rna10122, rna10122 (mRNA) Nannochloropsis gaditana

Overview
Namerna10122
Unique Namerna10122
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1013
Alignment locationKK037262.1:96578..97363 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101460g1.10515.mrna
Orig protein idgnl|cribi|Naga_101460g1.10515
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:96578..97363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101460g1gene9825Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20582.1cds10091Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10122rna10122-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10122 ID=rna10122|Name=rna10122|organism=Nannochloropsis gaditana|type=mRNA|length=1013bp
ATGTTGGAGGCGCGGCGGCAGGCAGAGCTGCAGGGGGCGGGGCAAGAGGA
GTCGGCAGACCGGGGTCTGTCGCCGCGCAGCAAGGCGAATCTTCGAAGAT
TCGCCTTCCGTGCGGACAGCTTCCGGGGGGCCGGGGCGGAGGCGGGGGAG
GAAGGCAGCGAGGAGGAAGGCAGGGGAGAGGAGGGCAGGGGGGAGGGGGA
GAAGGCACAAGGAGGGAGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGATGGGTCAGGGTCGTGGGGGGAGGGAAGCGGGCGCGTCGGGAGGGAA
TCGGCTTTGGAGGGCGCGGGGGAGGAGAAAGGGGGGATGGAGGGCGGGGA
GGAGGGCGGGGAGGAGTGTCTGAAGCGCGCGCGTGTGGACCGGCATTGCT
CCATCTGTCTGGGCGACTACGAGGAGGGAGAGACCCTCTGCCTGCTGCCC
TGTCGGCACACCTACCACGACGACTGCCTGAACGTGTGGATCTCCGCCCA
CGCCAAGTGCCCGCTCTGTAACTACGACTTGCTCCTGGCGCAGGCTACGG
CCGCCTCGATGGCTTCCCACGCCGCCTCGCCTCTGCCAGGGGGGGACCTT
GTGGGGGGCGGGGGGGCGGGCGACGAGGAGGAAGCGCAGCTGGAGGAGGA
GGCGTTGGCGCGGGAGAACATGATGATGCCCTGGCCTTGGCGTCAGGGGG
AGCGGAGGTGGGGAGGCGGGCGGGGTCGGGAGGGAGGAAGGTGGGGGCGG
GGGGAGCCGAGGGGGGGCGAGGGCAACGTGGTGAGGATCGTAAGGATGGA
GGCCTGAGGCTTTGGACGACAGGAATATGGGCCGGCTTGTCACAAGAATA
GGTCGACGAGGGGGAGTGCCCGGACTTAGGGGCTGTATGTGGACGGGAGG
GAGGAGGTCTGCCACCGAGGAGGGACGCCAGGGAAGATGAAAACGTCTGG
CTCGGGGATGGCTTTATTTATTTGTTTAAAGTGCGTCAAAATTAATCTGT
GCATGCCAAACAT
back to top

protein sequence of rna10122

>rna10122-protein ID=rna10122-protein|Name=rna10122|organism=Nannochloropsis gaditana|type=polypeptide|length=144bp
SSSPPSLPPSLPTPPPGDPWRTNRQREGGRASREPPPPLPSHASSPALPP
SLPRPRPPPLPQLQQAARLLQGAFQLQLFGFDVIVPTYGEGEREGDEGGR
EGGWEAELVVVDVNFFPSFKEVEDFPARLRAFLRERAGGRRGGT
back to top

mRNA from alignment at KK037262.1:96578..97363-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10122 ID=rna10122|Name=rna10122|organism=Nannochloropsis gaditana|type=mRNA|length=786bp|location=Sequence derived from alignment at KK037262.1:96578..97363- (Nannochloropsis gaditana)
TCCTCCTCCCCGCCCTCCCTCCCGCCCTCCCTCCCCACTCCTCCTCCTGG
AGACCCTTGGCGGACGAATCGCCAGAGGGAGGGAGGGAGGGCGAGCAGGG
AGCCCCCCCCACCACTCCCTTCCCATGCGTCCTCTCCCGCCCTTCCTCCC
TCCCTCCCTCGGCCCCGCCCTCCCCCCCTCCCTCAGCTCCAGCAGGCCGC
CCGCCTCCTTCAAGGAGCCTTCCAGCTCCAGCTCTTCGGCTTCGACGTGA
TCGTCCCGACTTACGGGGAGGGAGAGAGGGAGGGAGATGAGGGAGGGAGG
GAGGGAGGGTGGGAGGCGGAGTTGGTAGTGGTGGATGTGAACTTCTTCCC
CTCGTTCAAGGAGGTGGAGGACTTCCCCGCGCGTCTGCGAGCGTTCCTGA
GAGAGAGGGCAGGAGGGAGGAGGGGGGGGACATAAGGAGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGAATCGAAGGAGCGACACTTCCCGCAG
AGACCAGGGGTCAGAGAAGCTGAAAGAGGAGAGAGAGAAGGCTCTGAATA
AATGTGATGCATTCGGTGTGTGTGAGGAATATGCGTTTGGTGAAAAGGCG
GTGTGTAAAAGTGATGCATTTGGAGTGTGTGAGGAGGAGGAAAGGACGTC
GGGGGGGGTAGGACGTTCCCTCTCCCCAGTGTTAGGAACAGAGCGCATAC
CGACAAGCCGAGGCCGAGAACGATACGGAGGAACACATTGAACATAAAGC
TTTGGAAGCCGTGCCGTTGCGACGTGTCTAATTTCT
back to top

Coding sequence (CDS) from alignment at KK037262.1:96578..97363-

>rna10122 ID=rna10122|Name=rna10122|organism=Nannochloropsis gaditana|type=CDS|length=435bp|location=Sequence derived from alignment at KK037262.1:96578..97363- (Nannochloropsis gaditana)
TCCTCCTCCCCGCCCTCCCTCCCGCCCTCCCTCCCCACTCCTCCTCCTGG
AGACCCTTGGCGGACGAATCGCCAGAGGGAGGGAGGGAGGGCGAGCAGGG
AGCCCCCCCCACCACTCCCTTCCCATGCGTCCTCTCCCGCCCTTCCTCCC
TCCCTCCCTCGGCCCCGCCCTCCCCCCCTCCCTCAGCTCCAGCAGGCCGC
CCGCCTCCTTCAAGGAGCCTTCCAGCTCCAGCTCTTCGGCTTCGACGTGA
TCGTCCCGACTTACGGGGAGGGAGAGAGGGAGGGAGATGAGGGAGGGAGG
GAGGGAGGGTGGGAGGCGGAGTTGGTAGTGGTGGATGTGAACTTCTTCCC
CTCGTTCAAGGAGGTGGAGGACTTCCCCGCGCGTCTGCGAGCGTTCCTGA
GAGAGAGGGCAGGAGGGAGGAGGGGGGGGACATAA
back to top
Synonyms
Publications