EWM20583.1, cds10090 (CDS) Nannochloropsis gaditana

Overview
NameEWM20583.1
Unique Namecds10090
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037262.1:90891..91697 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20583.1
ProductZinc finger, RING-type
Orig transcript idgnl|cribi|Naga_101076g3.7471.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:90891..91697 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|585100318|gb|EWM20583.1| (Zinc finger, RING-type [Nannochloropsis gaditana])

HSP 1 Score: 511.916 bits (1317), Expect = 0.000e+0
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query:    1 MLEARRQAELQGAGQEESADRGLSPRSKANLRRFAFRADSFRGAGAEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGSGSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDRHCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWRQGERRWGGGRGREGGRWGRGEPRGGEGNVVRIVRMEA 268
            MLEARRQAELQGAGQEESADRGLSPRSKANLRRFAFRADSFRGAGAEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGSGSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDRHCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWRQGERRWGGGRGREGGRWGRGEPRGGEGNVVRIVRMEA
Sbjct:    1 MLEARRQAELQGAGQEESADRGLSPRSKANLRRFAFRADSFRGAGAEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGSGSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDRHCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWRQGERRWGGGRGREGGRWGRGEPRGGEGNVVRIVRMEA 268          
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|672190267|ref|XP_008775202.1| (PREDICTED: E3 ubiquitin-protein ligase ATL31 [Phoenix dactylifera])

HSP 1 Score: 73.1738 bits (178), Expect = 3.164e-11
Identity = 48/149 (32.21%), Postives = 68/149 (45.64%), Query Frame = 0
Query:   77 GGREGGRED--GSGSWG-EGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDRHCSICLGDYEEGETLCLLP-CRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGD--LVGGGGAGDEEEAQLEEEAL 219
             G E GR    G   WG EG      E+       E  G+  G+E  E           C++CL ++E+ ETL LLP C H +H DC++ W++ HA CP+C  +L+       + AS+   P P      VGGG   D   A+  E  +
Sbjct:   82 NGTESGRVSVRGGAGWGQEGLDPAVLETFPTLVYSEVKGLRIGKEAPE-----------CAVCLSEFEDDETLRLLPKCSHVFHTDCIDTWLATHATCPVCRSNLVPDPDAPQTPASNLQPPAPAAVEGTVGGGERADAAPAEQVEITV 219          
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|299473238|emb|CBN77638.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.7886 bits (177), Expect = 5.813e-11
Identity = 48/120 (40.00%), Postives = 55/120 (45.83%), Query Frame = 0
Query:   62 GRGEGEKAQGGRRREGGREGGREDGSGSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRA-RVDRHCSICLGDYEEGETLCLLPCRHTYHDDCLNVWI--SAHAKCPLCNYDLL 178
            GR EGE A  G    GG     E G G  G      G E      GEE    E  E G    L         C IC G+Y EG+ LC LPCRHTYH +C++ W+    H+ CPLC   LL
Sbjct:  386 GRDEGESAIRGSCCGGGVADSDESGEGGSGSKPSVAGPEKRPPPEGEEFDDKEVPERGMTGGLSELWSSGESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLL 505          
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|1117458007|ref|XP_019424034.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Lupinus angustifolius] >gi|1117458009|ref|XP_019424035.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like [Lupinus angustifolius] >gi|1117458011|ref|XP_019424036.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like [Lupinus angustifolius] >gi|1102693973|gb|OIV93502.1| hypothetical protein TanjilG_11084 [Lupinus angustifolius])

HSP 1 Score: 71.633 bits (174), Expect = 8.745e-11
Identity = 41/132 (31.06%), Postives = 58/132 (43.94%), Query Frame = 0
Query:  133 CSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGG----GAGDEEEAQLEEEALARENMMMPWPWRQGE-RRWGGGRGREGGRWGRGEPRGGEGN 259
            C++C   +E  E    LPC+H YH DC+  W+  H  CP+C Y+L          A   A  + G   +        AGD  ++QL+     R N+ +PWP+RQ        G G +    G   P G  GN
Sbjct:  188 CAVCKDTFELNEIAKQLPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYEQRAQGGAGAVEGAVQINQNQDQSAAGDSSQSQLQSPREHRFNVALPWPFRQFYGDTSNVGTGNDNNTGGESNP-GSRGN 318          
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|923537386|ref|XP_013719737.1| (PREDICTED: RING-H2 finger protein ATL7-like [Brassica napus] >gi|923658898|ref|XP_013646949.1| PREDICTED: RING-H2 finger protein ATL7-like [Brassica napus] >gi|1079381306|ref|XP_009128720.2| PREDICTED: RING-H2 finger protein ATL7 [Brassica rapa] >gi|674891624|emb|CDY41122.1| BnaA02g23440D [Brassica napus])

HSP 1 Score: 68.5514 bits (166), Expect = 2.882e-10
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 0
Query:  130 DRHCSICLGDYEEGETLCLLP-CRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMAS-HAASPLPGGDLVGGGGAGDEEEAQLEEEALAR 221
            D  CS+CLGDY+  E L  +P C HT+H DC+++W++ H  CPLC   L+   +   S  +    S +   D   GGGA  + E+QL  E ++ 
Sbjct:  108 DSQCSVCLGDYQANEKLQQIPPCGHTFHMDCIDLWLTLHTTCPLCRLSLIPKSSLDRSQQNLETVSSISNSD---GGGASAQPESQLVGEIVSH 198          
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|721655475|ref|XP_010234201.1| (PREDICTED: RING-H2 finger protein ATL1-like [Brachypodium distachyon] >gi|944059095|gb|KQJ94685.1| hypothetical protein BRADI_3g12560 [Brachypodium distachyon])

HSP 1 Score: 68.5514 bits (166), Expect = 6.937e-10
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 0
Query:  125 KRARVDRHCSICLGDYEEGETLCLLP-CRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGD 199
            K+A V   C++CLG++ EGE L  LP C H +H DC++ W+ A A CPLC  D ++A+     +AS A+   PGGD
Sbjct:  100 KKAAVASECAVCLGEFSEGERLRRLPACLHAFHIDCIDAWLHATANCPLCRAD-VVAEHRVIDIASPASPSPPGGD 174          
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|727633764|ref|XP_010487953.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa])

HSP 1 Score: 67.3958 bits (163), Expect = 2.330e-9
Identity = 47/215 (21.86%), Postives = 82/215 (38.14%), Query Frame = 0
Query:   36 FRADSFRGAG----------AEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGS-GSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDR--------HCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWR 231
            F + SF G            ++A +  S  +   +  R  G   Q            R  G+ G +  G G       L      + G     +   + L   +V +         C++C+ ++E+G  +  +PC+H +H DCL  W+  H  CP+C Y+L        + A             G  G+GD + +   ++   R N+ +PWP+R
Sbjct:   99 FMSSSFFGPSMQPQARSTQQSDAFDPVSFLQNHLQHLRSSGTHVQFVVENHPSDPAHRIPGNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSGVKQMPCKHVFHQDCLLPWLELHNSCPVCRYELPTDDPDYENRAQ------------GVQGSGDGQGSVEGQQTPRRFNIQLPWPFR 301          
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|565480706|ref|XP_006297993.1| (hypothetical protein CARUB_v10014036mg, partial [Capsella rubella] >gi|482566702|gb|EOA30891.1| hypothetical protein CARUB_v10014036mg, partial [Capsella rubella])

HSP 1 Score: 67.0106 bits (162), Expect = 3.925e-9
Identity = 45/195 (23.08%), Postives = 76/195 (38.97%), Query Frame = 0
Query:   46 AEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGS-GSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDR--------HCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWR 231
            ++A +  S  +   +  R  G   Q            R  G+ G +  G G       L      + G     +   + L   +V +         C++C+ ++E+G  +  +PC+H +H DCL  W+  H  CP+C ++L    +T      H A     G    G G G  E  Q       R ++ +PWP+R
Sbjct:  148 SDAFDPVSFLQNHLQHLRSSGTHVQFVIENHPSDAAHRMPGNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLQLHNSCPVCRFEL----STDDPDYEHRAQ----GIQASGDGQGSSEGQQTPR----RFSIQLPWPFR 330          
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|727586242|ref|XP_010466163.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa])

HSP 1 Score: 66.6254 bits (161), Expect = 4.204e-9
Identity = 45/195 (23.08%), Postives = 74/195 (37.95%), Query Frame = 0
Query:   46 AEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGS-GSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDR--------HCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWR 231
            ++A +  S  +   +  R  G   Q            R  G+ G +  G G       L      + G     +   + L   +V +         C++C+ ++E+G  +  +PC+H +H DCL  W+  H  CP+C Y+L        + A         G    G G G  E  Q       R N+ +PWP+R
Sbjct:  123 SDAFDPVSFLQNHLQHLRSSGTHVQFVVENHPSDPAHRIPGNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSGVKQMPCKHVFHQDCLLPWLELHNSCPVCRYELPTDDPDYENRAQ--------GVQASGDGQGSVEGQQTPR----RFNIQLPWPFR 305          
BLAST of EWM20583.1 vs. NCBI_GenBank
Match: gi|727414981|ref|XP_010508254.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Camelina sativa])

HSP 1 Score: 66.6254 bits (161), Expect = 4.595e-9
Identity = 45/195 (23.08%), Postives = 74/195 (37.95%), Query Frame = 0
Query:   46 AEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGREGGREDGS-GSWGEGSGRVGRESALEGAGEEKGGMEGGEEGGEECLKRARVDR--------HCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAASMASHAASPLPGGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWR 231
            ++A +  S  +   +  R  G   Q            R  G+ G +  G G       L      + G     +   + L   +V +         C++C+ ++E+G  +  +PC+H +H DCL  W+  H  CP+C Y+L        + A         G    G G G  E  Q       R N+ +PWP+R
Sbjct:  123 SDAFDPVSFLQNHLQHLRSSGTHVQFVVENHPSDPAHRIPGNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSGVKQMPCKHVFHQDCLLPWLELHNSCPVCRYELPTDDPDYENRAQ--------GVQASGDGQGSVEGQQTPR----RFNIQLPWPFR 305          
The following BLAST results are available for this feature:
BLAST of EWM20583.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100318|gb|EWM20583.1|0.000e+0100.00Zinc finger, RING-type [Nannochloropsis gaditana][more]
gi|672190267|ref|XP_008775202.1|3.164e-1132.21PREDICTED: E3 ubiquitin-protein ligase ATL31 [Phoe... [more]
gi|299473238|emb|CBN77638.1|5.813e-1140.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|1117458007|ref|XP_019424034.1|8.745e-1131.06PREDICTED: E3 ubiquitin-protein ligase RING1-like ... [more]
gi|923537386|ref|XP_013719737.1|2.882e-1037.23PREDICTED: RING-H2 finger protein ATL7-like [Brass... [more]
gi|721655475|ref|XP_010234201.1|6.937e-1044.74PREDICTED: RING-H2 finger protein ATL1-like [Brach... [more]
gi|727633764|ref|XP_010487953.1|2.330e-921.86PREDICTED: E3 ubiquitin-protein ligase RING1-like ... [more]
gi|565480706|ref|XP_006297993.1|3.925e-923.08hypothetical protein CARUB_v10014036mg, partial [C... [more]
gi|727586242|ref|XP_010466163.1|4.204e-923.08PREDICTED: E3 ubiquitin-protein ligase RING1-like ... [more]
gi|727414981|ref|XP_010508254.1|4.595e-923.08PREDICTED: E3 ubiquitin-protein ligase RING1-like ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10121rna10121Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications