rna10144, rna10144 (mRNA) Nannochloropsis gaditana

Overview
Namerna10144
Unique Namerna10144
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length280
Alignment locationKK037263.1:55090..55752 +

Link to JBrowse

Properties
Property NameValue
Productiron ascorbate oxidoreductase
Orig transcript idgnl|cribi|Naga_101955g1.3147.mrna
Orig protein idgnl|cribi|Naga_101955g1.3147
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:55090..55752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101955g1gene9847Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10144rna10144-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20560.1cds10113Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10144 ID=rna10144|Name=rna10144|organism=Nannochloropsis gaditana|type=mRNA|length=280bp
TCCCTCTCTCCCACAGAATGTTGCCCTCATGCGCGAAAAAGTCCACCTTT
CCTCGACCGTTACCAAGCTGCAAAGCCGAAACGAGGTGTTGGAAACCCAA
CTAGTGAAACGGTTCGAGCAGTTTGAAAATTTGAACGCCAAGCTCGCCGA
CAACGAAAAGGAATTGGTGAAGCTCAAGGAGGGAGAGCGGCGGAGAAAGT
ACTTGGAACTGGAAAATGAGCGGCTCCGGGTATTTTTGCGTCAACGAAAG
GAATCGGGGAAGGCAGGAGGAAGAGGCTGA
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protein sequence of rna10144

>rna10144-protein ID=rna10144-protein|Name=rna10144|organism=Nannochloropsis gaditana|type=polypeptide|length=119bp
MRTGLCRICRRPGRSYRRPSFPLPEGTVCRLSSSFSTTTIPVIDLSPFVD
PHASESSKKQCAEAVHHAAVNVGFLYVKNHGVDPSITDGARAHARAFFSL
PQVRAPRKEGEREGGREGG
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mRNA from alignment at KK037263.1:55090..55752+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10144 ID=rna10144|Name=rna10144|organism=Nannochloropsis gaditana|type=mRNA|length=663bp|location=Sequence derived from alignment at KK037263.1:55090..55752+ (Nannochloropsis gaditana)
CCGCACAGTGTAGGAACGTAGCATGCGTACAGGCCTGTGCAGAATCTGCC
GTCGTCCCGGACGGTCCTATCgacgtccttcctttccccttcccgaaGGC
ACTGTCTGccgcttgtcttcctccttctccaccaccaccattcCTGTGAT
TGACTTGAGCCCTTTCGTAGACCCACACGCCTCCGAAAGCTCAAAAAAAC
AGTGTGCAGAGGCTGTGCATCATGTAAGGGCGAGCGGGGGGTATTGAGAC
GGGGACTTGGTGTAAGGAGGTTAATAAATCGGCATAAGTAAGGCAGGTTG
AAgatgcaggggaaggggggggggcttttTACCCCTTTATTGTGACATTT
tcttggaagaggtggaagcgggTAAAAtcagggtaggagggaagggtgtt
TGCATAGCTTATCAAACTGCCGCCACGCTCCCTTTTCTattccttccttc
actcATTTCTCCCACACACACAACCGtgcctccatccttccttcatttGG
CCGCAGGCGGCCGTCAATGTGGGCTTTCTCTATGTTAAAAACCATGGGGT
AGACCCGAGTATCACGGACGGGGCACGTGCACATGCGCgtgctttttttt
ccctccctcaggtgCGTGCAccaaggaaggaaggagagagggagggaggg
agggagggaggga
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Coding sequence (CDS) from alignment at KK037263.1:55090..55752+

>rna10144 ID=rna10144|Name=rna10144|organism=Nannochloropsis gaditana|type=CDS|length=716bp|location=Sequence derived from alignment at KK037263.1:55090..55752+ (Nannochloropsis gaditana)
ATGCGTACAGGCCTGTGCAGAATCTGCCGTCGTCCCGGACGGTCCTATCg
acgtccttcctttccccttcccgaaGGCACTGTCTGccgcttgtcttcct
ccttctccaccaccaccattcCTGTGATTGACTTGAGCCCTTTCGTAGAC
CCACACGCCTCCGAAAGCTCAAAAAAACAGTGTGCAGAGGCTGTGCATCA
TGCGGCCGTCAATGTGGGCTTTCTCTATGTTAAAAACCATGGGGTAGACC
CGAGTATCACGGACGGGGCACGTGCACATGCGCgtgcttttttttccctc
cctcaggtgCGTGCAccaaggaaggaaggagagagggagggagggaggga
gggagggaATGCGTACAGGCCTGTGCAGAATCTGCCGTCGTCCCGGACGG
TCCTATCgacgtccttcctttccccttcccgaaGGCACTGTCTGccgctt
gtcttcctccttctccaccaccaccattcCTGTGATTGACTTGAGCCCTT
TCGTAGACCCACACGCCTCCGAAAGCTCAAAAAAACAGTGTGCAGAGGCT
GTGCATCATGCGGCCGTCAATGTGGGCTTTCTCTATGTTAAAAACCATGG
GGTAGACCCGAGTATCACGGACGGGGCACGTGCACATGCGCgtgcttttt
tttccctccctcaggtgCGTGCAccaaggaaggaaggagagagggaggga
gggagggagggaggga
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Synonyms
Publications