rna10121, rna10121 (mRNA) Nannochloropsis gaditana

Overview
Namerna10121
Unique Namerna10121
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length521
Alignment locationKK037262.1:90891..91903 +

Link to JBrowse

Properties
Property NameValue
ProductZinc finger, RING-type
Orig transcript idgnl|cribi|Naga_101076g3.7471.mrna
Orig protein idgnl|cribi|Naga_101076g3.7471
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:90891..91903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101076g3gene9824Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10121rna10121-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20583.1cds10090Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10121 ID=rna10121|Name=rna10121|organism=Nannochloropsis gaditana|type=mRNA|length=521bp
GAGGGGAAGAAGAACAAGAAGTGTGCGTAAAATACACGTCACAAATTTGT
AACATACATACAATAGCAACGCTTCAACTCTCTTTCAAGAGCCATGTGGC
TCGTCGCCGCGTGCGCATCTCGTGAAGGGCGGACACGATGGAGGCTTTTT
CCTGTTGGGTGGGGAGTACCACATAGCACAGCCGGGCCCTTGAGGAACAG
CATGGAGCAACTTGCTGCACCCCCCCACAAAAACAGCACAAGCCTTGCCG
TGACATTAGTGTGTACCACCTCAATCTCACTGAGAGACTGGCACGCGATG
GCAATGCATTCACACCACACGTGGTCAAAGAGCGTCTACGGCCAGGACGG
ATGCGGTTTCTCGAGGCGAGGCAGGAGGCTTTCCTCCGTGACCCCGGACC
GTCAACTTCCTTGAGGCGCCCCGTCACGCCCACCCTGAAAACTTTGGTCA
CAATGTGGACTGTGGACTTCCATGTGGACAGTAAGCTGAACGGGAACAAA
GAAGAAAGGAACGGGCATGGA
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protein sequence of rna10121

>rna10121-protein ID=rna10121-protein|Name=rna10121|organism=Nannochloropsis gaditana|type=polypeptide|length=268bp
MLEARRQAELQGAGQEESADRGLSPRSKANLRRFAFRADSFRGAGAEAGE
EGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGSGSWGEGSGRVGRE
SALEGAGEEKGGMEGGEEGGEECLKRARVDRHCSICLGDYEEGETLCLLP
CRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDL
VGGGGAGDEEEAQLEEEALARENMMMPWPWRQGERRWGGGRGREGGRWGR
GEPRGGEGNVVRIVRMEA
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mRNA from alignment at KK037262.1:90891..91903+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10121 ID=rna10121|Name=rna10121|organism=Nannochloropsis gaditana|type=mRNA|length=1013bp|location=Sequence derived from alignment at KK037262.1:90891..91903+ (Nannochloropsis gaditana)
ATGTTGGAGGCGCGGCGGCAGGCAGAGctgcagggggcggggcaagaGGA
GTCGGCAGACCGGGGTCTGTCGCCGCGCAGCAAGGCGAATCTTCGAAGAT
TCGCCTTCCGTGCGGACAGCTTccggggggccggggcggaggcgggggag
gaaggcagcgaggaggaaggcaggggagaggagggcaggggggaggggga
gaaggcacaaggagggaggaggagggagggagggagggagggagggaggg
aggatgggtcAGGgtcgtggggggagggaagcgggcgCGTCGGGAGGGAA
TCGGCTttggagggcgcgggggaggagaaaggggggatggagggcgggga
ggagggcggggaggagtgTCTGAAGCGCGCGCGTGTGGACCGGCATTGCT
CCATCTGTCTGGGCGActacgaggagggagagacccTCTGCCTGCTGCCC
TGTCGGCACACCTACCACGACGACTGCCTGAACGTGTGGATCTCCGCCCA
CGCCAAGTGCCCGCTCTGTAACTACGACTTGCTCCTGGCGCAGGCTACGG
CCGCCTCGATGGCTTCCCACGCCGCCTCGCCTCTGCCAGGGGGGGACCTt
gtggggggcgggggggcgggcgacgaggaggaagcgcagctggaggagga
ggcgttggCGCGGGAGAACATGATGATGCCCTGGCCTTGGCGTCAGGGGG
agcggaggtggggaggcgggcggggtcgggagggaggaaggtgggggcgg
ggggagccgagggggggcgagggcaaCGTGGTGAGGATCGTAAGGATGGA
GGCCTGAGGCTTTGGACGACAGGAATATGGGCCGGCTTGTCACAAGAATA
GGTCGACGAGGGGGAGTGCCCGGACTTAGGGGCTGTAtgtggacgggagg
gaggaggtctgcCACCGAGGAGGGACGCCAGGGAAGATGAAAACGTCTGG
CTCGGGGATGGCTTTATTTATTTGTTTAAAGTGCGTCAAAATTAATCTGT
GCATGCCAAACAT
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Coding sequence (CDS) from alignment at KK037262.1:90891..91903+

>rna10121 ID=rna10121|Name=rna10121|organism=Nannochloropsis gaditana|type=CDS|length=807bp|location=Sequence derived from alignment at KK037262.1:90891..91903+ (Nannochloropsis gaditana)
ATGTTGGAGGCGCGGCGGCAGGCAGAGctgcagggggcggggcaagaGGA
GTCGGCAGACCGGGGTCTGTCGCCGCGCAGCAAGGCGAATCTTCGAAGAT
TCGCCTTCCGTGCGGACAGCTTccggggggccggggcggaggcgggggag
gaaggcagcgaggaggaaggcaggggagaggagggcaggggggaggggga
gaaggcacaaggagggaggaggagggagggagggagggagggagggaggg
aggatgggtcAGGgtcgtggggggagggaagcgggcgCGTCGGGAGGGAA
TCGGCTttggagggcgcgggggaggagaaaggggggatggagggcgggga
ggagggcggggaggagtgTCTGAAGCGCGCGCGTGTGGACCGGCATTGCT
CCATCTGTCTGGGCGActacgaggagggagagacccTCTGCCTGCTGCCC
TGTCGGCACACCTACCACGACGACTGCCTGAACGTGTGGATCTCCGCCCA
CGCCAAGTGCCCGCTCTGTAACTACGACTTGCTCCTGGCGCAGGCTACGG
CCGCCTCGATGGCTTCCCACGCCGCCTCGCCTCTGCCAGGGGGGGACCTt
gtggggggcgggggggcgggcgacgaggaggaagcgcagctggaggagga
ggcgttggCGCGGGAGAACATGATGATGCCCTGGCCTTGGCGTCAGGGGG
agcggaggtggggaggcgggcggggtcgggagggaggaaggtgggggcgg
ggggagccgagggggggcgagggcaaCGTGGTGAGGATCGTAAGGATGGA
GGCCTGA
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Synonyms
Publications