rna10154, rna10154 (mRNA) Nannochloropsis gaditana

Overview
Namerna10154
Unique Namerna10154
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length394
Alignment locationKK037264.1:6661..7727 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100807g2.7977.mrna
Orig protein idgnl|cribi|Naga_100807g2.7977
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:6661..7727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100807g2gene9857Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20549.1cds10123Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10154rna10154-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10154 ID=rna10154|Name=rna10154|organism=Nannochloropsis gaditana|type=mRNA|length=394bp
CTCCAGCTACTACTCCTACAAATGGGCAGAAGTCATGTCAGCCGACGCTT
TCTCCGCCTTTGAGGAGGTGGGCCTCGACAACGAAGAAAAAGTCCAGGAG
GTCGGCCGTCGCTTCCGTCAGACGGTGCTCGCCATGGGCGGAGGGACTCC
TCCTAGTGAAGTGTACGAAGCCTTTCGAGGCCGTCAGCCCAAGCCCGACG
CGTTGCTGCGCCACTCAGGACTGGCAAAGGAAGGAGAATGCGCGGCCACG
CATTAGGTCTTTCGGGAGGGGAAGAGCGTGAGGAGGGAGGGTGATGGGCG
TGGAGGATAGGAGGGAGGGATGGTATCGAAGGGAGGCGGTGAAGCCGCCG
TCGTAGTACGCAAAAGAAACATGGAGCCAATCGGGGTCGATAAG
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protein sequence of rna10154

>rna10154-protein ID=rna10154-protein|Name=rna10154|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MTSSRTFTPFALRFLDESIPRLITLIVIAHFFDGTTVTKHLTSSTHILTG
NVAHIVQREFRRVKRLVEAMPVPIRLKPPTHAQDTSLSVCMIYLPRKESK
MALPLGGIDLKAGKA
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mRNA from alignment at KK037264.1:6661..7727-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10154 ID=rna10154|Name=rna10154|organism=Nannochloropsis gaditana|type=mRNA|length=1067bp|location=Sequence derived from alignment at KK037264.1:6661..7727- (Nannochloropsis gaditana)
AAAGGACTTTTTCTCAACCAAACCCGCATGCACACGCACAAGGAATCCTG
TTGAAATCATTCACGTGCGCCATTTTACTGGGTAAAGGTCTTCATTTCCA
CGTGCGGGATATGTGGGTGTCAAGCCATGTCAAGAATGAAGACGTTCGTG
TCTAGTTGAAAATGGGGAAGACGCACATACACTGACGCACAAATGCCATG
TTTCCTCTCTCCCGCGAATCCCGACGTTGAAAAATCCCAACACTGGCTGT
TCCTTCAACGAAGGGAGTGCAAGCTTCCGTGCTCCTCGAAGTGGCGGGGG
AACGGTTTGTCGCGTGTGTGCCACACGTGCAGTGGGATTGCCGGATATAC
TTGAAGAGGTATCTTGCCTTGATGTCGCATTTCCAAAAGTATTTGAGGTG
GAATGCGTGTCACGAAGCCCCCGGCGTCATGTTGAGCCTAGCGAGCCATC
GCTCTCACCTCTGCCGCGGGCCAGTGAGTCAGATGGCAATAGTGAAAGAT
AATTGGCACACGTACGGATCCGATACAGGCGTGCGTCACTGGAAAAGTTG
ACCATGACCTCCTCCAGGACCTTTACACCATTCGCCTTGAGGTTTTTGGA
TGAATCAATCCCGCGACTGATTACCCTTATTGTAATCGCACACTTTTTCG
ATGGAACGACCGTGACAAAGCACTTGACGTCATCGACGCATATCTTGACT
GGCAATGTGGCACACATTGTGCAGCGGGAATTTAGGCGTGTTAAGAGGCT
CGTTGAAGCGATGCCTGTGCCTATAAGGCTCAAGCCTCCAACTCATGCGC
AGGACACATCCCTGTCCGTTTGTATGATTTATCTCCCAAGAAAAGAATCG
AAAATGGCACTACCTCTTGGAGGAATCGATTTGAAGGCCGGGAAAGCGTA
AGCGGTTTGCAACGGGCACCGTGATACTCCCCCTTCCTCCACCGCGGTGG
CCGATGTCCGGAATATAAAAGCCCTCCCGGCCATGGTAAAGAAAATAAAC
CAAACAAGTCTCACACCATGCTTCTTATCGACCCCGATTGGCTCCATGTT
TCTTTTGCGTACTACGA
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Coding sequence (CDS) from alignment at KK037264.1:6661..7727-

>rna10154 ID=rna10154|Name=rna10154|organism=Nannochloropsis gaditana|type=CDS|length=348bp|location=Sequence derived from alignment at KK037264.1:6661..7727- (Nannochloropsis gaditana)
ATGACCTCCTCCAGGACCTTTACACCATTCGCCTTGAGGTTTTTGGATGA
ATCAATCCCGCGACTGATTACCCTTATTGTAATCGCACACTTTTTCGATG
GAACGACCGTGACAAAGCACTTGACGTCATCGACGCATATCTTGACTGGC
AATGTGGCACACATTGTGCAGCGGGAATTTAGGCGTGTTAAGAGGCTCGT
TGAAGCGATGCCTGTGCCTATAAGGCTCAAGCCTCCAACTCATGCGCAGG
ACACATCCCTGTCCGTTTGTATGATTTATCTCCCAAGAAAAGAATCGAAA
ATGGCACTACCTCTTGGAGGAATCGATTTGAAGGCCGGGAAAGCGTAA
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Synonyms
Publications