EWM20557.1, cds10116 (CDS) Nannochloropsis gaditana

Overview
NameEWM20557.1
Unique Namecds10116
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037263.1:64518..64565 -
Alignment locationKK037263.1:64291..64427 -
Alignment locationKK037263.1:63887..64018 -
Alignment locationKK037263.1:63383..63467 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20557.1
Productvesicle-trafficking protein sec22b
Orig transcript idgnl|cribi|Naga_101069g1.10539.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:64518..64565 -
KK037263.1supercontigKK037263.1:64291..64427 -
KK037263.1supercontigKK037263.1:63887..64018 -
KK037263.1supercontigKK037263.1:63383..63467 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR010908Longin_dom
Homology
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|585100262|gb|EWM20557.1| (vesicle-trafficking protein sec22b [Nannochloropsis gaditana])

HSP 1 Score: 276.174 bits (705), Expect = 4.123e-94
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKFGTSYPVIVGG 133
            MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKFGTSYPVIVGG
Sbjct:    1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKFGTSYPVIVGG 133          
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|299471660|emb|CBN76882.1| (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 155.221 bits (391), Expect = 4.398e-45
Identity = 75/123 (60.98%), Postives = 94/123 (76.42%), Query Frame = 0
Query:    1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKF 123
            M  LT VARV DGLLLVAS D+  D +  +DV +SQAKQ+L++LNPRS AK  IES P  F Y+++Q ICYL LA+KGYPK+L F YLE+I   F+ EL +D+G +W+ +VETAARPYAFIKF
Sbjct:    1 MPVLTFVARVMDGLLLVASMDSGSDSAATVDVCRSQAKQILKRLNPRSVAKCSIESRPYVFHYMIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQDYGEDWRNKVETAARPYAFIKF 123          
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|698821771|ref|XP_009843914.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574100973|gb|ETV66543.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 152.525 bits (384), Expect = 5.255e-44
Identity = 71/123 (57.72%), Postives = 89/123 (72.36%), Query Frame = 0
Query:    1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKF 123
            M  LT +ARV DG+LLVAS ++A D ++ +D YK Q KQ+L+KLN RSP K  I+SG  +F YL+++ +CYL L+DK YPK+L F YLEDI  GFI EL RD G  W+  V T ARPYAFIKF
Sbjct:    1 MPILTFIARVSDGMLLVASMESAGDYNDNLDTYKQQGKQILKKLNQRSPGKCSIDSGAYAFHYLIEEGVCYLTLSDKNYPKRLAFLYLEDIHGGFIDELRRDHGDNWRDTVTTVARPYAFIKF 123          
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|698821769|ref|XP_009843913.1| (hypothetical protein H257_16985 [Aphanomyces astaci] >gi|574100972|gb|ETV66542.1| hypothetical protein H257_16985 [Aphanomyces astaci])

HSP 1 Score: 152.91 bits (385), Expect = 7.285e-44
Identity = 71/123 (57.72%), Postives = 89/123 (72.36%), Query Frame = 0
Query:    1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKF 123
            M  LT +ARV DG+LLVAS ++A D ++ +D YK Q KQ+L+KLN RSP K  I+SG  +F YL+++ +CYL L+DK YPK+L F YLEDI  GFI EL RD G  W+  V T ARPYAFIKF
Sbjct:    1 MPILTFIARVSDGMLLVASMESAGDYNDNLDTYKQQGKQILKKLNQRSPGKCSIDSGAYAFHYLIEEGVCYLTLSDKNYPKRLAFLYLEDIHGGFIDELRRDHGDNWRDTVTTVARPYAFIKF 123          
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|673047923|ref|XP_008877922.1| (hypothetical protein H310_12576 [Aphanomyces invadans] >gi|574466551|gb|ETV93580.1| hypothetical protein H310_12576 [Aphanomyces invadans])

HSP 1 Score: 151.369 bits (381), Expect = 1.310e-43
Identity = 70/123 (56.91%), Postives = 89/123 (72.36%), Query Frame = 0
Query:    1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKF 123
            M  LT +ARV DG+LLVAS ++A D ++ +D YK Q KQ+++KLN RSP K  I+SG  +F YL++  +CYL L+DK YPK+L+F YLEDI  GFI EL RD G  W+  V T ARPYAFIKF
Sbjct:    1 MPILTFIARVSDGMLLVASMESAGDYNDNLDTYKQQGKQIMKKLNQRSPGKCSIDSGAYAFHYLIEDGVCYLTLSDKNYPKRLVFLYLEDIHAGFIDELRRDHGDNWRDTVTTVARPYAFIKF 123          
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|1173928554|gb|OQR82114.1| (vesicle-trafficking protein SEC22b [Thraustotheca clavata])

HSP 1 Score: 147.902 bits (372), Expect = 4.070e-42
Identity = 70/123 (56.91%), Postives = 87/123 (70.73%), Query Frame = 0
Query:    1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKF 123
            M  LT +ARV DG+LLVAS ++A D ++ +D YK Q KQ+++KLN RSP K  IESG   F YL+D+  CYL L+DK YPK+L F YLE+I  GF+ EL RD G  W+  V T ARPYAFIKF
Sbjct:    1 MPILTFIARVADGMLLVASMESAGDYNDNLDTYKQQGKQIMKKLNQRSPTKCSIESGSYCFHYLIDEGNCYLTLSDKNYPKRLAFLYLEEIHRGFVDELYRDHGENWRVVVTTVARPYAFIKF 123          
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|1173928876|gb|OQR82296.1| (vesicle-trafficking protein SEC22b [Achlya hypogyna])

HSP 1 Score: 147.517 bits (371), Expect = 4.791e-42
Identity = 68/123 (55.28%), Postives = 86/123 (69.92%), Query Frame = 0
Query:    1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKF 123
            M  LT +ARV DG++LVAS ++A D ++ +D YK Q KQ+++KLN RSP K  IESGP  F YL++   CYL  +DK YPK+L F YLE+I  GF+ EL RD G  W+  V T ARPYAFIKF
Sbjct:    1 MPILTFIARVSDGMILVASMESAGDYNDNLDTYKQQGKQIMKKLNQRSPTKCSIESGPYCFHYLIEDGNCYLTFSDKNYPKRLAFLYLEEIHVGFVDELQRDHGDNWRNTVTTVARPYAFIKF 123          
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|570334097|gb|ETO82045.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1976])

HSP 1 Score: 147.902 bits (372), Expect = 5.888e-42
Identity = 67/124 (54.03%), Postives = 90/124 (72.58%), Query Frame = 0
Query:    1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKFG 124
            M  +T VARV DG+LLVAS ++  D +  +D YK QAKQ++++L+ RSP K  IESG  +F YL+ + +CYL LAD+G+PK+L F YLE++  GF++EL RD G  W+  V T ARPYAFIKFG
Sbjct:    1 MPIITFVARVSDGMLLVASMESIGDANGNLDTYKQQAKQIMKRLDQRSPTKCSIESGAYTFHYLIQEGVCYLTLADRGFPKRLAFLYLEEVHAGFVEELERDSGSNWRDVVTTVARPYAFIKFG 124          
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|675184013|ref|XP_008900891.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|566030449|gb|ETI53360.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567968053|gb|ETK93207.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567996514|gb|ETL46622.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568025764|gb|ETL99768.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568056199|gb|ETM52911.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568099105|gb|ETN13823.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|570958169|gb|ETP23148.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >gi|570993938|gb|ETP51160.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 147.902 bits (372), Expect = 6.017e-42
Identity = 67/124 (54.03%), Postives = 90/124 (72.58%), Query Frame = 0
Query:    1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKFG 124
            M  +T VARV DG+LLVAS ++  D +  +D YK QAKQ++++L+ RSP K  IESG  +F YL+ + +CYL LAD+G+PK+L F YLE++  GF++EL RD G  W+  V T ARPYAFIKFG
Sbjct:    1 MPIITFVARVSDGMLLVASMESIGDANGNLDTYKQQAKQIMKRLDQRSPTKCSIESGAYTFHYLIQEGVCYLTLADRGFPKRLAFLYLEEVHAGFVEELERDSGSNWRDVVTTVARPYAFIKFG 124          
BLAST of EWM20557.1 vs. NCBI_GenBank
Match: gi|813135270|ref|XP_012198434.1| (hypothetical protein SPRG_04635 [Saprolegnia parasitica CBS 223.65] >gi|641536863|gb|KDO30734.1| hypothetical protein SPRG_04635 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 147.132 bits (370), Expect = 7.240e-42
Identity = 68/123 (55.28%), Postives = 86/123 (69.92%), Query Frame = 0
Query:    1 MIYLTMVARVQDGLLLVASSDAAHDMSEQMDVYKSQAKQVLRKLNPRSPAKQIIESGPCSFFYLLDQNICYLALADKGYPKKLLFSYLEDIKDGFIQELTRDFGPEWQRQVETAARPYAFIKF 123
            M  LT +ARV DG++LVAS ++A D  + +D YK Q KQ+++KLN RSP K  IESGP  F YL+++  CYL  +DK YPK+L F YLE+I  GF+ EL RD G  W+  V T ARPYAFIKF
Sbjct:    1 MPILTFIARVSDGMILVASMESAGDYHDNLDTYKQQGKQIMKKLNQRSPTKCSIESGPYCFHYLIEEGNCYLTFSDKNYPKRLAFLYLEEIHAGFVDELQRDHGDNWRDTVTTIARPYAFIKF 123          
The following BLAST results are available for this feature:
BLAST of EWM20557.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100262|gb|EWM20557.1|4.123e-94100.00vesicle-trafficking protein sec22b [Nannochloropsi... [more]
gi|299471660|emb|CBN76882.1|4.398e-4560.98Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
gi|698821771|ref|XP_009843914.1|5.255e-4457.72hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|698821769|ref|XP_009843913.1|7.285e-4457.72hypothetical protein H257_16985 [Aphanomyces astac... [more]
gi|673047923|ref|XP_008877922.1|1.310e-4356.91hypothetical protein H310_12576 [Aphanomyces invad... [more]
gi|1173928554|gb|OQR82114.1|4.070e-4256.91vesicle-trafficking protein SEC22b [Thraustotheca ... [more]
gi|1173928876|gb|OQR82296.1|4.791e-4255.28vesicle-trafficking protein SEC22b [Achlya hypogyn... [more]
gi|570334097|gb|ETO82045.1|5.888e-4254.03hypothetical protein, variant 2 [Phytophthora para... [more]
gi|675184013|ref|XP_008900891.1|6.017e-4254.03hypothetical protein, variant 2 [Phytophthora para... [more]
gi|813135270|ref|XP_012198434.1|7.240e-4255.28hypothetical protein SPRG_04635 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10147rna10147Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications