rna10116, rna10116 (mRNA) Nannochloropsis gaditana

Overview
Namerna10116
Unique Namerna10116
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1719
Alignment locationKK037262.1:82126..82380 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100649g3.9567.mrna
Orig protein idgnl|cribi|Naga_100649g3.9567
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:82126..82380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100649g3gene9819Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10116rna10116-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20589.1cds10085Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10116 ID=rna10116|Name=rna10116|organism=Nannochloropsis gaditana|type=mRNA|length=1719bp
GAATCGCGCCTGTCGTACGGCCCGCGTTCTTCTCCAGGCGAGAGTCACGT
CATACTCGGTCTGCGGAGTCAACTCGGAAATTGGGGAAAAGGTTGACACC
TCTTGGTTTTGTCTCCATAATCCTTTGTAGTGTCTAAGTCACAAAAATGC
TTTGATCCTCCCGGTAAAAGCTCCACTTTCTCCTCCTTCTCGCCGGTAAC
GACTCTCTCGCTTCAACTTCCATGACATTAAGTCTTGACACGTATCAGCA
AGTGGACGACAGCTTTGATCCTCGACTCGAGACACTTTGTATTTCACCTC
AATTTTCTAATTGATGGCTTCCTTTGCCCCCTTTTCACAGAGAAACAGCC
TGGCAAATCGCATCTCCTCGCTTTCGGAGAACCTTGGCACGGGGTTGGAC
CGTGTCCTGACCCGTAGACCTTTCCCCCGGGAGGCTGTCGATTTGACGGC
TTTATGTGGGCGCTTCTTCTCACGCTCGCGACCTACTGGCGCGCTCTGTT
CTATTTTTGGTGGTCGAATGGCGATTTCATTGGTTGTCCATTGCTGAAAG
GCGAGGTAAATCTGGCAGCCAAGATCCACGTGTACGGCATCTGGCTGGAC
CTCTACCTGTGGGCCCTCCCCCACTATCGAGCGCCATCCTACCGCCACGA
CTTGCTCGCAAACCTGCGCAACGTGGCCCTGCCTGGCACGGGAATACCAC
TGAGCACCTTTTGCGTCGCGAAGCCCGTGGCCTGGGTGTTTTTCCTGTTT
TTGTACCCGCTGGCCGCCATGGCGGGGGCCGTCAACGTAGCCCGCACCGC
GAGAGGCCTCCGCGGGAAGTACGCAGCCCTGGCCGCTGCCTTTCACGAGC
ACCTGCTGGCGCCGCAGGACTGGTTTAGCTACTGGCGCCTCAACTCGCGC
ATGGCGGCCTATCACCAGGTCCTGACCGGCAGTCCCGGCTACGCCCAGGA
GGACAAGTGGACCTTTTTGAGGGAGGGGGCGCGCCTGGGGGTGCCCGTTT
CTCCCGTGCTCGAGCACGCGAGCATCGTGGTCAAGAACAAGAACGAGGAG
GGCGGGCTCGGCATCTACTTCTACCGAAACGCCCTGGCTGGCGGGGACTG
GATCATCCAAGAGCGCCTGGAGAACTCGGACTTCCTTCGCCAGCACCTCC
TGCCTCCGGGCGCCCCCCTCTCCACCCTCCGCGTCATCACCGCCTCCCGC
GGGGGCCTCACTCCCGCCGATCCGCGCCTGGGCCATGCCCCTACCGACGA
GGGCTTCTCCGCCCTCCCCGTCGACCACATCCAGGCCCTCTCCTGCGTCT
TCCGCGCCGGTCGGGCGGGCGCCGCCACGGACCACGCCTCCATCCTCTTC
GACGTGGACGCCGAGACGGGCCGCGTCCGCGAGGGCTCCACCAATGCCCA
CTGGTACCAGCTGGGCCTCCGCTCCATCCCGCGCACGCCCTGGCGCTCCC
GCTACCGGACCGCGGCCCATCCCGACGCCCCCGCCCGCCCGCTGACGGGG
CTCCAAATCCCCGACATGGGCGGTATCCGGCGTCTGGTCCGACGGGCGCA
TTTCCTCATGCTCCCGGACGTGCCGCTCGTCGGCTGGGACGTGGCGCTCA
CGACCAAGGGCCTGGTTCTCCTGGAGGTGAACCTCTCCTGCAACTTCTTC
CGAGGCACCTTCCAGAAGGGCCCCTACTTCCAGTTCTGCCGCGACTACCT
GGACGTGCTCCAAAAATTG
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protein sequence of rna10116

>rna10116-protein ID=rna10116-protein|Name=rna10116|organism=Nannochloropsis gaditana|type=polypeptide|length=69bp
METKPRGVNLFPNFRNAGRTTGAIPAIIGPEVELPAITEPVHPVFWQRNA
FCLAHCGCSITNSWTAIRG
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mRNA from alignment at KK037262.1:82126..82380+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10116 ID=rna10116|Name=rna10116|organism=Nannochloropsis gaditana|type=mRNA|length=255bp|location=Sequence derived from alignment at KK037262.1:82126..82380+ (Nannochloropsis gaditana)
ATGGAGACAAAACCAAGAGGTGTCAACCTTTTCCCCAATTTCCGAGTTGA
CTCCGCAGACCGAGTATGACGTGACTCTCGCCTGGAGAAGAACGCGGGCC
GTACGACAGGCGCGATTCCTGCCATTATAGGCCCCGAGGTGGAGTTACCT
GCTATCACAGAACCAGTACATCCTGTCTTTTGGCAAAGAAATGCATTTTG
CTTGGCTCATTGTGGCTGTAGCATAACAAATTCCTGGACGGCCATCAGGG
GATAA
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Coding sequence (CDS) from alignment at KK037262.1:82126..82380+

>rna10116 ID=rna10116|Name=rna10116|organism=Nannochloropsis gaditana|type=CDS|length=420bp|location=Sequence derived from alignment at KK037262.1:82126..82380+ (Nannochloropsis gaditana)
ATGGAGACAAAACCAAGAGGTGTCAACCTTTTCCCCAATTTCCGAAACGC
GGGCCGTACGACAGGCGCGATTCCTGCCATTATAGGCCCCGAGGTGGAGT
TACCTGCTATCACAGAACCAGTACATCCTGTCTTTTGGCAAAGAAATGCA
TTTTGCTTGGCTCATTGTGGCTGTAGCATAACAAATTCCTGGACGGCCAT
CAGGGGATAAATGGAGACAAAACCAAGAGGTGTCAACCTTTTCCCCAATT
TCCGAAACGCGGGCCGTACGACAGGCGCGATTCCTGCCATTATAGGCCCC
GAGGTGGAGTTACCTGCTATCACAGAACCAGTACATCCTGTCTTTTGGCA
AAGAAATGCATTTTGCTTGGCTCATTGTGGCTGTAGCATAACAAATTCCT
GGACGGCCATCAGGGGATAA
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Synonyms
Publications