EWM20578.1, cds10095 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|585100307|gb|EWM20578.1| (gtp-binding protein obg [Nannochloropsis gaditana]) HSP 1 Score: 223.016 bits (567), Expect = 8.204e-74 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 Query: 1 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGGRTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLGGWGGRLRR 111 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGGRTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLGGWGGRLRR Sbjct: 1 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGGRTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLGGWGGRLRR 111
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|938260690|gb|KPP95964.1| (GTP-binding protein Obg [Bacteroidetes bacterium HLUCCA01]) HSP 1 Score: 125.176 bits (313), Expect = 1.240e-32 Identity = 64/103 (62.14%), Postives = 78/103 (75.73%), Query Frame = 0 Query: 3 YQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKG--GRTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG 103 Y+ E RRL GE+ EDG++LV+AKGG+GG GN+ K +T A P G ++ELKL+A+VGLVG PNAGKSTLLAA+SNARPKIADYPFTT+ PNLG Sbjct: 97 YEFETRRLLGEVTEDGQQLVIAKGGQGGKGNSYFKSDVNQTPRYAQPGVPGEEIIVEIELKLIAEVGLVGYPNAGKSTLLAALSNARPKIADYPFTTMEPNLG 199
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|298708794|emb|CBJ30754.1| (PObg2, plastid Obg/CgtA-like GTPase 2 [Ectocarpus siliculosus]) HSP 1 Score: 127.487 bits (319), Expect = 3.366e-32 Identity = 68/95 (71.58%), Postives = 76/95 (80.00%), Query Frame = 0 Query: 10 LFGELKEDGERLVVAKGGEGGMGNASLKGGRTTG-KASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG 103 + GEL+E GERLVVAKGG GG GNA+ K R KASPP G R W +EL+LVADVGLVG P+AGKSTLLAA +NA+PKIADYPFTTLVPNLG Sbjct: 218 VLGELREGGERLVVAKGGFGGRGNAATKITRGQAPKASPPGAGERRWLSLELRLVADVGLVGVPSAGKSTLLAASTNAKPKIADYPFTTLVPNLG 312
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|1119305747|ref|WP_072283760.1| (GTPase ObgE [Pelobacter sp. SFB93] >gi|1109395207|gb|APG27795.1| GTPase ObgE [Pelobacter sp. SFB93]) HSP 1 Score: 122.865 bits (307), Expect = 1.340e-31 Identity = 65/111 (58.56%), Postives = 78/111 (70.27%), Query Frame = 0 Query: 1 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGG--RTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG--GWGG 107 ++Y HE L +LKE G+R V AKGG+GG GNA K R P G W +ELKL+ADVGLVG PNAGKSTL++A+S+A+PKIADYPFTTLVPNLG G+GG Sbjct: 95 LIYNHETGELLADLKERGQRFVAAKGGQGGRGNARFKTSTNRAPRHVQPGLPGEEIWLRLELKLLADVGLVGMPNAGKSTLISAISSAKPKIADYPFTTLVPNLGVVGYGG 205
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|1072849399|gb|OEU52324.1| (GTPase ObgE [Desulfuromonadales bacterium C00003096]) HSP 1 Score: 118.242 bits (295), Expect = 7.401e-30 Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 0 Query: 1 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGG--RTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG--GWGG 107 ++Y E + +LKE G+R V AKGG+GG GNA K R P G W +ELKL+ADVGLVG PNAGKSTL++A+S ARPKIADYPFTTLVPNLG G+GG Sbjct: 95 LVYDQESGEVLADLKERGQRFVAAKGGQGGRGNARFKTSTNRAPRHVQPGLPGDEIWLRLELKLLADVGLVGMPNAGKSTLISAISAARPKIADYPFTTLVPNLGVVGYGG 205
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|1072873993|gb|OEU72862.1| (GTPase ObgE, partial [Desulfuromonadales bacterium C00003107]) HSP 1 Score: 116.701 bits (291), Expect = 1.117e-29 Identity = 62/111 (55.86%), Postives = 75/111 (67.57%), Query Frame = 0 Query: 1 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGG--RTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG--GWGG 107 ++Y E + +LK+ G+R V KGG+GG GNA K R P G W +ELKL+ADVGLVG PNAGKSTL++A+S ARPKIADYPFTTLVPNLG G+GG Sbjct: 43 LVYDQESGEVLADLKDRGQRFVAVKGGQGGRGNARFKTSTNRAPRHVQPGMPGDEIWLRLELKLLADVGLVGMPNAGKSTLISAISAARPKIADYPFTTLVPNLGVVGYGG 153
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|1085497806|gb|OGW58850.1| (hypothetical protein A3D21_02315 [Nitrospirae bacterium RIFCSPHIGHO2_02_FULL_42_12]) HSP 1 Score: 115.161 bits (287), Expect = 2.084e-29 Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 0 Query: 1 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGG--RTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG 103 ++Y E L +L ++G+R+VVA+GG GG+GNA+ R A P ++G R W +ELKL+ADVG++G PNAGKST ++ VS ARPKIADYPFTT+ PNLG Sbjct: 18 IVYDFESNTLLADLIQEGDRVVVARGGRGGLGNAAFATSVNRAPKFAQPGEKGERRWVLLELKLLADVGIIGLPNAGKSTFISCVSAARPKIADYPFTTISPNLG 122
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|1085499247|gb|OGW60187.1| (Obg family GTPase CgtA [Nitrospirae bacterium RIFCSPLOW2_12_42_9]) HSP 1 Score: 113.62 bits (283), Expect = 2.427e-29 Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = 0 Query: 1 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGG--RTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG 103 ++Y E L +L ++G+R+VVA+GG GG+GNA+ R A P ++G R W +ELKL+ADVG++G PNAGKST ++ VS ARPKIADYPFTT PNLG Sbjct: 94 IVYDFESNTLLADLIQEGDRVVVARGGRGGLGNAAFATSVNRAPKFAQPGEKGERRWVLLELKLLADVGIIGLPNAGKSTFISCVSAARPKIADYPFTTTSPNLG 198
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|1082497359|gb|OFY41735.1| (GTPase ObgE [Bacteroidetes bacterium GWF2_40_14]) HSP 1 Score: 115.161 bits (287), Expect = 8.906e-29 Identity = 57/93 (61.29%), Postives = 70/93 (75.27%), Query Frame = 0 Query: 13 ELKEDGERLVVAKGGEGGMGNASLKGG--RTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG 103 E+ E+GE ++AKGG GG+GNA+ K RT A P + G WF +ELK++ADVGLVG PNAGKSTLL+ +S A+PKIADYPFTTL PNLG Sbjct: 110 EITENGEEKIIAKGGRGGLGNANFKSATNRTPRYAQPGEPGIENWFILELKILADVGLVGFPNAGKSTLLSTISAAKPKIADYPFTTLEPNLG 202
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|1200266915|gb|OUT89768.1| (GTPase ObgE [Rhizobiales bacterium TMED29]) HSP 1 Score: 114.39 bits (285), Expect = 2.536e-28 Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 0 Query: 2 LYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKG--GRTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLGGWGGR 108 ++ + L +L E G+R+V+A+GG GG GNA KG R A+P G W + LKL+AD+GL+G PNAGKSTLLA+VS ARPKIADYPFTTL PNLG G R Sbjct: 96 IFAEDNETLLADLTEIGQRIVLARGGNGGFGNARFKGPVNRAPRHANPGLEGRDAWLWLRLKLIADIGLLGLPNAGKSTLLASVSRARPKIADYPFTTLHPNLGVVGAR 204 The following BLAST results are available for this feature:
BLAST of EWM20578.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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