rna10132, rna10132 (mRNA) Nannochloropsis gaditana

Overview
Namerna10132
Unique Namerna10132
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1485
Alignment locationKK037263.1:23644..24685 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101330g1.3584.mrna
Orig protein idgnl|cribi|Naga_101330g1.3584
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:23644..24685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101330g1gene9835Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10132rna10132-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20572.1cds10101Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10132 ID=rna10132|Name=rna10132|organism=Nannochloropsis gaditana|type=mRNA|length=1485bp
TGCCAGGCTATCCAGACGACGGTCAGATTATGCGGCAATTAATGCCTGGT
CGGGCAGCGTTCTTGGAGGATCGCCTCTTCAATTCTTATAGTGGTTGTTC
ACGCCCTTTTAGTGCTTGGAGTTGATCGCTCTCCTAAACTCTGATCGTGG
TTGTTCACGCCCTTGTAGGATAGATGTTAATCAATGGGACATATAAAGAG
ATTATTCCAAGCTTTGCGCTCTTATCATTTCTTCTGCTTGTGATCAAAGC
TATTGATTTGACTCCTTAGTGGAGGTATCAATTACCATTTAAATTTCATA
GGACAAAAAAACAAAGGAAAGTGCTAACCATTCAGAGAAATTCAAAAGGA
AGATCTATTCCACATTGCTAGTCATCGTGGAATTATGACGTATGCAGAAA
TGGCAAAGTTGATCCTCCTTTTCATCCTGCGTATAGACTATCTTCAAGAT
GTGCAAGAAATAATAACACTTCGCCTGGGCGACGATTTGAAAAACACGCT
TTCAGGTCAACTTCGCAGTGACCTCATCTGTGCTTGATTTGTCAGATTTA
CTTTCAGAGCGAGCTTATCTTCACCCTCCATGTTTTTCTCGATCGCTGAG
CTTTCCTTCTGCGAATTGCTCCCCTTCCAACCTATTTCCCTGCGCGATTC
TATGTCCTACCACGCTCTGCACTGCGTACAGTGCTCTCTCAATCCGTGTT
GAAGAGTTCAATCATCGTCCGATCGGCGCTGACCCGGAAAACGTCAGCCT
CCACATAGAAATCCAGCATCTCCCGTAATTGTTCTGTGGGAGAAACGACG
GAAGAAAAGGAAAGGGGGAGAAAGCAGACGATGAGAACGACGTGAGAAGC
CAAAAATGCGATCGAAGGACGGCAATTTGGGAGCGACTTTCTTAGCAATG
AGACGGTGCATGAGCGACAAGAAACGGACGAAAGCGGACCACCATTCGAG
GGACGGGAGGAAGGGAGAGAGGAAGGGAGGGAGGGAGGGCGCACGCGTGC
TTCTTACCCGTCTTCCACCCCTTCTGTACGACCATGGCCTCTGCTCGAAT
ATACTCCAGACGGGCGAGACGGTGGCTTTGCATGTAGTCGAGGATGAGGG
AATAGACCTTGCTCATGTCGTCCCGGCTGTCCCGGTTCTCGTCCTCCTCG
TCGTCCAGGAGGGAAATCTGCCGTGTGATGGCGAAGGGAACAGGTGGGGA
GGGAGGAAAGGAGGAAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGAACCT
TAAGGCCTCGGCGGATGGCAGTGTCTCCCGGTGGGTGCTTGTCGCCAGTT
TTGGTGGCCTGCAAGCTCCATGCCTCTCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCTCCCTTCCACCTTGGACATGCGGGTGAGGCGGA
TGGCCTCCTCCACGTCGGCAACATTCACAGTGTCGTCGAAGCGGAGCCGA
GCCAGAGCCTACCACCCGGAGGAAAGAGGAAGGGA
back to top

protein sequence of rna10132

>rna10132-protein ID=rna10132-protein|Name=rna10132|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MAGGVAFPPFPPLSSCLWFQYGAHFPPSCPTPVPNVINNQQLSQNMAAAP
PSRGMEGGGPRQPSGLGGNVGLGGISTEGMEDLPKYDEEISKCKRFLLEF
EDGEVVNIEGGEDGEAAGLGIGRKKYKILMQRIADRELSSLLVETDDILA
YPQLLSVAEGDSVEDF
back to top

mRNA from alignment at KK037263.1:23644..24685-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10132 ID=rna10132|Name=rna10132|organism=Nannochloropsis gaditana|type=mRNA|length=1042bp|location=Sequence derived from alignment at KK037263.1:23644..24685- (Nannochloropsis gaditana)
ATGGCAGGAGGCGTCGCTTTTCCTCCCTTCCCGCCCCTGTCGTCCTGCCT
TTGGTTCCAATATGGCGCTCACTTTCCTCCTTCCTGTCCAACACCTGTAC
CAAACGTAATAAATAACCAGCAGCTGAGTCAGAACATGGCTGCGGCTCCT
CCTTCCAGAGGAATGGAGGGTGGAGGTCCACGACAACCAAGTGGTTTGGG
CGGGAACGTCGGTAAGGACTGCCATGTACCGCTTCTCCACCCTCTTCTCC
TCCGCCCTCTTTTCTTTTGTTCCGAGAGTTGTTCCTGTCTCACGCATCCC
TTTGGTGCGTTGTCGCACGTGGACAGGCTTGGGCGGGATCAGCACTGAAG
GAATGGAGGACTTGCCGAAATACGATGAGGAGGTGAGCGCAGGGTATATG
CCCGCTAGACTCGTATGCGGCGCGGGGTACTCCTCCTTGGTCCTGTTGAA
GCCTCGACAAAGACGGCCATTGAAGCACTTGATTTCCATTTTTTCCTCTT
TTTTTATTCCTCTCGGCGGACGTGGCACTGAGATCCCGTCCTCCCTCTCT
CCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGGTAGA
TCTCGAAATGTAAACGTTTTCTGCTCGAATTTGAGGATGGAGAGGTGGTG
AACATAGAAGGAGGGGAGGATGGTGAAGCCGCCGGGTTAGGCATCGGTCG
TAAAAAATACAAAATCTTAATGCAACGGGTAATTTGGGGCGAGAGAAGGG
GAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGACATCGATGGACGATGCT
TTTAGGCTGACGCACAACATTTTTTGCTTGTCTCTGCATCTTTTTGTTCC
TCGACGCTCATCGTCCTTCCTCCCTCCCCTCCTTCCCCCCTCCTTCCCTC
CCTCCCTCCCTTCCTTCCCGGTCACCCTATTCGACCTCAGATCGCCGACA
GGGAGCTTTCCTCCCTTCTGGTGGAGACGGATGATATTCTCGCATACCCC
CAGCTTCTCTCCGTGGCAGAAGGCGACAGCGTGGAAGATTTC
back to top

Coding sequence (CDS) from alignment at KK037263.1:23644..24685-

>rna10132 ID=rna10132|Name=rna10132|organism=Nannochloropsis gaditana|type=CDS|length=1992bp|location=Sequence derived from alignment at KK037263.1:23644..24685- (Nannochloropsis gaditana)
ATCGCCGACAGGGAGCTTTCCTCCCTTCTGGTGGAGACGGATGATATTCT
CGCATACCCCCAGCTTCTCTCCGTGGCAGAAGGCGACAGCGTGGAAGATT
TCATCTCGAAATGTAAACGTTTTCTGCTCGAATTTGAGGATGGAGAGGTG
GTGAACATAGAAGGAGGGGAGGATGGTGAAGCCGCCGGGTTAGGCATCGG
TCGTAAAAAATACAAAATCTTAATGCAACGGGCTTGGGCGGGATCAGCAC
TGAAGGAATGGAGGACTTGCCGAAATACGATGAGGAGATGGCAGGAGGCG
TCGCTTTTCCTCCCTTCCCGCCCCTGTCGTCCTGCCTTTGGTTCCAATAT
GGCGCTCACTTTCCTCCTTCCTGTCCAACACCTGTACCAAACGTAATAAA
TAACCAGCAGCTGAGTCAGAACATGGCTGCGGCTCCTCCTTCCAGAGGAA
TGGAGGGTGGAGGTCCACGACAACCAAGTGGTTTGGGCGGGAACGTCGAT
CGCCGACAGGGAGCTTTCCTCCCTTCTGGTGGAGACGGATGATATTCTCG
CATACCCCCAGCTTCTCTCCGTGGCAGAAGGCGACAGCGTGGAAGATTTC
ATCTCGAAATGTAAACGTTTTCTGCTCGAATTTGAGGATGGAGAGGTGGT
GAACATAGAAGGAGGGGAGGATGGTGAAGCCGCCGGGTTAGGCATCGGTC
GTAAAAAATACAAAATCTTAATGCAACGGGCTTGGGCGGGATCAGCACTG
AAGGAATGGAGGACTTGCCGAAATACGATGAGGAGATGGCAGGAGGCGTC
GCTTTTCCTCCCTTCCCGCCCCTGTCGTCCTGCCTTTGGTTCCAATATGG
CGCTCACTTTCCTCCTTCCTGTCCAACACCTGTACCAAACGTAATAAATA
ACCAGCAGCTGAGTCAGAACATGGCTGCGGCTCCTCCTTCCAGAGGAATG
GAGGGTGGAGGTCCACGACAACCAAGTGGTTTGGGCGGGAACGTCGATCG
CCGACAGGGAGCTTTCCTCCCTTCTGGTGGAGACGGATGATATTCTCGCA
TACCCCCAGCTTCTCTCCGTGGCAGAAGGCGACAGCGTGGAAGATTTCAT
CTCGAAATGTAAACGTTTTCTGCTCGAATTTGAGGATGGAGAGGTGGTGA
ACATAGAAGGAGGGGAGGATGGTGAAGCCGCCGGGTTAGGCATCGGTCGT
AAAAAATACAAAATCTTAATGCAACGGGCTTGGGCGGGATCAGCACTGAA
GGAATGGAGGACTTGCCGAAATACGATGAGGAGATGGCAGGAGGCGTCGC
TTTTCCTCCCTTCCCGCCCCTGTCGTCCTGCCTTTGGTTCCAATATGGCG
CTCACTTTCCTCCTTCCTGTCCAACACCTGTACCAAACGTAATAAATAAC
CAGCAGCTGAGTCAGAACATGGCTGCGGCTCCTCCTTCCAGAGGAATGGA
GGGTGGAGGTCCACGACAACCAAGTGGTTTGGGCGGGAACGTCGATCGCC
GACAGGGAGCTTTCCTCCCTTCTGGTGGAGACGGATGATATTCTCGCATA
CCCCCAGCTTCTCTCCGTGGCAGAAGGCGACAGCGTGGAAGATTTCATCT
CGAAATGTAAACGTTTTCTGCTCGAATTTGAGGATGGAGAGGTGGTGAAC
ATAGAAGGAGGGGAGGATGGTGAAGCCGCCGGGTTAGGCATCGGTCGTAA
AAAATACAAAATCTTAATGCAACGGGCTTGGGCGGGATCAGCACTGAAGG
AATGGAGGACTTGCCGAAATACGATGAGGAGATGGCAGGAGGCGTCGCTT
TTCCTCCCTTCCCGCCCCTGTCGTCCTGCCTTTGGTTCCAATATGGCGCT
CACTTTCCTCCTTCCTGTCCAACACCTGTACCAAACGTAATAAATAACCA
GCAGCTGAGTCAGAACATGGCTGCGGCTCCTCCTTCCAGAGGAATGGAGG
GTGGAGGTCCACGACAACCAAGTGGTTTGGGCGGGAACGTCG
back to top
Synonyms
Publications