EWM20578.1, cds10095 (CDS) Nannochloropsis gaditana

Overview
NameEWM20578.1
Unique Namecds10095
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037263.1:6109..6294 +
Alignment locationKK037263.1:6454..6603 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20578.1
Productgtp-binding protein obg
Orig transcript idgnl|cribi|Naga_102095g1.1025.mrna
GenePObg2
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:6109..6294 +
KK037263.1supercontigKK037263.1:6454..6603 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0000287magnesium ion binding
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR031167G_OBG
IPR014100GTP-bd_Obg/CgtA
IPR006169GTP1_OBG_dom
IPR027417P-loop_NTPase
IPR006073GTP_binding_domain
Homology
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|585100307|gb|EWM20578.1| (gtp-binding protein obg [Nannochloropsis gaditana])

HSP 1 Score: 223.016 bits (567), Expect = 8.204e-74
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
Query:    1 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGGRTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLGGWGGRLRR 111
            MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGGRTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLGGWGGRLRR
Sbjct:    1 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGGRTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLGGWGGRLRR 111          
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|938260690|gb|KPP95964.1| (GTP-binding protein Obg [Bacteroidetes bacterium HLUCCA01])

HSP 1 Score: 125.176 bits (313), Expect = 1.240e-32
Identity = 64/103 (62.14%), Postives = 78/103 (75.73%), Query Frame = 0
Query:    3 YQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKG--GRTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG 103
            Y+ E RRL GE+ EDG++LV+AKGG+GG GN+  K    +T   A P   G     ++ELKL+A+VGLVG PNAGKSTLLAA+SNARPKIADYPFTT+ PNLG
Sbjct:   97 YEFETRRLLGEVTEDGQQLVIAKGGQGGKGNSYFKSDVNQTPRYAQPGVPGEEIIVEIELKLIAEVGLVGYPNAGKSTLLAALSNARPKIADYPFTTMEPNLG 199          
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|298708794|emb|CBJ30754.1| (PObg2, plastid Obg/CgtA-like GTPase 2 [Ectocarpus siliculosus])

HSP 1 Score: 127.487 bits (319), Expect = 3.366e-32
Identity = 68/95 (71.58%), Postives = 76/95 (80.00%), Query Frame = 0
Query:   10 LFGELKEDGERLVVAKGGEGGMGNASLKGGRTTG-KASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG 103
            + GEL+E GERLVVAKGG GG GNA+ K  R    KASPP  G R W  +EL+LVADVGLVG P+AGKSTLLAA +NA+PKIADYPFTTLVPNLG
Sbjct:  218 VLGELREGGERLVVAKGGFGGRGNAATKITRGQAPKASPPGAGERRWLSLELRLVADVGLVGVPSAGKSTLLAASTNAKPKIADYPFTTLVPNLG 312          
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|1119305747|ref|WP_072283760.1| (GTPase ObgE [Pelobacter sp. SFB93] >gi|1109395207|gb|APG27795.1| GTPase ObgE [Pelobacter sp. SFB93])

HSP 1 Score: 122.865 bits (307), Expect = 1.340e-31
Identity = 65/111 (58.56%), Postives = 78/111 (70.27%), Query Frame = 0
Query:    1 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGG--RTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG--GWGG 107
            ++Y HE   L  +LKE G+R V AKGG+GG GNA  K    R      P   G   W  +ELKL+ADVGLVG PNAGKSTL++A+S+A+PKIADYPFTTLVPNLG  G+GG
Sbjct:   95 LIYNHETGELLADLKERGQRFVAAKGGQGGRGNARFKTSTNRAPRHVQPGLPGEEIWLRLELKLLADVGLVGMPNAGKSTLISAISSAKPKIADYPFTTLVPNLGVVGYGG 205          
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|1072849399|gb|OEU52324.1| (GTPase ObgE [Desulfuromonadales bacterium C00003096])

HSP 1 Score: 118.242 bits (295), Expect = 7.401e-30
Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 0
Query:    1 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGG--RTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG--GWGG 107
            ++Y  E   +  +LKE G+R V AKGG+GG GNA  K    R      P   G   W  +ELKL+ADVGLVG PNAGKSTL++A+S ARPKIADYPFTTLVPNLG  G+GG
Sbjct:   95 LVYDQESGEVLADLKERGQRFVAAKGGQGGRGNARFKTSTNRAPRHVQPGLPGDEIWLRLELKLLADVGLVGMPNAGKSTLISAISAARPKIADYPFTTLVPNLGVVGYGG 205          
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|1072873993|gb|OEU72862.1| (GTPase ObgE, partial [Desulfuromonadales bacterium C00003107])

HSP 1 Score: 116.701 bits (291), Expect = 1.117e-29
Identity = 62/111 (55.86%), Postives = 75/111 (67.57%), Query Frame = 0
Query:    1 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGG--RTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG--GWGG 107
            ++Y  E   +  +LK+ G+R V  KGG+GG GNA  K    R      P   G   W  +ELKL+ADVGLVG PNAGKSTL++A+S ARPKIADYPFTTLVPNLG  G+GG
Sbjct:   43 LVYDQESGEVLADLKDRGQRFVAVKGGQGGRGNARFKTSTNRAPRHVQPGMPGDEIWLRLELKLLADVGLVGMPNAGKSTLISAISAARPKIADYPFTTLVPNLGVVGYGG 153          
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|1085497806|gb|OGW58850.1| (hypothetical protein A3D21_02315 [Nitrospirae bacterium RIFCSPHIGHO2_02_FULL_42_12])

HSP 1 Score: 115.161 bits (287), Expect = 2.084e-29
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 0
Query:    1 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGG--RTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG 103
            ++Y  E   L  +L ++G+R+VVA+GG GG+GNA+      R    A P ++G R W  +ELKL+ADVG++G PNAGKST ++ VS ARPKIADYPFTT+ PNLG
Sbjct:   18 IVYDFESNTLLADLIQEGDRVVVARGGRGGLGNAAFATSVNRAPKFAQPGEKGERRWVLLELKLLADVGIIGLPNAGKSTFISCVSAARPKIADYPFTTISPNLG 122          
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|1085499247|gb|OGW60187.1| (Obg family GTPase CgtA [Nitrospirae bacterium RIFCSPLOW2_12_42_9])

HSP 1 Score: 113.62 bits (283), Expect = 2.427e-29
Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = 0
Query:    1 MLYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKGG--RTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG 103
            ++Y  E   L  +L ++G+R+VVA+GG GG+GNA+      R    A P ++G R W  +ELKL+ADVG++G PNAGKST ++ VS ARPKIADYPFTT  PNLG
Sbjct:   94 IVYDFESNTLLADLIQEGDRVVVARGGRGGLGNAAFATSVNRAPKFAQPGEKGERRWVLLELKLLADVGIIGLPNAGKSTFISCVSAARPKIADYPFTTTSPNLG 198          
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|1082497359|gb|OFY41735.1| (GTPase ObgE [Bacteroidetes bacterium GWF2_40_14])

HSP 1 Score: 115.161 bits (287), Expect = 8.906e-29
Identity = 57/93 (61.29%), Postives = 70/93 (75.27%), Query Frame = 0
Query:   13 ELKEDGERLVVAKGGEGGMGNASLKGG--RTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLG 103
            E+ E+GE  ++AKGG GG+GNA+ K    RT   A P + G   WF +ELK++ADVGLVG PNAGKSTLL+ +S A+PKIADYPFTTL PNLG
Sbjct:  110 EITENGEEKIIAKGGRGGLGNANFKSATNRTPRYAQPGEPGIENWFILELKILADVGLVGFPNAGKSTLLSTISAAKPKIADYPFTTLEPNLG 202          
BLAST of EWM20578.1 vs. NCBI_GenBank
Match: gi|1200266915|gb|OUT89768.1| (GTPase ObgE [Rhizobiales bacterium TMED29])

HSP 1 Score: 114.39 bits (285), Expect = 2.536e-28
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 0
Query:    2 LYQHEPRRLFGELKEDGERLVVAKGGEGGMGNASLKG--GRTTGKASPPQRGARGWFDVELKLVADVGLVGCPNAGKSTLLAAVSNARPKIADYPFTTLVPNLGGWGGR 108
            ++  +   L  +L E G+R+V+A+GG GG GNA  KG   R    A+P   G   W  + LKL+AD+GL+G PNAGKSTLLA+VS ARPKIADYPFTTL PNLG  G R
Sbjct:   96 IFAEDNETLLADLTEIGQRIVLARGGNGGFGNARFKGPVNRAPRHANPGLEGRDAWLWLRLKLIADIGLLGLPNAGKSTLLASVSRARPKIADYPFTTLHPNLGVVGAR 204          
The following BLAST results are available for this feature:
BLAST of EWM20578.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100307|gb|EWM20578.1|8.204e-74100.00gtp-binding protein obg [Nannochloropsis gaditana][more]
gi|938260690|gb|KPP95964.1|1.240e-3262.14GTP-binding protein Obg [Bacteroidetes bacterium H... [more]
gi|298708794|emb|CBJ30754.1|3.366e-3271.58PObg2, plastid Obg/CgtA-like GTPase 2 [Ectocarpus ... [more]
gi|1119305747|ref|WP_072283760.1|1.340e-3158.56GTPase ObgE [Pelobacter sp. SFB93] >gi|1109395207|... [more]
gi|1072849399|gb|OEU52324.1|7.401e-3057.66GTPase ObgE [Desulfuromonadales bacterium C0000309... [more]
gi|1072873993|gb|OEU72862.1|1.117e-2955.86GTPase ObgE, partial [Desulfuromonadales bacterium... [more]
gi|1085497806|gb|OGW58850.1|2.084e-2953.33hypothetical protein A3D21_02315 [Nitrospirae bact... [more]
gi|1085499247|gb|OGW60187.1|2.427e-2953.33Obg family GTPase CgtA [Nitrospirae bacterium RIFC... [more]
gi|1082497359|gb|OFY41735.1|8.906e-2961.29GTPase ObgE [Bacteroidetes bacterium GWF2_40_14][more]
gi|1200266915|gb|OUT89768.1|2.536e-2855.05GTPase ObgE [Rhizobiales bacterium TMED29][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10126rna10126Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications