EWM29665.1, cds1011 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|585112239|gb|EWM29665.1| (glutamyl-trna amidotransferase subunit c [Nannochloropsis gaditana]) HSP 1 Score: 290.812 bits (743), Expect = 1.995e-99 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0 Query: 1 MRDKALTSTLILQALLKGSAFLLPLAPSLPSSRLAAADSPSSSSLRQQPEVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGEEDT 147 MRDKALTSTLILQALLKGSAFLLPLAPSLPSSRLAAADSPSSSSLRQQPEVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGEEDT Sbjct: 1 MRDKALTSTLILQALLKGSAFLLPLAPSLPSSRLAAADSPSSSSLRQQPEVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGEEDT 147
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|298706474|emb|CBJ29461.1| (glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit [Ectocarpus siliculosus]) HSP 1 Score: 76.6406 bits (187), Expect = 7.920e-15 Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 0 Query: 30 PSSRLAAADSPSSSSLRQQPEVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGEED 146 PS AA P+++ + ++TP+L++ TA LAQ+ ++E+ + PR + FL FV+ M++V + A+ A ++ + LR DS F N AI NM +E +LRVPKVGE++ Sbjct: 51 PSRNSCAAALPATTKV----DITPDLVRKTAMLAQIQVSDEEVDVLAPRMEEFLGFVETMKEVAE-ASDGAFATLNCGSDFLREDSADRFSNVAAIMENMPIEEGNYLRVPKVGEDE 162
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|873232736|emb|CEM04546.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 70.4774 bits (171), Expect = 2.401e-12 Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 0 Query: 51 VTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAA---VSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGE 144 V L++ TA LA L +DE+ M+ +F+ FL FVD M+ + S V +P + ++ LR D+ F N++AI NM E+ED FLR+P+VGE Sbjct: 87 VDEALVRKTAALAHLDLTDDEVSEMVHQFKDFLRFVDDMKAIDTSQLDIDVMSPRASVPYRDPLREDTVQPFDNREAIVANMPEEEDGFLRIPRVGE 183
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|546299344|ref|XP_005710788.1| (unnamed protein product [Chondrus crispus] >gi|507106930|emb|CDF40494.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 67.3958 bits (163), Expect = 4.851e-11 Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 0 Query: 41 SSSSLRQQPEVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGEEDT 147 S+SS+ E TPE +K A LAQL+ EDEI M P Q + F + + ++ D S VLR D P +F N DAI + E F+RVPK+ E + Sbjct: 89 SASSIEACAEATPEEVKRIARLAQLNLSEDEITTMTPELQKVIGFFNSINEI-DVEGFEPMASPSDANNVLRDDVPVMFSNVDAIMDEVPVAEKEFIRVPKISSESS 194
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|654419608|ref|WP_027890869.1| (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C [Megamonas hypermegale] >gi|1198555956|gb|OUO41210.1| aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [Megamonas hypermegale]) HSP 1 Score: 62.003 bits (149), Expect = 6.351e-10 Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 0 Query: 50 EVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPD--SPSIFPNQDAIFTNMAEQEDAFLRVPKVGEE 145 +VT E +++ A L++L DE ++ I FL +VDR+Q V D+ V+A + +Q V R D PS+ N+D +N EQED + RVPK+ EE Sbjct: 2 KVTREDVENVALLSRLRIDEKDMDKNIQELSDFLEYVDRLQQV-DTENVAATAHVLPIQNVFREDVVKPSL--NRDLALSNAPEQEDGYFRVPKIVEE 96
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|524607934|emb|CDD27821.1| (aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [Clostridium sp. CAG:452]) HSP 1 Score: 58.151 bits (139), Expect = 2.007e-8 Identity = 35/97 (36.08%), Postives = 48/97 (49.48%), Query Frame = 0 Query: 49 PEVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQE---VLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKV 142 +V+ E I+H A LA+L +EDEI N I Q L F DV ++A V D E V R D IF + +A+ N E+E ++PKV Sbjct: 2 KKVSKEEIRHIANLARLELNEDEIDNYIENLQDILDFA----DVVNNAPVQDLDITIGTNEAKNVFRKDEVKIFEDNEALLANAKEKERNMFKIPKV 94
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|493357406|ref|WP_006313947.1| (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C [Caldisalinibacter kiritimatiensis] >gi|485595607|gb|EOD00303.1| Aspartyl-tRNA(Asn) amidotransferase subunit C / Glutamyl-tRNA(Gln) amidotransferase subunit C [Caldisalinibacter kiritimatiensis]) HSP 1 Score: 57.3806 bits (137), Expect = 3.639e-8 Identity = 30/93 (32.26%), Postives = 56/93 (60.22%), Query Frame = 0 Query: 51 VTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPT-VQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKV 142 +T E +KH A L++L F EDEIQ+ +F + L +VD++++V D+ V P P V+ V+R D +++ +N ++++ + ++PKV Sbjct: 3 ITKEDVKHVAKLSRLEFSEDEIQDFTEKFASVLEYVDKLKEV-DTKGVE-PTYHPHPVKNVMREDVVKESLSREKALSNAPDKQNGYFKIPKV 93
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|1172502717|ref|WP_080873687.1| (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C [Oceanobacillus timonensis]) HSP 1 Score: 55.8398 bits (133), Expect = 1.935e-7 Identity = 26/93 (27.96%), Postives = 51/93 (54.84%), Query Frame = 0 Query: 50 EVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKV 142 E++ E +KH A LA+L FD+ E++ M A + + +++ ++ D+ V + ++ V+R D P + Q+ N +Q+D +RVP + Sbjct: 3 EISKEQVKHVANLARLEFDDAEVEQMASELSAIIEYAEQLNEL-DTENVKPTTHVLDLKNVMRKDEPKKWITQEEALKNAPDQKDGQIRVPSI 94
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|968554084|ref|WP_058581311.1| (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C [Haloprofundus marisrubri] >gi|966676641|gb|KTG09956.1| glutamyl-tRNA amidotransferase [Haloprofundus marisrubri]) HSP 1 Score: 55.4546 bits (132), Expect = 2.212e-7 Identity = 29/92 (31.52%), Postives = 50/92 (54.35%), Query Frame = 0 Query: 51 VTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKV 142 V + ++H ATLA++ D+DE++ +F L++ D + +VP+ D+ + V+RPD +Q+ +N AE ED F + PKV Sbjct: 6 VDADEVRHVATLARVDLDDDEVEEFTAQFADILTYFDALDEVPE------VDTETELVNVMRPDEVHEGLSQEEALSNAAESEDGFFKGPKV 91
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|751275913|ref|WP_040984776.1| (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C [Oceanobacillus jeddahense]) HSP 1 Score: 55.0694 bits (131), Expect = 3.340e-7 Identity = 26/95 (27.37%), Postives = 52/95 (54.74%), Query Frame = 0 Query: 50 EVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGE 144 E++ E +KH A LA+L FD++ ++ M A + + +++ ++ D+ V + ++ V+R D P + Q+ N +Q+D +RVP + E Sbjct: 3 EISKEQVKHVANLARLEFDDESVEQMATELSAIIEYAEQLNEL-DTENVKPTTHVLDLKNVMRKDEPKKWITQEEALKNAPDQKDGQIRVPSILE 96 The following BLAST results are available for this feature:
BLAST of EWM29665.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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