EWM29665.1, cds1011 (CDS) Nannochloropsis gaditana

Overview
NameEWM29665.1
Unique Namecds1011
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:959492..959935 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29665.1
Productglutamyl-trna amidotransferase subunit c
Orig transcript idgnl|cribi|Naga_100112g7.5448.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:959492..959935 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008150biological_process
GO:0006450regulation of translational fidelity
Vocabulary: INTERPRO
TermDefinition
IPR003837Asp/Glu-ADT_csu
Homology
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|585112239|gb|EWM29665.1| (glutamyl-trna amidotransferase subunit c [Nannochloropsis gaditana])

HSP 1 Score: 290.812 bits (743), Expect = 1.995e-99
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query:    1 MRDKALTSTLILQALLKGSAFLLPLAPSLPSSRLAAADSPSSSSLRQQPEVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGEEDT 147
            MRDKALTSTLILQALLKGSAFLLPLAPSLPSSRLAAADSPSSSSLRQQPEVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGEEDT
Sbjct:    1 MRDKALTSTLILQALLKGSAFLLPLAPSLPSSRLAAADSPSSSSLRQQPEVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGEEDT 147          
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|298706474|emb|CBJ29461.1| (glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit [Ectocarpus siliculosus])

HSP 1 Score: 76.6406 bits (187), Expect = 7.920e-15
Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 0
Query:   30 PSSRLAAADSPSSSSLRQQPEVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGEED 146
            PS    AA  P+++ +    ++TP+L++ TA LAQ+   ++E+  + PR + FL FV+ M++V + A+  A  ++    + LR DS   F N  AI  NM  +E  +LRVPKVGE++
Sbjct:   51 PSRNSCAAALPATTKV----DITPDLVRKTAMLAQIQVSDEEVDVLAPRMEEFLGFVETMKEVAE-ASDGAFATLNCGSDFLREDSADRFSNVAAIMENMPIEEGNYLRVPKVGEDE 162          
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|873232736|emb|CEM04546.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 70.4774 bits (171), Expect = 2.401e-12
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 0
Query:   51 VTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAA---VSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGE 144
            V   L++ TA LA L   +DE+  M+ +F+ FL FVD M+ +  S     V +P +    ++ LR D+   F N++AI  NM E+ED FLR+P+VGE
Sbjct:   87 VDEALVRKTAALAHLDLTDDEVSEMVHQFKDFLRFVDDMKAIDTSQLDIDVMSPRASVPYRDPLREDTVQPFDNREAIVANMPEEEDGFLRIPRVGE 183          
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|546299344|ref|XP_005710788.1| (unnamed protein product [Chondrus crispus] >gi|507106930|emb|CDF40494.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 67.3958 bits (163), Expect = 4.851e-11
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 0
Query:   41 SSSSLRQQPEVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGEEDT 147
            S+SS+    E TPE +K  A LAQL+  EDEI  M P  Q  + F + + ++ D        S      VLR D P +F N DAI   +   E  F+RVPK+  E +
Sbjct:   89 SASSIEACAEATPEEVKRIARLAQLNLSEDEITTMTPELQKVIGFFNSINEI-DVEGFEPMASPSDANNVLRDDVPVMFSNVDAIMDEVPVAEKEFIRVPKISSESS 194          
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|654419608|ref|WP_027890869.1| (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C [Megamonas hypermegale] >gi|1198555956|gb|OUO41210.1| aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [Megamonas hypermegale])

HSP 1 Score: 62.003 bits (149), Expect = 6.351e-10
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 0
Query:   50 EVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPD--SPSIFPNQDAIFTNMAEQEDAFLRVPKVGEE 145
            +VT E +++ A L++L  DE ++   I     FL +VDR+Q V D+  V+A   +  +Q V R D   PS+  N+D   +N  EQED + RVPK+ EE
Sbjct:    2 KVTREDVENVALLSRLRIDEKDMDKNIQELSDFLEYVDRLQQV-DTENVAATAHVLPIQNVFREDVVKPSL--NRDLALSNAPEQEDGYFRVPKIVEE 96          
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|524607934|emb|CDD27821.1| (aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [Clostridium sp. CAG:452])

HSP 1 Score: 58.151 bits (139), Expect = 2.007e-8
Identity = 35/97 (36.08%), Postives = 48/97 (49.48%), Query Frame = 0
Query:   49 PEVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQE---VLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKV 142
             +V+ E I+H A LA+L  +EDEI N I   Q  L F     DV ++A V   D      E   V R D   IF + +A+  N  E+E    ++PKV
Sbjct:    2 KKVSKEEIRHIANLARLELNEDEIDNYIENLQDILDFA----DVVNNAPVQDLDITIGTNEAKNVFRKDEVKIFEDNEALLANAKEKERNMFKIPKV 94          
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|493357406|ref|WP_006313947.1| (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C [Caldisalinibacter kiritimatiensis] >gi|485595607|gb|EOD00303.1| Aspartyl-tRNA(Asn) amidotransferase subunit C / Glutamyl-tRNA(Gln) amidotransferase subunit C [Caldisalinibacter kiritimatiensis])

HSP 1 Score: 57.3806 bits (137), Expect = 3.639e-8
Identity = 30/93 (32.26%), Postives = 56/93 (60.22%), Query Frame = 0
Query:   51 VTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPT-VQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKV 142
            +T E +KH A L++L F EDEIQ+   +F + L +VD++++V D+  V  P   P  V+ V+R D      +++   +N  ++++ + ++PKV
Sbjct:    3 ITKEDVKHVAKLSRLEFSEDEIQDFTEKFASVLEYVDKLKEV-DTKGVE-PTYHPHPVKNVMREDVVKESLSREKALSNAPDKQNGYFKIPKV 93          
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|1172502717|ref|WP_080873687.1| (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C [Oceanobacillus timonensis])

HSP 1 Score: 55.8398 bits (133), Expect = 1.935e-7
Identity = 26/93 (27.96%), Postives = 51/93 (54.84%), Query Frame = 0
Query:   50 EVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKV 142
            E++ E +KH A LA+L FD+ E++ M     A + + +++ ++ D+  V     +  ++ V+R D P  +  Q+    N  +Q+D  +RVP +
Sbjct:    3 EISKEQVKHVANLARLEFDDAEVEQMASELSAIIEYAEQLNEL-DTENVKPTTHVLDLKNVMRKDEPKKWITQEEALKNAPDQKDGQIRVPSI 94          
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|968554084|ref|WP_058581311.1| (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C [Haloprofundus marisrubri] >gi|966676641|gb|KTG09956.1| glutamyl-tRNA amidotransferase [Haloprofundus marisrubri])

HSP 1 Score: 55.4546 bits (132), Expect = 2.212e-7
Identity = 29/92 (31.52%), Postives = 50/92 (54.35%), Query Frame = 0
Query:   51 VTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKV 142
            V  + ++H ATLA++  D+DE++    +F   L++ D + +VP+       D+   +  V+RPD      +Q+   +N AE ED F + PKV
Sbjct:    6 VDADEVRHVATLARVDLDDDEVEEFTAQFADILTYFDALDEVPE------VDTETELVNVMRPDEVHEGLSQEEALSNAAESEDGFFKGPKV 91          
BLAST of EWM29665.1 vs. NCBI_GenBank
Match: gi|751275913|ref|WP_040984776.1| (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C [Oceanobacillus jeddahense])

HSP 1 Score: 55.0694 bits (131), Expect = 3.340e-7
Identity = 26/95 (27.37%), Postives = 52/95 (54.74%), Query Frame = 0
Query:   50 EVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGE 144
            E++ E +KH A LA+L FD++ ++ M     A + + +++ ++ D+  V     +  ++ V+R D P  +  Q+    N  +Q+D  +RVP + E
Sbjct:    3 EISKEQVKHVANLARLEFDDESVEQMATELSAIIEYAEQLNEL-DTENVKPTTHVLDLKNVMRKDEPKKWITQEEALKNAPDQKDGQIRVPSILE 96          
The following BLAST results are available for this feature:
BLAST of EWM29665.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112239|gb|EWM29665.1|1.995e-99100.00glutamyl-trna amidotransferase subunit c [Nannochl... [more]
gi|298706474|emb|CBJ29461.1|7.920e-1536.75glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amido... [more]
gi|873232736|emb|CEM04546.1|2.401e-1240.21unnamed protein product [Vitrella brassicaformis C... [more]
gi|546299344|ref|XP_005710788.1|4.851e-1137.38unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|654419608|ref|WP_027890869.1|6.351e-1038.78Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCA... [more]
gi|524607934|emb|CDD27821.1|2.007e-836.08aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
gi|493357406|ref|WP_006313947.1|3.639e-832.26Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCA... [more]
gi|1172502717|ref|WP_080873687.1|1.935e-727.96Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCA... [more]
gi|968554084|ref|WP_058581311.1|2.212e-731.52Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCA... [more]
gi|751275913|ref|WP_040984776.1|3.340e-727.37Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCA... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1012rna1012Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications