rna1012, rna1012 (mRNA) Nannochloropsis gaditana

Overview
Namerna1012
Unique Namerna1012
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2074
Alignment locationCM002456.1:959409..960036 +

Link to JBrowse

Properties
Property NameValue
Productglutamyl-trna amidotransferase subunit c
Orig transcript idgnl|cribi|Naga_100112g7.5448.mrna
Orig protein idgnl|cribi|Naga_100112g7.5448
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:959409..960036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100112g7gene975Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1012rna1012-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29665.1cds1011Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1012 ID=rna1012|Name=rna1012|organism=Nannochloropsis gaditana|type=mRNA|length=2074bp
TATCAATATTCAGCGCATCTGAGGTCTGCGTTATCCTTTACAATCTTAAA
CTGAGATGCACCTTGTGCCCCCTCTCGATAAATGCACATTTTCTCGCACA
GGAATCTGTCGATAGGCCACGGTATTAAAGAGGCAATCTGTCCTTGCCCT
AGAAATAGCGATTGGCTGGAGAAAGGATGTACTCTTGCTCTGGTCGCGGC
CGTATACCCCTAAAAGGCTCTGCTTGCTGGATTGTCTTTCTCATTCTTCA
GGGCCTTGGATCGGTCACTGCTAAAATCGTGTCAGGACAAGTAGCTCTAA
GCAGTGGCAAACCCTGGGCATATCTCAGCAAGTTTTCGTATTCTCTTGGT
ACAGGCAACTTCACTCTGGAAGTCACAGAGGCATCGTCAAAACGCCAGAA
GCCCACTCCCTCCTTCGGCAAGTCAAATGGCGCCCGCTTCTTTCTCTATT
TAGACGAGGACTGGGAGGATGCCTTGGCCGCCCCAACATGTCAGGAGAAA
CTCAAATTTGCTAAATGGCAATCAGCATCCCTCCGCTCGGCTCCCCCCCT
CAAGCATGCGGTCAGTCAGAGCATTCGGCCGCACTTCTGGTATTTCGTTC
TCGCGGACTGCGAGGCCGAACCGAGCGCCACCCTTTTGAACTATCGCCTT
AAGATGTACAACGCCGACGGGTCCCATTTTTCACACGAGGAGAAGGCCCC
TTCACGTCTTCTTCCCGTCCTGGCAGTGGGCTTCCTCATCTCCATGGGCC
CACTCCTTGTCCTCCTCCAGAGCTATCGAAGCCGCACCCGTGGCCAGCGC
CTGCACCCCTCCATCCTGAATCTGGGCGCGGCCTTGCTTCTCTTCCTTAC
CAGCTTGACCTTGGAAACAGTCAACTACTGGATGTACGCGAAGAACGGGG
AGGGGCTTCGCCTGACCGATATCGGCGCCGAGCTTGCGAATTGGCTGGCG
CAGCTGGTAGTCTCGCTCGAGCTCCTCAGCATCGCCTGGGTCTGGAGCGT
GGACACTGTCCTGACCCCCTCGCGCAAACAGCGGGCGGGTCGCAGCATCA
TGTACCGAATGGTGGGAGGCCTGGTCGTCCTCCATGTCGCCTGCATCCTG
CTAGGACGCGTGTACGACGACGCGCACTCCAAATACCACGAGAGCGAGAC
GGTGTGGGCGCTCGGCCTGATCGGGATGCGCCTCCTCCTCGGCGGTCTCT
TTGCCGCGGGGGTGCAAAACCTGTTGGTCCGGGAGAACAACTTGCTGCAA
CGGACTTTCCTTATGCGCCTGGGGGCCTTGGGGGGCGCCTACTTCATCTC
CATTCCCGTCGTCATCACCGTGGCATCTACCTTCTTCGCGCGCTACCTGC
GGCATCAAGTCGTGACCGTCGGGTCGGCAGCTGTCCAGGTCTTCTCATTG
GTCGGGCTCTCTATCTTACTGCTAACCCGCAACGAATACACGGAGTTATC
CTCACTCTCATCCTGCTCGCTGCCCTCGATCAAGCTAGCCTAAACTGACG
AGGAAGATAGCGGAGCGACGAGAAGCCCGGAAAACAGAGCGGTGGATTGA
CTGAAAGACACAATTAGATTAGAAACATCCCACTGAGCAAAAATTCATAA
TGACATGTAGAAAGCCATAAATCAGTCCGAGCCGAGGATGTGAAAGTACT
CACAAGGGAAGTGCCGGGCACCTCGCCGTAAACCTTACTGTCTTGCATCG
ATTTCCGAAAATCTGATAACAAATATCGGCTTGAGAAAAAGAGCGAGAAG
AAGTGCTGAATGATAAGTGCTATTTTTCTCGTTAGCGGGCGCACTCGCTG
TAGGTAGCGCTTGTTTTTATTGGGGACTTCCTTTAAAAAGGTACCGATCT
TTGTCCAAAGACGTGACAATAGATGCATGGATGCTTCTTACACATTCAGG
ATGGCGTTGGGCGCGGTAGAAGAGCATGTCAGAACGATAGAAGAAAATGC
ATTGCTGGCGTAGATAATTAGAAAACATGCGTCACACCAGTGGTTTGATC
GCTTTTTGCTGCTTTTCATCCTGAAAAAAAAGCAAAAACCATAAATTCAT
GGCAGTAGATTGAAGAAAATTTTC
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protein sequence of rna1012

>rna1012-protein ID=rna1012-protein|Name=rna1012|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
MRDKALTSTLILQALLKGSAFLLPLAPSLPSSRLAAADSPSSSSLRQQPE
VTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSA
PDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGEEDT
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mRNA from alignment at CM002456.1:959409..960036+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1012 ID=rna1012|Name=rna1012|organism=Nannochloropsis gaditana|type=mRNA|length=628bp|location=Sequence derived from alignment at CM002456.1:959409..960036+ (Nannochloropsis gaditana)
AAAACTGTCCCGTCGTTCCTGTCTCCAAGCAAAGATCCAGGCAAAGACTC
ACCAAGTTCACACACTACTGTAGGATACAGATCATGAGGGACAAAGCTTT
GACTTCTACGCTCATTTTGCAGGCCTTACTGAAAGGGAGCGCTTTTCTTC
tgccccttgctccttcacTTCCATCATCCCGCCTCGCCGCAGCCGattcg
ccctcgtcctcctccctgcgacAACAACCAGAGGTGACGCCGGAGCTCAT
AAAACATACAGCCACTCTTGCTCAGCTCCATTTCGATGAGGATGAGATTC
AAAATATGATCCCCAGGTTTCAGGCATTTCTCAGCTTCGTAGACAGAATG
CAAGACGTCCCGGACTCTGCCGCCGTCAGTGCTCCTGACTCTATGCCTAC
CGTACAAGAGGTCCTGCGTCCTGATAGCCCGTCCATCTTCCCAAACCAAG
ACGCAATATTTACAAATATGGCTGAGCAGGAGGATGCGTTCTTACGTGTT
CCCAAAGttggagaggaagacacaTAGCATGCCCTGCTGTAACTTTTGTA
GGAACTGCAACGACGAAGGATATCAGATGGTCTCTGATGGTAGCAAATCT
AAAGAACAAACTTGATGGAAACTTACAC
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Coding sequence (CDS) from alignment at CM002456.1:959409..960036+

>rna1012 ID=rna1012|Name=rna1012|organism=Nannochloropsis gaditana|type=CDS|length=444bp|location=Sequence derived from alignment at CM002456.1:959409..960036+ (Nannochloropsis gaditana)
ATGAGGGACAAAGCTTTGACTTCTACGCTCATTTTGCAGGCCTTACTGAA
AGGGAGCGCTTTTCTTCtgccccttgctccttcacTTCCATCATCCCGCC
TCGCCGCAGCCGattcgccctcgtcctcctccctgcgacAACAACCAGAG
GTGACGCCGGAGCTCATAAAACATACAGCCACTCTTGCTCAGCTCCATTT
CGATGAGGATGAGATTCAAAATATGATCCCCAGGTTTCAGGCATTTCTCA
GCTTCGTAGACAGAATGCAAGACGTCCCGGACTCTGCCGCCGTCAGTGCT
CCTGACTCTATGCCTACCGTACAAGAGGTCCTGCGTCCTGATAGCCCGTC
CATCTTCCCAAACCAAGACGCAATATTTACAAATATGGCTGAGCAGGAGG
ATGCGTTCTTACGTGTTCCCAAAGttggagaggaagacacaTAG
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Synonyms
Publications