNRKPFAQKGTGRARQGQKRAPQMRGGYKPMGPRPRDYDYTLPFKVRALGLRTALSLKWQE 203          
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|325179760|emb|CCA14163.1| (50S ribosomal protein L4 putative [Albugo laibachii Nc14])

HSP 1 Score: 124.405 bits (311), Expect = 1.777e-29
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 0
Query:  244 PVRKSIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGE 365
            P+  ++   ++    T+ LD  VF VP+RKDI+HR+V WQ A +R G  + K   + RGST+K+RPQKG+G+AR G   A Q+RGG   HGPV RD S+ L +KVRA G+R+ALS K REG+
Sbjct:   71 PIINTLAFKDESVVNTLALDPSVFNVPLRKDILHRVVRWQLACRRSGNHKAKSRSETRGSTRKVRPQKGSGQARVGDVRAPQWRGGYCVHGPVVRDHSYTLQKKVRAFGIRVALSQKLREGK 192          
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|950883340|ref|XP_014524942.1| (50S ribosomal protein L4 [Blastocystis sp. subtype 4] >gi|902859553|gb|KNB41499.1| 50S ribosomal protein L4 [Blastocystis sp. subtype 4])

HSP 1 Score: 124.79 bits (312), Expect = 1.972e-29
Identity = 78/173 (45.09%), Postives = 106/173 (61.27%), Query Frame = 0
Query:  195 PSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDP---KLLTLPVRK-SIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKARE 363
            P    L IPSNL + DP++   F P         KEE+  ++DP   ++  LPV   + GD   + +E I L++RVFG+P+R+DI+HR+V WQ AK+R G    K + ++ GS +K   QKGTG AR G+K A Q RGG K  GP PRD+ + L  KVRALG+R ALS K +E
Sbjct:   44 PLLKDLDIPSNLQIEDPTI---FAP---------KEEVP-LLDPFKIRVKELPVYSIATGD---KTDEVITLNNRVFGMPIREDILHRVVVWQLAKRRQGSHCVKTLSEVSGSNRKPFRQKGTGMARQGQKRAPQMRGGYKPMGPRPRDYYYPLPFKVRALGLRTALSLKWQE 200          
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|902228600|gb|KNA21178.1| (hypothetical protein SOVF_045660 [Spinacia oleracea])

HSP 1 Score: 124.79 bits (312), Expect = 2.070e-29
Identity = 71/171 (41.52%), Postives = 101/171 (59.06%), Query Frame = 0
Query:  195 PSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGE 365
            P SS   IPSNL++   SV  A             +  +G+     L +PV     + + E++  + L   VF VP+RKDI+HR+V WQ AK++ G   TK + ++ G+ +K  PQKGTGRAR G K +   RGG+  HGP PR  +FKLN+ VR LG+++ALSA+A EG+
Sbjct:   39 PYSSNGEIPSNLLMPKKSVSIA-------------DHTQGVYQD--LVIPVT----NFHFEDKGLMALAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPHPQKGTGRARQGSKRSCHMRGGSTMHGPKPRSHAFKLNKMVRRLGLKIALSARATEGK 190          
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|1139787405|gb|ONI20832.1| (hypothetical protein PRUPE_2G035900 [Prunus persica])

HSP 1 Score: 124.02 bits (310), Expect = 2.604e-29
Identity = 73/173 (42.20%), Postives = 101/173 (58.38%), Query Frame = 0
Query:  193 PPPSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGE 365
            P P SS  + PSNL+ A P V +              E   G+     L +PV     + + E++    L   VF VP+RKDIIHR+V WQ AK++ G   TK + ++ G+ +K   QKGTGRAR G   + QFRGG+  HGP PR  +FKLN+KVR LG+++AL+A+A EG+
Sbjct:   65 PSPESSGGAFPSNLLSAKPVVAS--------------ESNIGLYQD--LVIPVT----NFHNEDKGFTVLAGDVFDVPIRKDIIHRVVLWQLAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARQGSLRSPQFRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALTARAAEGK 217          
The following BLAST results are available for this feature:
BLAST of EWM20545.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100239|gb|EWM20545.1|0.000e+0100.0050s ribosomal protein l4, partial [Nannochloropsis... [more]
gi|302772867|ref|XP_002969851.1|5.079e-3151.30hypothetical protein SELMODRAFT_227946 [Selaginell... [more]
gi|302807160|ref|XP_002985293.1|5.407e-3151.30hypothetical protein SELMODRAFT_181558 [Selaginell... [more]
gi|299470351|emb|CBN78400.1|5.413e-3158.8850S ribosomal protein L4P [Ectocarpus siliculosus][more]
gi|1139787402|gb|ONI20829.1|1.616e-3041.95hypothetical protein PRUPE_2G035900 [Prunus persic... [more]
gi|1032153871|gb|OAO17164.1|3.048e-3044.19LSU ribosomal protein L4P [Blastocystis sp. ATCC 5... [more]
gi|325179760|emb|CCA14163.1|1.777e-2950.0050S ribosomal protein L4 putative [Albugo laibachi... [more]
gi|950883340|ref|XP_014524942.1|1.972e-2945.0950S ribosomal protein L4 [Blastocystis sp. subtype... [more]
gi|902228600|gb|KNA21178.1|2.070e-2941.52hypothetical protein SOVF_045660 [Spinacia olerace... [more]
gi|1139787405|gb|ONI20832.1|2.604e-2942.20hypothetical protein PRUPE_2G035900 [Prunus persic... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10159rna10159Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications