rna10147, rna10147 (mRNA) Nannochloropsis gaditana

Overview
Namerna10147
Unique Namerna10147
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length252
Alignment locationKK037263.1:63370..64565 -

Link to JBrowse

Properties
Property NameValue
Productvesicle-trafficking protein sec22b
Orig transcript idgnl|cribi|Naga_101069g1.10539.mrna
Orig protein idgnl|cribi|Naga_101069g1.10539
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:63370..64565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101069g1gene9850Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10147rna10147-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20557.1cds10116Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10147 ID=rna10147|Name=rna10147|organism=Nannochloropsis gaditana|type=mRNA|length=252bp
ATGCTGCTGCCAGCCTCTCTCTTCCCTTTCCTTCACATCTCACAGACCTC
CTCCAAGCTCGTCAACGACTCCAAGAAATACAAATGGGGCGCGAAAAAAC
TCTCCATGATGGCGTTGTACCATCAATACGCCCCTTTCCTCCTTATGGGG
GGCATCGCCCTACTTTGCCTAGCCGTAATTTGTGTCCGCTCTCATCCTGC
TTACTTTGCAAAAACTTCAGAGCTCTATGAGTCGGCAAACTTAAGAATGT
AA
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protein sequence of rna10147

>rna10147-protein ID=rna10147-protein|Name=rna10147|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPA
KQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELT
RDFGPEWQRQVETAARPYAFIKFGTSYPVIVGG
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mRNA from alignment at KK037263.1:63370..64565-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10147 ID=rna10147|Name=rna10147|organism=Nannochloropsis gaditana|type=mRNA|length=1196bp|location=Sequence derived from alignment at KK037263.1:63370..64565- (Nannochloropsis gaditana)
ATGATCTACCTCACAATGGTTGCCCGCGTCCAGGATGGACTCTTGTTGGT
ACGTGGAACAACTACAATGTCGGAGCAACTCGCTATCAGGCAGGCACAAA
CCTCCCTCCCTCCCTTGTTCCTTCCCCATTGAACTCAGGTGGCGTCATCA
GACGCCGCCCACGACATGAGCGAGCAGATGGACGTGTATAAGAGCCAAGC
CAAGCAAGTGCTCCGAAAGTTAAACCCCCGGTCGCCGGCGAAGCAGATCA
TTGAGAGCGGGCCGTGCTCGTTTTTGTGCGTAGGGAAGGAAAGAGGGAGG
GAGGAAGGGGAAAGGGGGGGAGGGAGCTGTACCTATGCTTGTCGTTGGAA
ACAGGCTTGGTCTCTCATGCGCTCCACGAAGGGGAGACGAGGAGAGAGGA
CGGAAGGACCGAGCAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGGCAAGCGGAGGCAAGGAAAGGATCGAGCAGACATCCCTTATCTTTCC
TGACCAGTCATCCCTTTCTCCGTCGTTCTACTCTCCATTCACGATAGCTA
CCTTCTGGATCAAAACATTTGTTATCTGGCCCTAGCCGACAAAGGCTACC
CCAAGAAGCTCCTTTTCTCCTACTTGGAAGACATCAAGGACGGCTTCATC
CAAGAATTGACCCGCGACTTTGGTCCAGAGTAAGCCACCGGCTCCCTTCC
GTCCCATGCTGTTTGAAAATTTTGATATTTTGAATTTTTGATTTTATGAA
TTTTTGGTCATTTCGTTCTTACCTTTGGCTTGGTGGATTGGGGGCAGGCG
GTGACCGCGTCGACCACGTCTTCCCCACCGTCACCAGCCGACCAGGTTTC
CCCCGCCCTTTTTTTTCCTAACCCTTATCCATGCATTCATCATTGTTTCT
CACCTCCACCTAGCCCTAACCCTTATCCAAACCCCACAATTGCCGGACTC
CCCACACCTTTTTACTGACTTCTCTCTGGATTTCCCTCCGCATTTTCTCC
TGCACGCCCTGGCTCTCCCTGACCTTTGTCCATGCGCTCCTCCTTTCTTC
TCGCCTATTCCCACACTCACGTCGTCGTCCTGGCTGTTCCACACCCAGGT
GGCAACGCCAAGTCGAAACGGCGGCCCGACCCTACGCTTTCATCAAGTTT
GGTACGTCGTATCCAGTCATTGTCGGAGGGTAGCTTTGTTTCCTTT
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Coding sequence (CDS) from alignment at KK037263.1:63370..64565-

>rna10147 ID=rna10147|Name=rna10147|organism=Nannochloropsis gaditana|type=CDS|length=1608bp|location=Sequence derived from alignment at KK037263.1:63370..64565- (Nannochloropsis gaditana)
GTGGCAACGCCAAGTCGAAACGGCGGCCCGACCCTACGCTTTCATCAAGT
TTGGTACGTCGTATCCAGTCATTGTCGGAGGGTAGCTACCTTCTGGATCA
AAACATTTGTTATCTGGCCCTAGCCGACAAAGGCTACCCCAAGAAGCTCC
TTTTCTCCTACTTGGAAGACATCAAGGACGGCTTCATCCAAGAATTGACC
CGCGACTTTGGTCCAGAGTGGCGTCATCAGACGCCGCCCACGACATGAGC
GAGCAGATGGACGTGTATAAGAGCCAAGCCAAGCAAGTGCTCCGAAAGTT
AAACCCCCGGTCGCCGGCGAAGCAGATCATTGAGAGCGGGCCGTGCTCGT
TTTTATGATCTACCTCACAATGGTTGCCCGCGTCCAGGATGGACTCTTGT
TGGTGGCAACGCCAAGTCGAAACGGCGGCCCGACCCTACGCTTTCATCAA
GTTTGGTACGTCGTATCCAGTCATTGTCGGAGGGTAGCTACCTTCTGGAT
CAAAACATTTGTTATCTGGCCCTAGCCGACAAAGGCTACCCCAAGAAGCT
CCTTTTCTCCTACTTGGAAGACATCAAGGACGGCTTCATCCAAGAATTGA
CCCGCGACTTTGGTCCAGAGTGGCGTCATCAGACGCCGCCCACGACATGA
GCGAGCAGATGGACGTGTATAAGAGCCAAGCCAAGCAAGTGCTCCGAAAG
TTAAACCCCCGGTCGCCGGCGAAGCAGATCATTGAGAGCGGGCCGTGCTC
GTTTTTATGATCTACCTCACAATGGTTGCCCGCGTCCAGGATGGACTCTT
GTTGGTGGCAACGCCAAGTCGAAACGGCGGCCCGACCCTACGCTTTCATC
AAGTTTGGTACGTCGTATCCAGTCATTGTCGGAGGGTAGCTACCTTCTGG
ATCAAAACATTTGTTATCTGGCCCTAGCCGACAAAGGCTACCCCAAGAAG
CTCCTTTTCTCCTACTTGGAAGACATCAAGGACGGCTTCATCCAAGAATT
GACCCGCGACTTTGGTCCAGAGTGGCGTCATCAGACGCCGCCCACGACAT
GAGCGAGCAGATGGACGTGTATAAGAGCCAAGCCAAGCAAGTGCTCCGAA
AGTTAAACCCCCGGTCGCCGGCGAAGCAGATCATTGAGAGCGGGCCGTGC
TCGTTTTTATGATCTACCTCACAATGGTTGCCCGCGTCCAGGATGGACTC
TTGTTGGTGGCAACGCCAAGTCGAAACGGCGGCCCGACCCTACGCTTTCA
TCAAGTTTGGTACGTCGTATCCAGTCATTGTCGGAGGGTAGCTACCTTCT
GGATCAAAACATTTGTTATCTGGCCCTAGCCGACAAAGGCTACCCCAAGA
AGCTCCTTTTCTCCTACTTGGAAGACATCAAGGACGGCTTCATCCAAGAA
TTGACCCGCGACTTTGGTCCAGAGTGGCGTCATCAGACGCCGCCCACGAC
ATGAGCGAGCAGATGGACGTGTATAAGAGCCAAGCCAAGCAAGTGCTCCG
AAAGTTAAACCCCCGGTCGCCGGCGAAGCAGATCATTGAGAGCGGGCCGT
GCTCGTTTTTATGATCTACCTCACAATGGTTGCCCGCGTCCAGGATGGAC
TCTTGTTG
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Synonyms
Publications