EWM20560.1, cds10113 (CDS) Nannochloropsis gaditana

Overview
NameEWM20560.1
Unique Namecds10113
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037263.1:55112..55312 +
Alignment locationKK037263.1:55596..55752 +

Link to JBrowse

Properties
Property NameValue
End range.
End range55752
Protein idEWM20560.1
Productiron ascorbate oxidoreductase
Partialtrue
Orig transcript idgnl|cribi|Naga_101955g1.3147.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:55112..55312 +
KK037263.1supercontigKK037263.1:55596..55752 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR027443IPNS-like
IPR026992DIOX_N
Homology
BLAST of EWM20560.1 vs. NCBI_GenBank
Match: gi|585100269|gb|EWM20560.1| (iron ascorbate oxidoreductase, partial [Nannochloropsis gaditana])

HSP 1 Score: 243.432 bits (620), Expect = 1.315e-81
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query:    1 MRTGLCRICRRPGRSYRRPSFPLPEGTVCRLSSSFSTTTIPVIDLSPFVDPHASESSKKQCAEAVHHAAVNVGFLYVKNHGVDPSITDGARAHARAFFSLPQVRAPRKEGEREGGREGG 119
            MRTGLCRICRRPGRSYRRPSFPLPEGTVCRLSSSFSTTTIPVIDLSPFVDPHASESSKKQCAEAVHHAAVNVGFLYVKNHGVDPSITDGARAHARAFFSLPQVRAPRKEGEREGGREGG
Sbjct:    1 MRTGLCRICRRPGRSYRRPSFPLPEGTVCRLSSSFSTTTIPVIDLSPFVDPHASESSKKQCAEAVHHAAVNVGFLYVKNHGVDPSITDGARAHARAFFSLPQVRAPRKEGEREGGREGG 119          
BLAST of EWM20560.1 vs. NCBI_GenBank
Match: gi|1011961887|ref|WP_062768296.1| (2OG-Fe(II) oxygenase [Tistrella mobilis] >gi|1011734141|gb|KYO50400.1| 2OG-Fe(II) oxygenase [Tistrella mobilis])

HSP 1 Score: 71.2478 bits (173), Expect = 4.078e-12
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 0
Query:   34 SFSTTTIPVIDLSPFVDPHASESSKKQCAEAVHHAAVNVGFLYVKNHGVDPSITDGARAHARAFFSLPQ 102
            S + T IPVID    VDP ++ + +    +AV  A   VGF YV+NHGVDPS+ DG    AR FF+LP 
Sbjct:   22 SLAFTEIPVIDFGALVDPASTPAERLAVGDAVRDACTRVGFFYVRNHGVDPSVIDGTYRAARDFFALPM 90          
BLAST of EWM20560.1 vs. NCBI_GenBank
Match: gi|504557280|ref|WP_014744382.1| (2OG-Fe(II) oxygenase [Tistrella mobilis] >gi|388527506|gb|AFK52703.1| putative iron/ascorbate oxidoreductase [Tistrella mobilis KA081020-065])

HSP 1 Score: 70.0922 bits (170), Expect = 9.407e-12
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 0
Query:   34 SFSTTTIPVIDLSPFVDPHASESSKKQCAEAVHHAAVNVGFLYVKNHGVDPSITDGARAHARAFFSLPQ 102
            S + T IPVID    VDP ++++ +    +AV  A   VGF YV+NHGVDP++  G    AR FF+LP 
Sbjct:   22 SLAFTEIPVIDFGALVDPASTQAERMAVGDAVRDACTRVGFFYVRNHGVDPAVISGTYGAARDFFALPM 90          
BLAST of EWM20560.1 vs. NCBI_GenBank
Match: gi|627916506|ref|XP_007691696.1| (hypothetical protein COCMIDRAFT_105249 [Bipolaris oryzae ATCC 44560] >gi|576928138|gb|EUC41792.1| hypothetical protein COCMIDRAFT_105249 [Bipolaris oryzae ATCC 44560])

HSP 1 Score: 67.0106 bits (162), Expect = 1.490e-10
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 0
Query:   37 TTTIPVIDLSPFVDPHASESSKKQCAEAVHHAAVNVGFLYVKNHGVDPSITDGARAHARAFFSLPQVRAPRKEGEREGGREGG 119
            T+ +P ID+SPF++P +  SS++Q A+A++ A    GF Y+  HG+  S  D   + AR FF+LP     + E    G R+GG
Sbjct:   49 TSILPKIDISPFLNPSSPASSRRQTAQAINAACTTYGFFYLTGHGIPQSQLDSVISLARQFFALPLSEKLKIERLDAGTRQGG 131          
BLAST of EWM20560.1 vs. NCBI_GenBank
Match: gi|1029187612|gb|OAL52175.1| (Clavaminate synthase-like protein [Pyrenochaeta sp. DS3sAY3a])

HSP 1 Score: 65.855 bits (159), Expect = 2.966e-10
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 0
Query:   40 IPVIDLSPFVDPHASESSKKQCAEAVHHAAVNVGFLYVKNHGVDPSITDGARAHARAFFSLPQVRAPRKEGEREGGREGG 119
            +P+ID+S F+D +A+  +++  A+A++ A VN GF Y+  HG+ PS  D   A AR+FF+LP     + +    GG EGG
Sbjct:   47 LPIIDISAFLDANATREARQTTAKAINAACVNYGFFYLTGHGIPPSKLDEIIALARSFFALPLDEKNKIKRFDAGGPEGG 126          
BLAST of EWM20560.1 vs. NCBI_GenBank
Match: gi|1110595546|emb|CZR56842.1| (related to gibberellin 20-oxidase [Phialocephala subalpina])

HSP 1 Score: 65.4698 bits (158), Expect = 3.951e-10
Identity = 27/71 (38.03%), Postives = 49/71 (69.01%), Query Frame = 0
Query:   32 SSSFSTTTIPVIDLSPFVDPHASESSKKQCAEAVHHAAVNVGFLYVKNHGVDPSITDGARAHARAFFSLPQ 102
            S++ S T +P+IDL+PF+ P ++  S+ QCA+++ HA    GF+Y+ NHG+ P++   A + ++ FF+L +
Sbjct:    3 STTESPTQLPIIDLTPFLSPTSTPQSRLQCAKSLVHACHTTGFIYITNHGIPPALLSEAFSWSKRFFALSE 73          
BLAST of EWM20560.1 vs. NCBI_GenBank
Match: gi|1188282068|gb|OSS50956.1| (hypothetical protein B5807_04334 [Epicoccum nigrum])

HSP 1 Score: 65.0846 bits (157), Expect = 5.436e-10
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 0
Query:   40 IPVIDLSPFVDPHASESSKKQCAEAVHHAAVNVGFLYVKNHGVDPSITDGARAHARAFFSLPQVRAPRKEGEREGGREGG 119
            +P+ID+S F+DP++S S ++  A+A++ A VN GF Y+  HG+  +  D     AR FF+LP  R  + +    GG EGG
Sbjct:   50 LPIIDISSFLDPNSSTSDRQTTAQAINAACVNYGFFYLTGHGIPTAKLDEIIDLARRFFALPLDRKNQIKRFDAGGPEGG 129          
BLAST of EWM20560.1 vs. NCBI_GenBank
Match: gi|1190900562|gb|OTA90744.1| (hypothetical protein M434DRAFT_77399 [Hypoxylon sp. CO27-5])

HSP 1 Score: 64.6994 bits (156), Expect = 7.066e-10
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = 0
Query:   40 IPVIDLSPFVDPHASESSKKQCAEAVHHAAVNVGFLYVKNHGVDPSITDGARAHARAFFSLPQ 102
            IP +D+SPF DP+ASE +K    +AV HA    GF Y+  HGV     +G    A+ FF LPQ
Sbjct:   15 IPTVDISPFTDPNASEEAKNAVVDAVRHACTTYGFFYLAGHGVSAEQREGILNCAKKFFELPQ 77          
BLAST of EWM20560.1 vs. NCBI_GenBank
Match: gi|1055458641|ref|WP_067119042.1| (oxidoreductase [Streptomyces yokosukanensis] >gi|973838411|gb|KUN08729.1| oxidoreductase [Streptomyces yokosukanensis])

HSP 1 Score: 64.3142 bits (155), Expect = 9.798e-10
Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 0
Query:   31 LSSSFSTTTIPVIDLSPFVDPHASESSKKQCAEAVHHAAVNVGFLYVKNHGVDPSITDGARAHARAFFSLPQVRAPRKEGEREGGR 116
            + +S S+  +PVIDL P++D    E+++   A  V  A    GFL V  HGVDP +  G RA ARAFF LP+    ++   R GGR
Sbjct:    1 MRTSVSSARVPVIDLRPWLD--GDEAARTALARTVDEALQTAGFLLVTGHGVDPGLRFGIRAAARAFFLLPEA-VKQRYAVRVGGR 83          
BLAST of EWM20560.1 vs. NCBI_GenBank
Match: gi|1190918778|gb|OTB07896.1| (hypothetical protein M426DRAFT_52668 [Hypoxylon sp. CI-4A])

HSP 1 Score: 64.3142 bits (155), Expect = 1.137e-9
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 0
Query:   26 GTVCRLSSSFSTTTIPVIDLSPFVDPHASESSKKQCAEAVHHAAVNVGFLYVKNHGVDPSITDGARAHARAFFSLPQ 102
            GT+ ++  + +   IP +D+SPF DP ASE +K+   +A+ HA    GF Y+  HGV P   +G    A+ FF+L Q
Sbjct:    2 GTIEKIPET-APDAIPTVDISPFTDPKASEEAKRGVVDAIRHACTTYGFFYLAGHGVTPEKREGILDCAKRFFTLSQ 77          
The following BLAST results are available for this feature:
BLAST of EWM20560.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100269|gb|EWM20560.1|1.315e-81100.00iron ascorbate oxidoreductase, partial [Nannochlor... [more]
gi|1011961887|ref|WP_062768296.1|4.078e-1247.832OG-Fe(II) oxygenase [Tistrella mobilis] >gi|10117... [more]
gi|504557280|ref|WP_014744382.1|9.407e-1244.932OG-Fe(II) oxygenase [Tistrella mobilis] >gi|38852... [more]
gi|627916506|ref|XP_007691696.1|1.490e-1038.55hypothetical protein COCMIDRAFT_105249 [Bipolaris ... [more]
gi|1029187612|gb|OAL52175.1|2.966e-1040.00Clavaminate synthase-like protein [Pyrenochaeta sp... [more]
gi|1110595546|emb|CZR56842.1|3.951e-1038.03related to gibberellin 20-oxidase [Phialocephala s... [more]
gi|1188282068|gb|OSS50956.1|5.436e-1040.00hypothetical protein B5807_04334 [Epicoccum nigrum... [more]
gi|1190900562|gb|OTA90744.1|7.066e-1046.03hypothetical protein M434DRAFT_77399 [Hypoxylon sp... [more]
gi|1055458641|ref|WP_067119042.1|9.798e-1041.86oxidoreductase [Streptomyces yokosukanensis] >gi|9... [more]
gi|1190918778|gb|OTB07896.1|1.137e-938.96hypothetical protein M426DRAFT_52668 [Hypoxylon sp... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10144rna10144Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications