rna10126, rna10126 (mRNA) Nannochloropsis gaditana

Overview
Namerna10126
Unique Namerna10126
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1305
Alignment locationKK037263.1:6095..6672 +

Link to JBrowse

Properties
Property NameValue
Productgtp-binding protein obg
Orig transcript idgnl|cribi|Naga_102095g1.1025.mrna
Orig protein idgnl|cribi|Naga_102095g1.1025
GenePObg2
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:6095..6672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PObg2gene9829Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10126rna10126-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20578.1cds10095Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10126 ID=rna10126|Name=rna10126|organism=Nannochloropsis gaditana|type=mRNA|length=1305bp
CTACTATTATTTCTTAAGTGCGCATGTTTCGAACCAAATCCGAACGTCAG
TATAATGTGACAGTAATGTAGAATTGGAATAGTGTACCGTTTAGAGTGCT
TCAGGCATTCAAAGTCGGGTTAGTGTATGTCCGTCAATCCCTCCGAAGCA
CCTCCACTATTGGAGAACCACATTTCCTCCCATGCTGGTTTCAGATACAA
GGGTAGCTGAAATAGTCTGTCCCGAATACAGAGTTCTGGAGCCTAGAGGA
TGCCCTCATCAGTATGCATCAGTAAGGAGCAGCACCAGTAAGAAGTTCGG
GGGAATCGCAAATGCTCAAATTCGGAATAGATCTGAGTCATCGAGTCGTT
TGAAAATTTCATTTAAAAGACCTAGCGACCGCTTTTAGATGTACTTTACA
GAGGAAACAACACGATCGCTCTAATATTTTGCATTTCTCAGAGCAAAACA
AGAAGTAGGAGCGATTTGCGCCAGGACTCTCACACTATCAGGATAAACGA
AATCCAAAAGGTCCTATGCCTTTTTGGGGATAATTGTCTTCTGTAAAATC
GGGCACGCACGATTGCAGCATTCGCAGTGGAAACCAATTGTGCATGTAGG
AGGAGGTTAAAATGATAATCATTGCAGCGAACCAGTCCAAATGCGCGTCG
AAATTCAGTACTAGTCAATGCATATCGTACAAATTTATTTCAGCTCCTTT
ACGACGACTTTACTCACGACGGTGGGAAGAGAAATTCGTGGAAGGTCGAA
ATTCAGTCCAAAAAGATTAAGTTTTAAATAGGGGGGTATGTGCGATAGCC
AGTAGGTGACCCCTTCCTGCTCAGGGACTCTGACTTCCCTCCCGTCACTT
CCTAACTGCAAATATCAATGCTGATATTACCCAAAATCATTTCCAAGCAG
AGCTCATGGCAGTGCGCGTTTCTGTGATTGGAAAGCGGTCCCGTGACATG
GCTTTACCTGACAACGGGCGGGCCTACGTCCCGGATGCTACTGTGGCCGT
ACCAGGACAAGTACTCATGGAAGCCGATGTTGATAAGGAGGGGGGACTGT
CCTTCATTCGCGGGCATGGAACGTACCAGGAAGATGCCGCCGAGAGAGGA
AGTTCCGTCGGGGTGGAGTCGAACGCCGGGAAAGTCAGGCTGTGCGCCGG
CGTTGCAGGCGTGATCGAACGAGTGAACAAATTAGTGACCGTGGTCCCTC
CCAACACCCGCTACCAGGGCGCCATAGGGGATCTGGTCGTCGGCCGCGTC
ACGGAAGTGGGAGCGAAGCGCTGGAAAGTGGATTTGAGAGGCCATAAGGT
GAGGA
back to top

protein sequence of rna10126

>rna10126-protein ID=rna10126-protein|Name=rna10126|organism=Nannochloropsis gaditana|type=polypeptide|length=111bp
MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGGRTTGKASPPQR
GARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVP
NLGGWGGRLRR
back to top

mRNA from alignment at KK037263.1:6095..6672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10126 ID=rna10126|Name=rna10126|organism=Nannochloropsis gaditana|type=mRNA|length=578bp|location=Sequence derived from alignment at KK037263.1:6095..6672+ (Nannochloropsis gaditana)
ccccccccggcaccaTGCTCTACCAACATGAGCCCCGCCGTCTCTTCGGA
GAGctcaaggaggacggagagcggTTGGTGGTggcgaaaggaggggaagg
cgggatggGCAACGCGAGcctgaaaggagggaggacgacgggaaaggctt
cccccccccagcggggagcgaggggatgGTTCGATGTGGAGCTGAAACTg
gtgggaatggaggaaggggtagggcgaaggagaagggatggcgggaaagc
cgtggagggaggagagatagGAGGCACGCGTTTCCAGAGACACCTTGATC
aacctctctctctgcctccctcccgccctccctctttcttcccttccttc
cctccctaggTGGCGGACGTGGGCCTGGTGGGCTGTCCCAATGCGGGGAA
AAGCACCCTCTTGGCGGCCGTTTCCAACGCCAGGCCGAAAATTGCCGACT
ATCCGTTTACGACGCTGGTGCCGAATCTaggtgggtggggggggcgtctG
AGGAGGTAGACGATAGCGTTCAGGGAGTTGAGTAGGGGCGATCCAGTTGC
CTTggtcccgcttcctccttggcgccTT
back to top

Coding sequence (CDS) from alignment at KK037263.1:6095..6672+

>rna10126 ID=rna10126|Name=rna10126|organism=Nannochloropsis gaditana|type=CDS|length=672bp|location=Sequence derived from alignment at KK037263.1:6095..6672+ (Nannochloropsis gaditana)
aTGCTCTACCAACATGAGCCCCGCCGTCTCTTCGGAGAGctcaaggagga
cggagagcggTTGGTGGTggcgaaaggaggggaaggcgggatggGCAACG
CGAGcctgaaaggagggaggacgacgggaaaggcttcccccccccagcgg
ggagcgaggggatgGTTCGATGTGGAGCTGAAACTggTGGCGGACGTGGG
CCTGGTGGGCTGTCCCAATGCGGGGAAAAGCACCCTCTTGGCGGCCGTTT
CCAACGCCAGGCCGAAAATTGCCGACTATCCGTTTACGACGCTGGTGCCG
AATCTaggtgggtggggggggcgtctGAGGAGGTAGaTGCTCTACCAACA
TGAGCCCCGCCGTCTCTTCGGAGAGctcaaggaggacggagagcggTTGG
TGGTggcgaaaggaggggaaggcgggatggGCAACGCGAGcctgaaagga
gggaggacgacgggaaaggcttcccccccccagcggggagcgaggggatg
GTTCGATGTGGAGCTGAAACTggTGGCGGACGTGGGCCTGGTGGGCTGTC
CCAATGCGGGGAAAAGCACCCTCTTGGCGGCCGTTTCCAACGCCAGGCCG
AAAATTGCCGACTATCCGTTTACGACGCTGGTGCCGAATCTaggtgggtg
gggggggcgtctGAGGAGGTAG
back to top
Synonyms
Publications