EWM20583.1, cds10090 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|585100318|gb|EWM20583.1| (Zinc finger, RING-type [Nannochloropsis gaditana]) HSP 1 Score: 511.916 bits (1317), Expect = 0.000e+0 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query: 1 MLEARRQAELQGAGQEESADRGLSPRSKANLRRFAFRADSFRGAGAEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGSGSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDRHCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWRQGERRWGGGRGREGGRWGRGEPRGGEGNVVRIVRMEA 268
MLEARRQAELQGAGQEESADRGLSPRSKANLRRFAFRADSFRGAGAEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGSGSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDRHCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWRQGERRWGGGRGREGGRWGRGEPRGGEGNVVRIVRMEA
Sbjct: 1 MLEARRQAELQGAGQEESADRGLSPRSKANLRRFAFRADSFRGAGAEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGSGSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDRHCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWRQGERRWGGGRGREGGRWGRGEPRGGEGNVVRIVRMEA 268
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|672190267|ref|XP_008775202.1| (PREDICTED: E3 ubiquitin-protein ligase ATL31 [Phoenix dactylifera]) HSP 1 Score: 73.1738 bits (178), Expect = 3.164e-11 Identity = 48/149 (32.21%), Postives = 68/149 (45.64%), Query Frame = 0
Query: 77 GGREGGRED--GSGSWG-EGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDRHCSICLGDYEEGETLCLLP-CRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGD--LVGGGGAGDEEEAQLEEEAL 219
G E GR G WG EG E+ E G+ G+E E C++CL ++E+ ETL LLP C H +H DC++ W++ HA CP+C +L+ + AS+ P P VGGG D A+ E +
Sbjct: 82 NGTESGRVSVRGGAGWGQEGLDPAVLETFPTLVYSEVKGLRIGKEAPE-----------CAVCLSEFEDDETLRLLPKCSHVFHTDCIDTWLATHATCPVCRSNLVPDPDAPQTPASNLQPPAPAAVEGTVGGGERADAAPAEQVEITV 219
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|299473238|emb|CBN77638.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 72.7886 bits (177), Expect = 5.813e-11 Identity = 48/120 (40.00%), Postives = 55/120 (45.83%), Query Frame = 0
Query: 62 GRGEGEKAQGGRRREGGREGGREDGSGSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRA-RVDRHCSICLGDYEEGETLCLLPCRHTYHDDCLNVWI--SAHAKCPLCNYDLL 178
GR EGE A G GG E G G G G E GEE E E G L C IC G+Y EG+ LC LPCRHTYH +C++ W+ H+ CPLC LL
Sbjct: 386 GRDEGESAIRGSCCGGGVADSDESGEGGSGSKPSVAGPEKRPPPEGEEFDDKEVPERGMTGGLSELWSSGESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLL 505
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|1117458007|ref|XP_019424034.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Lupinus angustifolius] >gi|1117458009|ref|XP_019424035.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like [Lupinus angustifolius] >gi|1117458011|ref|XP_019424036.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like [Lupinus angustifolius] >gi|1102693973|gb|OIV93502.1| hypothetical protein TanjilG_11084 [Lupinus angustifolius]) HSP 1 Score: 71.633 bits (174), Expect = 8.745e-11 Identity = 41/132 (31.06%), Postives = 58/132 (43.94%), Query Frame = 0
Query: 133 CSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGG----GAGDEEEAQLEEEALARENMMMPWPWRQGE-RRWGGGRGREGGRWGRGEPRGGEGN 259
C++C +E E LPC+H YH DC+ W+ H CP+C Y+L A A + G + AGD ++QL+ R N+ +PWP+RQ G G + G P G GN
Sbjct: 188 CAVCKDTFELNEIAKQLPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYEQRAQGGAGAVEGAVQINQNQDQSAAGDSSQSQLQSPREHRFNVALPWPFRQFYGDTSNVGTGNDNNTGGESNP-GSRGN 318
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|923537386|ref|XP_013719737.1| (PREDICTED: RING-H2 finger protein ATL7-like [Brassica napus] >gi|923658898|ref|XP_013646949.1| PREDICTED: RING-H2 finger protein ATL7-like [Brassica napus] >gi|1079381306|ref|XP_009128720.2| PREDICTED: RING-H2 finger protein ATL7 [Brassica rapa] >gi|674891624|emb|CDY41122.1| BnaA02g23440D [Brassica napus]) HSP 1 Score: 68.5514 bits (166), Expect = 2.882e-10 Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 0
Query: 130 DRHCSICLGDYEEGETLCLLP-CRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMAS-HAASPLPGGDLVGGGGAGDEEEAQLEEEALAR 221
D CS+CLGDY+ E L +P C HT+H DC+++W++ H CPLC L+ + S + S + D GGGA + E+QL E ++
