EWM20545.1, cds10128 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|585100239|gb|EWM20545.1| (50s ribosomal protein l4, partial [Nannochloropsis gaditana]) HSP 1 Score: 761.525 bits (1965), Expect = 0.000e+0 Identity = 379/379 (100.00%), Postives = 379/379 (100.00%), Query Frame = 0 Query: 1 MCTTRMKSTSMAGRVSYLSFLLDGIFEWKQPLPCSMEGGRKTSQGTSLREGGTEAQNLVGPTLGHPFLLACRHAPGQPLSLTHKHARMATDMLRHAIFRVGRCSSRSRTMTEAISRPLASSLSCTRHCNSTAKSAIRLPRNGSSLRLPPTLLQRVARIRFLSSLLPSIGARSSSSLHTSAEHTSPPPPPPPPPPPSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGEGGREGGREGGREGA 379 MCTTRMKSTSMAGRVSYLSFLLDGIFEWKQPLPCSMEGGRKTSQGTSLREGGTEAQNLVGPTLGHPFLLACRHAPGQPLSLTHKHARMATDMLRHAIFRVGRCSSRSRTMTEAISRPLASSLSCTRHCNSTAKSAIRLPRNGSSLRLPPTLLQRVARIRFLSSLLPSIGARSSSSLHTSAEHTSPPPPPPPPPPPSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGEGGREGGREGGREGA Sbjct: 1 MCTTRMKSTSMAGRVSYLSFLLDGIFEWKQPLPCSMEGGRKTSQGTSLREGGTEAQNLVGPTLGHPFLLACRHAPGQPLSLTHKHARMATDMLRHAIFRVGRCSSRSRTMTEAISRPLASSLSCTRHCNSTAKSAIRLPRNGSSLRLPPTLLQRVARIRFLSSLLPSIGARSSSSLHTSAEHTSPPPPPPPPPPPSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGEGGREGGREGGREGA 379
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|302772867|ref|XP_002969851.1| (hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii] >gi|300162362|gb|EFJ28975.1| hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii]) HSP 1 Score: 126.716 bits (317), Expect = 5.079e-31 Identity = 59/115 (51.30%), Postives = 83/115 (72.17%), Query Frame = 0 Query: 249 IGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKARE 363 + + QE++ T+ + +F VP+RKDI+H +V WQRAK+R G TK G++ GST+K+ QKGTG+AR G + A QFRGG AHGP PR + +KLN+KVR LG+++ALSA+ E Sbjct: 8 VTNWEQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAGSTRKIHKQKGTGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRRLGLKIALSARVAE 122
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|302807160|ref|XP_002985293.1| (hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii] >gi|300147121|gb|EFJ13787.1| hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii]) HSP 1 Score: 126.716 bits (317), Expect = 5.407e-31 Identity = 59/115 (51.30%), Postives = 83/115 (72.17%), Query Frame = 0 Query: 249 IGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKARE 363 + + QE++ T+ + +F VP+RKDI+H +V WQRAK+R G TK G++ GST+K+ QKGTG+AR G + A QFRGG AHGP PR + +KLN+KVR LG+++ALSA+ E Sbjct: 8 VTNWEQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAGSTRKINKQKGTGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRRLGLKIALSARVAE 122
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|299470351|emb|CBN78400.1| (50S ribosomal protein L4P [Ectocarpus siliculosus]) HSP 1 Score: 129.413 bits (324), Expect = 5.413e-31 Identity = 63/107 (58.88%), Postives = 82/107 (76.64%), Query Frame = 0 Query: 259 TINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGE 365 T++L VFGVPVR+D++H +V WQ A++R G +TKR+G+I GS +K+RPQKG G ARAG +RGGAKAHGP RDFSFKLN+K LG+R+ALSA+ REG+ Sbjct: 113 TVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQ 219
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|1139787402|gb|ONI20829.1| (hypothetical protein PRUPE_2G035900 [Prunus persica]) HSP 1 Score: 126.716 bits (317), Expect = 1.616e-30 Identity = 73/174 (41.95%), Postives = 101/174 (58.05%), Query Frame = 0 Query: 193 PPPSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGEG 366 P P SS + PSNL+ A P V + +D L +PV + + E++ L VF VP+RKDIIHR+V WQ AK++ G TK + ++ G+ +K QKGTGRAR G + QFRGG+ HGP PR +FKLN+KVR LG+++AL+A+A EG+G Sbjct: 65 PSPESSGGAFPSNLLSAKPVVASESNIGLYQD----------------LVIPVT----NFHNEDKGFTVLAGDVFDVPIRKDIIHRVVLWQLAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARQGSLRSPQFRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALTARAAEGKG 218
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|1032153871|gb|OAO17164.1| (LSU ribosomal protein L4P [Blastocystis sp. ATCC 50177/Nand II]) HSP 1 Score: 127.102 bits (318), Expect = 3.048e-30 Identity = 76/172 (44.19%), Postives = 105/172 (61.05%), Query Frame = 0 Query: 195 PSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRK-SIGDV--NQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKARE 363 P L IP+NL + D S+L KEE + ++DP T PV++ + ++ ++ +E I LD+RVFG+P+R+DI+HR+V WQ AK+R G K + +I S +K QKGTGRAR G+K A Q RGG K GP PRD+ + L KVRALG+R ALS K +E Sbjct: 47 PLLKNLQIPTNLTMEDFSLLAP------------KEE-KPLLDP--FTFPVKELPVYNIATGEKTDERITLDNRVFGMPLREDILHRVVVWQLAKRRQGTHCVKTLSEISSSNRKPFAQKGTGRARQGQKRAPQMRGGYKPMGPRPRDYDYTLPFKVRALGLRTALSLKWQE 203
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|325179760|emb|CCA14163.1| (50S ribosomal protein L4 putative [Albugo laibachii Nc14]) HSP 1 Score: 124.405 bits (311), Expect = 1.777e-29 Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 0 Query: 244 PVRKSIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGE 365 P+ ++ ++ T+ LD VF VP+RKDI+HR+V WQ A +R G + K + RGST+K+RPQKG+G+AR G A Q+RGG HGPV RD S+ L +KVRA G+R+ALS K REG+ Sbjct: 71 PIINTLAFKDESVVNTLALDPSVFNVPLRKDILHRVVRWQLACRRSGNHKAKSRSETRGSTRKVRPQKGSGQARVGDVRAPQWRGGYCVHGPVVRDHSYTLQKKVRAFGIRVALSQKLREGK 192
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|950883340|ref|XP_014524942.1| (50S ribosomal protein L4 [Blastocystis sp. subtype 4] >gi|902859553|gb|KNB41499.1| 50S ribosomal protein L4 [Blastocystis sp. subtype 4]) HSP 1 Score: 124.79 bits (312), Expect = 1.972e-29 Identity = 78/173 (45.09%), Postives = 106/173 (61.27%), Query Frame = 0 Query: 195 PSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDP---KLLTLPVRK-SIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKARE 363 P L IPSNL + DP++ F P KEE+ ++DP ++ LPV + GD + +E I L++RVFG+P+R+DI+HR+V WQ AK+R G K + ++ GS +K QKGTG AR G+K A Q RGG K GP PRD+ + L KVRALG+R ALS K +E Sbjct: 44 PLLKDLDIPSNLQIEDPTI---FAP---------KEEVP-LLDPFKIRVKELPVYSIATGD---KTDEVITLNNRVFGMPIREDILHRVVVWQLAKRRQGSHCVKTLSEVSGSNRKPFRQKGTGMARQGQKRAPQMRGGYKPMGPRPRDYYYPLPFKVRALGLRTALSLKWQE 200
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|902228600|gb|KNA21178.1| (hypothetical protein SOVF_045660 [Spinacia oleracea]) HSP 1 Score: 124.79 bits (312), Expect = 2.070e-29 Identity = 71/171 (41.52%), Postives = 101/171 (59.06%), Query Frame = 0 Query: 195 PSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGE 365 P SS IPSNL++ SV A + +G+ L +PV + + E++ + L VF VP+RKDI+HR+V WQ AK++ G TK + ++ G+ +K PQKGTGRAR G K + RGG+ HGP PR +FKLN+ VR LG+++ALSA+A EG+ Sbjct: 39 PYSSNGEIPSNLLMPKKSVSIA-------------DHTQGVYQD--LVIPVT----NFHFEDKGLMALAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPHPQKGTGRARQGSKRSCHMRGGSTMHGPKPRSHAFKLNKMVRRLGLKIALSARATEGK 190
BLAST of EWM20545.1 vs. NCBI_GenBank
Match: gi|1139787405|gb|ONI20832.1| (hypothetical protein PRUPE_2G035900 [Prunus persica]) HSP 1 Score: 124.02 bits (310), Expect = 2.604e-29 Identity = 73/173 (42.20%), Postives = 101/173 (58.38%), Query Frame = 0 Query: 193 PPPSSSTLSIPSNLILADPSVLTAFKPVSVEDRLKKKEEMEGIIDPKLLTLPVRKSIGDVNQEEEETINLDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGE 365 P P SS + PSNL+ A P V + E G+ L +PV + + E++ L VF VP+RKDIIHR+V WQ AK++ G TK + ++ G+ +K QKGTGRAR G + QFRGG+ HGP PR +FKLN+KVR LG+++AL+A+A EG+ Sbjct: 65 PSPESSGGAFPSNLLSAKPVVAS--------------ESNIGLYQD--LVIPVT----NFHNEDKGFTVLAGDVFDVPIRKDIIHRVVLWQLAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARQGSLRSPQFRGGSTMHGPKPRSHAFKLNKKVRRLGLKIALTARAAEGK 217 The following BLAST results are available for this feature:
BLAST of EWM20545.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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