rna10113, rna10113 (mRNA) Nannochloropsis gaditana

Overview
Namerna10113
Unique Namerna10113
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1375
Alignment locationKK037262.1:76552..77345 +

Link to JBrowse

Properties
Property NameValue
ProductVacuolar protein sorting-associate Vta1
Orig transcript idgnl|cribi|Naga_100941g3.9038.mrna
Orig protein idgnl|cribi|Naga_100941g3.9038
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:76552..77345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100941g3gene9816Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10113rna10113-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20593.1cds10082Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10113 ID=rna10113|Name=rna10113|organism=Nannochloropsis gaditana|type=mRNA|length=1375bp
TCGACGTGCGTCTGGTCACCCTCAGGCATCACTCACAATGATCACGAGAG
GGCAAAGTCTGTCTCTCGGCCGTTCATCTCCCGTCATCCGTTCTCCCTCC
GCCCTCCCGCCCTCCCTCCCAGGCCCGTGCATGCGCCCCGCCGGCCTCGT
CAGGCTGCCCTCCTCCCGACGGCCCTTCGTTTCCGTGCTTCTCGCATTGT
GCATGCTCACAAGCCTCGTGCGCGCTGCCTTCGTTCCAAGACATAGCCAA
AGAAGCACGCTAGCTACCGGTCTTCTTTTCGCCCGCTCCCCCGCCTCGGC
CGTCGACGCTCCCTGTGGGCGATTCCGCCGAGGTGAATGCTCTCTGCACG
TAGCTTGCACGACACACGCATGGCACTCACCCTCCCGATCGACCTCTTTT
CACCCCTTCCAGCCCTGCCTCGAACCAGCATGGCCGCCTCCACCCGTTCC
GATGCCCCCTCGCCCAAGGTGAAACTGGGGCTCTGCCAGATCTTGGTGGG
CGAAGATAAGGCGGAGAACATCGAGCGGGCTCGAAGAGCGGTCGAGGCAG
CCGCCCGGGCGGGCGCCCAGATCGTCTGTCTGCCAGAGTGCTGGAACGGC
CCTTACGCCACCGCCTCCTTCCCTCTCTTCGCGGAGCCCATCCCCCCCGA
GGCGGAGGGTGTGGACAAGGCGCGCAGCCCCTCTCTGGCCATGCTCCTCG
AGGTGGCTCGCGACTGCGGGGTCTTGCTGGTGGGGGGTTCCATCCCCGAG
GCCAGTGGCGGCAAGTTCTACAACACCTGCGTGGTGGTGCGTCCGGACGG
CCGGGTGGCAGCCCTGCACCGGAAAGTGCACCTCTTCGACATCCACGTCC
CTGGCGGCATCTCCTTCCGCGAATCCGACACCCTCTCCGCCGGCGACAGC
CTCACCCTGGTAGACACTTCCTGGGGCTTCTCCCTGGGGCTGGGCATCTG
CTATGACATCCGCTTCCCCGAGATGGCCATGGTCCTTCGGGCGCGGGGCG
CCAAGCTCCTCCTCTTCCCGGGGGCCTTCAACCTCACCACCGGGCCCGCG
CACTGGGAGCTTCTTCAGAGGGCGCGCGCCGTCGACAACCAGCTCTTCGT
GGCCGCCGTCTCCCCTGCGCGGAACCCCGCCGCCTCTTACCAAGCCTGGG
GTCATACCACCGTCGTCAACCCCTGGGGCGAGGTGATCGCCACCACCGGG
CACGAACCCGCTTTGTTGCTCGCGGACCTAGACATGGAGCTTGTGGAAAC
CACGCGGCGGAACATCCCCACGGCCCAACAGAAGCGCTTCGACCTCTACA
CTCCGTGCTCCCAGGTGCCCAAATAAGTTCCACACCACCGAAAAATAGAC
ATGGTTGCGTCTTCTGTCTTACTCC
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protein sequence of rna10113

>rna10113-protein ID=rna10113-protein|Name=rna10113|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MAASNPLATVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQ
AMLLRTPENSKELMPFLVALMDRLEEDKKSLPAQSPAEAKGVVEAFADRV
LQKADEVRAGARAGRLGVSSVTSS
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mRNA from alignment at KK037262.1:76552..77345+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10113 ID=rna10113|Name=rna10113|organism=Nannochloropsis gaditana|type=mRNA|length=794bp|location=Sequence derived from alignment at KK037262.1:76552..77345+ (Nannochloropsis gaditana)
tttgggaggaaggaccgCGCCTCTTGTCCGGCACGCAGCACGCTGACTCT
GACGCATCGACGCTACCTTTTCTCAGCATCCACATGGCAGCGTCCAACCC
GCTGGCGACCGTGCCCCCGGCGTTGAAGAAGATTACGGTCTTCATGCGGC
GCGCCGAGGAGCTGGACCGAGACACTTCGCACCCGGTGAGTCGTGAAgag
ggtggggtgggagagaCTAGTCGAGGACCCTGCGAAGAGTCGTAGGTCAC
CCGGCGGAGGCTGACTGACGCGAACACATCACTCATGCGTGATTTAGGAC
TCAAAGCTGGTGGCCTACTACTGCCGGACACATGCCATGGACCAAGCTAT
GCTCCTGCGGACGCCCGAGAACAGCAAGGAGCTGATGCCCTTCCTGGTTG
CCCTCATGGACCGcctggaagaggacaagaagagcCTGCCCGCCCAGTCG
CCGGCCGAGGCCAAGGGCGTGGTCGAGGCTTTCGCGGATCGCGTCCTCCA
GAAAGCGGACGAGGTGAGAGCCGGAGCCCGAGCCGGGCGTCTCGGCGTCT
CCTCGGTCACCTCTTCTTgaaccccctccctttcccggaCAGGACGACCA
GCTCGGGGTCTGGGACAAGGACACGGCCAAAGTCTTCTACGCCGCGGGGA
TTTTCTacgaggcgatggagcagttcaaggagctggcgggtccggaggtg
gagaggaagcgaaagTACTGCAAGTGGAAGGCCTCCGACATCTTGAACGC
GCTCAAGGAGGGCCGTACCCCCACGCAGGGCGGGGGCTTGTCCG
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Coding sequence (CDS) from alignment at KK037262.1:76552..77345+

>rna10113 ID=rna10113|Name=rna10113|organism=Nannochloropsis gaditana|type=CDS|length=750bp|location=Sequence derived from alignment at KK037262.1:76552..77345+ (Nannochloropsis gaditana)
ATGGCAGCGTCCAACCCGCTGGCGACCGTGCCCCCGGCGTTGAAGAAGAT
TACGGTCTTCATGCGGCGCGCCGAGGAGCTGGACCGAGACACTTCGCACC
CGGACTCAAAGCTGGTGGCCTACTACTGCCGGACACATGCCATGGACCAA
GCTATGCTCCTGCGGACGCCCGAGAACAGCAAGGAGCTGATGCCCTTCCT
GGTTGCCCTCATGGACCGcctggaagaggacaagaagagcCTGCCCGCCC
AGTCGCCGGCCGAGGCCAAGGGCGTGGTCGAGGCTTTCGCGGATCGCGTC
CTCCAGAAAGCGGACGAGGTGAGAGCCGGAGCCCGAGCCGGGCGTCTCGG
CGTCTCCTCGGTCACCTCTTCTTgaATGGCAGCGTCCAACCCGCTGGCGA
CCGTGCCCCCGGCGTTGAAGAAGATTACGGTCTTCATGCGGCGCGCCGAG
GAGCTGGACCGAGACACTTCGCACCCGGACTCAAAGCTGGTGGCCTACTA
CTGCCGGACACATGCCATGGACCAAGCTATGCTCCTGCGGACGCCCGAGA
ACAGCAAGGAGCTGATGCCCTTCCTGGTTGCCCTCATGGACCGcctggaa
gaggacaagaagagcCTGCCCGCCCAGTCGCCGGCCGAGGCCAAGGGCGT
GGTCGAGGCTTTCGCGGATCGCGTCCTCCAGAAAGCGGACGAGGTGAGAG
CCGGAGCCCGAGCCGGGCGTCTCGGCGTCTCCTCGGTCACCTCTTCTTga
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Synonyms
Publications