Sbjct: 108 DSQCSVCLGDYQANEKLQQIPPCGHTFHMDCIDLWLTLHTTCPLCRLSLIPKSSLDRSQQNLETVSSISNSD---GGGASAQPESQLVGEIVSH 198
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|721655475|ref|XP_010234201.1| (PREDICTED: RING-H2 finger protein ATL1-like [Brachypodium distachyon] >gi|944059095|gb|KQJ94685.1| hypothetical protein BRADI_3g12560 [Brachypodium distachyon]) HSP 1 Score: 68.5514 bits (166), Expect = 6.937e-10 Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 0
Query: 125 KRARVDRHCSICLGDYEEGETLCLLP-CRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGD 199
K+A V C++CLG++ EGE L LP C H +H DC++ W+ A A CPLC D ++A+ +AS A+ PGGD
Sbjct: 100 KKAAVASECAVCLGEFSEGERLRRLPACLHAFHIDCIDAWLHATANCPLCRAD-VVAEHRVIDIASPASPSPPGGD 174
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|727633764|ref|XP_010487953.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa]) HSP 1 Score: 67.3958 bits (163), Expect = 2.330e-9 Identity = 47/215 (21.86%), Postives = 82/215 (38.14%), Query Frame = 0
Query: 36 FRADSFRGAG----------AEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGS-GSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDR--------HCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWR 231
F + SF G ++A + S + + R G Q R G+ G + G G L + G + + L +V + C++C+ ++E+G + +PC+H +H DCL W+ H CP+C Y+L + A G G+GD + + ++ R N+ +PWP+R
Sbjct: 99 FMSSSFFGPSMQPQARSTQQSDAFDPVSFLQNHLQHLRSSGTHVQFVVENHPSDPAHRIPGNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSGVKQMPCKHVFHQDCLLPWLELHNSCPVCRYELPTDDPDYENRAQ------------GVQGSGDGQGSVEGQQTPRRFNIQLPWPFR 301
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|565480706|ref|XP_006297993.1| (hypothetical protein CARUB_v10014036mg, partial [Capsella rubella] >gi|482566702|gb|EOA30891.1| hypothetical protein CARUB_v10014036mg, partial [Capsella rubella]) HSP 1 Score: 67.0106 bits (162), Expect = 3.925e-9 Identity = 45/195 (23.08%), Postives = 76/195 (38.97%), Query Frame = 0
Query: 46 AEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGS-GSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDR--------HCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWR 231
++A + S + + R G Q R G+ G + G G L + G + + L +V + C++C+ ++E+G + +PC+H +H DCL W+ H CP+C ++L +T H A G G G G E Q R ++ +PWP+R
Sbjct: 148 SDAFDPVSFLQNHLQHLRSSGTHVQFVIENHPSDAAHRMPGNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLQLHNSCPVCRFEL----STDDPDYEHRAQ----GIQASGDGQGSSEGQQTPR----RFSIQLPWPFR 330
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|727586242|ref|XP_010466163.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa]) HSP 1 Score: 66.6254 bits (161), Expect = 4.204e-9 Identity = 45/195 (23.08%), Postives = 74/195 (37.95%), Query Frame = 0
Query: 46 AEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGS-GSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDR--------HCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWR 231
++A + S + + R G Q R G+ G + G G L + G + + L +V + C++C+ ++E+G + +PC+H +H DCL W+ H CP+C Y+L + A G G G G E Q R N+ +PWP+R
Sbjct: 123 SDAFDPVSFLQNHLQHLRSSGTHVQFVVENHPSDPAHRIPGNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSGVKQMPCKHVFHQDCLLPWLELHNSCPVCRYELPTDDPDYENRAQ--------GVQASGDGQGSVEGQQTPR----RFNIQLPWPFR 305
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|727414981|ref|XP_010508254.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa]) HSP 1 Score: 66.6254 bits (161), Expect = 4.595e-9 Identity = 45/195 (23.08%), Postives = 74/195 (37.95%), Query Frame = 0
Query: 46 AEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGS-GSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDR--------HCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWR 231
++A + S + + R G Q R G+ G + G G L + G + + L +V + C++C+ ++E+G + +PC+H +H DCL W+ H CP+C Y+L + A G G G G E Q R N+ +PWP+R
Sbjct: 123 SDAFDPVSFLQNHLQHLRSSGTHVQFVVENHPSDPAHRIPGNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSGVKQMPCKHVFHQDCLLPWLELHNSCPVCRYELPTDDPDYENRAQ--------GVQASGDGQGSVEGQQTPR----RFNIQLPWPFR 305 The following BLAST results are available for this feature:
BLAST of EWM20583.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|