EWM20557.1, cds10116 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|585100262|gb|EWM20557.1| (vesicle-trafficking protein sec22b [Nannochloropsis gaditana]) HSP 1 Score: 276.174 bits (705), Expect = 4.123e-94 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 Query: 1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKFGTSYPVIVGG 133 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKFGTSYPVIVGG Sbjct: 1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKFGTSYPVIVGG 133
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|299471660|emb|CBN76882.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus]) HSP 1 Score: 155.221 bits (391), Expect = 4.398e-45 Identity = 75/123 (60.98%), Postives = 94/123 (76.42%), Query Frame = 0 Query: 1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKF 123 M LT VARV DGLLLVAS D+ D + +DV +SQAKQ+L++LNPRS AK IES P F Y+++Q ICYL LA+KGYPK+L F YLE+I F+ EL +D+G +W+ +VETAARPYAFIKF Sbjct: 1 MPVLTFVARVMDGLLLVASMDSGSDSAATVDVCRSQAKQILKRLNPRSVAKCSIESRPYVFHYMIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQDYGEDWRNKVETAARPYAFIKF 123
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|698821771|ref|XP_009843914.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574100973|gb|ETV66543.1| hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 152.525 bits (384), Expect = 5.255e-44 Identity = 71/123 (57.72%), Postives = 89/123 (72.36%), Query Frame = 0 Query: 1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKF 123 M LT +ARV DG+LLVAS ++A D ++ +D YK Q KQ+L+KLN RSP K I+SG +F YL+++ +CYL L+DK YPK+L F YLEDI GFI EL RD G W+ V T ARPYAFIKF Sbjct: 1 MPILTFIARVSDGMLLVASMESAGDYNDNLDTYKQQGKQILKKLNQRSPGKCSIDSGAYAFHYLIEEGVCYLTLSDKNYPKRLAFLYLEDIHGGFIDELRRDHGDNWRDTVTTVARPYAFIKF 123
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|698821769|ref|XP_009843913.1| (hypothetical protein H257_16985 [Aphanomyces astaci] >gi|574100972|gb|ETV66542.1| hypothetical protein H257_16985 [Aphanomyces astaci]) HSP 1 Score: 152.91 bits (385), Expect = 7.285e-44 Identity = 71/123 (57.72%), Postives = 89/123 (72.36%), Query Frame = 0 Query: 1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKF 123 M LT +ARV DG+LLVAS ++A D ++ +D YK Q KQ+L+KLN RSP K I+SG +F YL+++ +CYL L+DK YPK+L F YLEDI GFI EL RD G W+ V T ARPYAFIKF Sbjct: 1 MPILTFIARVSDGMLLVASMESAGDYNDNLDTYKQQGKQILKKLNQRSPGKCSIDSGAYAFHYLIEEGVCYLTLSDKNYPKRLAFLYLEDIHGGFIDELRRDHGDNWRDTVTTVARPYAFIKF 123
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|673047923|ref|XP_008877922.1| (hypothetical protein H310_12576 [Aphanomyces invadans] >gi|574466551|gb|ETV93580.1| hypothetical protein H310_12576 [Aphanomyces invadans]) HSP 1 Score: 151.369 bits (381), Expect = 1.310e-43 Identity = 70/123 (56.91%), Postives = 89/123 (72.36%), Query Frame = 0 Query: 1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKF 123 M LT +ARV DG+LLVAS ++A D ++ +D YK Q KQ+++KLN RSP K I+SG +F YL++ +CYL L+DK YPK+L+F YLEDI GFI EL RD G W+ V T ARPYAFIKF Sbjct: 1 MPILTFIARVSDGMLLVASMESAGDYNDNLDTYKQQGKQIMKKLNQRSPGKCSIDSGAYAFHYLIEDGVCYLTLSDKNYPKRLVFLYLEDIHAGFIDELRRDHGDNWRDTVTTVARPYAFIKF 123
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|1173928554|gb|OQR82114.1| (vesicle-trafficking protein SEC22b [Thraustotheca clavata]) HSP 1 Score: 147.902 bits (372), Expect = 4.070e-42 Identity = 70/123 (56.91%), Postives = 87/123 (70.73%), Query Frame = 0 Query: 1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKF 123 M LT +ARV DG+LLVAS ++A D ++ +D YK Q KQ+++KLN RSP K IESG F YL+D+ CYL L+DK YPK+L F YLE+I GF+ EL RD G W+ V T ARPYAFIKF Sbjct: 1 MPILTFIARVADGMLLVASMESAGDYNDNLDTYKQQGKQIMKKLNQRSPTKCSIESGSYCFHYLIDEGNCYLTLSDKNYPKRLAFLYLEEIHRGFVDELYRDHGENWRVVVTTVARPYAFIKF 123
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|1173928876|gb|OQR82296.1| (vesicle-trafficking protein SEC22b [Achlya hypogyna]) HSP 1 Score: 147.517 bits (371), Expect = 4.791e-42 Identity = 68/123 (55.28%), Postives = 86/123 (69.92%), Query Frame = 0 Query: 1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKF 123 M LT +ARV DG++LVAS ++A D ++ +D YK Q KQ+++KLN RSP K IESGP F YL++ CYL +DK YPK+L F YLE+I GF+ EL RD G W+ V T ARPYAFIKF Sbjct: 1 MPILTFIARVSDGMILVASMESAGDYNDNLDTYKQQGKQIMKKLNQRSPTKCSIESGPYCFHYLIEDGNCYLTFSDKNYPKRLAFLYLEEIHVGFVDELQRDHGDNWRNTVTTVARPYAFIKF 123
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|570334097|gb|ETO82045.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1976]) HSP 1 Score: 147.902 bits (372), Expect = 5.888e-42 Identity = 67/124 (54.03%), Postives = 90/124 (72.58%), Query Frame = 0 Query: 1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKFG 124 M +T VARV DG+LLVAS ++ D + +D YK QAKQ++++L+ RSP K IESG +F YL+ + +CYL LAD+G+PK+L F YLE++ GF++EL RD G W+ V T ARPYAFIKFG Sbjct: 1 MPIITFVARVSDGMLLVASMESIGDANGNLDTYKQQAKQIMKRLDQRSPTKCSIESGAYTFHYLIQEGVCYLTLADRGFPKRLAFLYLEEVHAGFVEELERDSGSNWRDVVTTVARPYAFIKFG 124
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|675184013|ref|XP_008900891.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|566030449|gb|ETI53360.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567968053|gb|ETK93207.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567996514|gb|ETL46622.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568025764|gb|ETL99768.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568056199|gb|ETM52911.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568099105|gb|ETN13823.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|570958169|gb|ETP23148.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >gi|570993938|gb|ETP51160.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297]) HSP 1 Score: 147.902 bits (372), Expect = 6.017e-42 Identity = 67/124 (54.03%), Postives = 90/124 (72.58%), Query Frame = 0 Query: 1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKFG 124 M +T VARV DG+LLVAS ++ D + +D YK QAKQ++++L+ RSP K IESG +F YL+ + +CYL LAD+G+PK+L F YLE++ GF++EL RD G W+ V T ARPYAFIKFG Sbjct: 1 MPIITFVARVSDGMLLVASMESIGDANGNLDTYKQQAKQIMKRLDQRSPTKCSIESGAYTFHYLIQEGVCYLTLADRGFPKRLAFLYLEEVHAGFVEELERDSGSNWRDVVTTVARPYAFIKFG 124
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|813135270|ref|XP_012198434.1| (hypothetical protein SPRG_04635 [Saprolegnia parasitica CBS 223.65] >gi|641536863|gb|KDO30734.1| hypothetical protein SPRG_04635 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 147.132 bits (370), Expect = 7.240e-42 Identity = 68/123 (55.28%), Postives = 86/123 (69.92%), Query Frame = 0 Query: 1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKF 123 M LT +ARV DG++LVAS ++A D + +D YK Q KQ+++KLN RSP K IESGP F YL+++ CYL +DK YPK+L F YLE+I GF+ EL RD G W+ V T ARPYAFIKF Sbjct: 1 MPILTFIARVSDGMILVASMESAGDYHDNLDTYKQQGKQIMKKLNQRSPTKCSIESGPYCFHYLIEEGNCYLTFSDKNYPKRLAFLYLEEIHAGFVDELQRDHGDNWRDTVTTIARPYAFIKF 123 The following BLAST results are available for this feature:
BLAST of EWM20557.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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