EWM20593.1, cds10082 (CDS) Nannochloropsis gaditana

Overview
NameEWM20593.1
Unique Namecds10082
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037262.1:76635..76736 +
Alignment locationKK037262.1:76849..77121 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20593.1
ProductVacuolar protein sorting-associate Vta1
Orig transcript idgnl|cribi|Naga_100941g3.9038.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:76635..76736 +
KK037262.1supercontigKK037262.1:76849..77121 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR023175VPS_Vta1/CALS_N-dom
Homology
[Close]
BLAST of EWM20593.1 vs. NCBI_GenBank
Match: gi|585100334|gb|EWM20593.1| (Vacuolar protein sorting-associate Vta1 [Nannochloropsis gaditana])

HSP 1 Score: 251.521 bits (641), Expect = 1.303e-84
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 
Query:    1 MAASNPLATVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLRTPENSKELMPFLVALMDRLEEDKKSLPAQSPAEAKGVVEAFADRVLQKADEVRAGARAGRLGVSSVTSS 124
            MAASNPLATVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLRTPENSKELMPFLVALMDRLEEDKKSLPAQSPAEAKGVVEAFADRVLQKADEVRAGARAGRLGVSSVTSS
Sbjct:    1 MAASNPLATVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLRTPENSKELMPFLVALMDRLEEDKKSLPAQSPAEAKGVVEAFADRVLQKADEVRAGARAGRLGVSSVTSS 124
[Close]
BLAST of EWM20593.1 vs. NCBI_GenBank
Match: gi|953499127|emb|CEG39439.1| (hydroxyproline-rich glycoprotein [Plasmopara halstedii])

HSP 1 Score: 106.686 bits (265), Expect = 8.895e-25
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 0 
Query:   10 VPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLRTPENSKELMPFLVALMDRLEEDKKSLPAQSPAEAKGVVEAFADRVLQKA-DEVRAG 110
            +PP  K +  F+RRAEELDRDTS P+SKL+AY+CR +AM+  + LR  + S E   +L++LMDRLE +KKSLP  +  E K + E FA  +  KA DE RAG
Sbjct:   12 IPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDVSNESTDYLLSLMDRLENEKKSLPEFTQEEGKEICEDFATEIFSKADDEDRAG 113
[Close]
BLAST of EWM20593.1 vs. NCBI_GenBank
Match: gi|301117818|ref|XP_002906637.1| (vacuolar protein sorting-associated protein VTA1 [Phytophthora infestans T30-4] >gi|262107986|gb|EEY66038.1| vacuolar protein sorting-associated protein VTA1 [Phytophthora infestans T30-4])

HSP 1 Score: 105.531 bits (262), Expect = 9.839e-25
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 0 
Query:   10 VPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLRTPENSKELMPFLVALMDRLEEDKKSLPAQSPAEAKGVVEAFADRVLQKA-DEVRAG 110
            VPP  K +  F+RRAEELDRDTS P+SKL+AY+CR +AM+  + LR  ++S E   +L++LMDRLEE+K  LP  +  E K + E FA  +  KA DE RAG
Sbjct:    8 VPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDSSNEATDYLLSLMDRLEEEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAG 109
[Close]
BLAST of EWM20593.1 vs. NCBI_GenBank
Match: gi|970616780|gb|KUF64926.1| (Vacuolar protein sorting-associated protein VTA1 [Phytophthora nicotianae])

HSP 1 Score: 103.99 bits (258), Expect = 1.010e-24
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0 
Query:    1 MAASNPLATVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLRTPENSKELMPFLVALMDRLEEDKKSLPAQSPAEAKGVVEAFADRVLQKA-DEVRAG 110
            MA   P+  VPP  K +  F+RRAEELDRDTS P+SKL+AY+CR +AM+  + LR  + S E   +L++LMDRLE++K  LP  +  E K + E FA  +  KA DE RAG
Sbjct:    1 MADPQPV-KVPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDASNEATDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAG 110
[Close]
BLAST of EWM20593.1 vs. NCBI_GenBank
Match: gi|1214710774|gb|OWZ21834.1| (Vacuolar protein sorting-associated protein [Phytophthora megakarya])

HSP 1 Score: 103.99 bits (258), Expect = 2.814e-24
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = 0 
Query:    1 MAASNPLATVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLRTPENSKELMPFLVALMDRLEEDKKSLPAQSPAEAKGVVEAFADRVLQKA-DEVRAG 110
            MA   P+  VPP  K +  F+RRAEELDRDTS P+SKL+AY+CR +AM+  + LR  ++S E   +L++LMDRLE++K  LP  +  E K + E FA  +  KA DE RAG
Sbjct:    1 MADPQPIK-VPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDSSNEATDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAG 110
[Close]
BLAST of EWM20593.1 vs. NCBI_GenBank
Match: gi|675189389|ref|XP_008903579.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|566020818|gb|ETI43729.1| hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|567963446|gb|ETK88945.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568021428|gb|ETL95517.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568051818|gb|ETM48716.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568096345|gb|ETN11096.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|570324456|gb|ETO72404.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570948283|gb|ETP13540.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570988303|gb|ETP46762.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 104.375 bits (259), Expect = 3.576e-24
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0 
Query:    1 MAASNPLATVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLRTPENSKELMPFLVALMDRLEEDKKSLPAQSPAEAKGVVEAFADRVLQKA-DEVRAG 110
            MA   P+  VPP  K +  F+RRAEELDRDTS P+SKL+AY+CR +AM+  + LR  + S E   +L++LMDRLE++K  LP  +  E K + E FA  +  KA DE RAG
Sbjct:    1 MADPQPVK-VPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDASNEATDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAG 110
[Close]
BLAST of EWM20593.1 vs. NCBI_GenBank
Match: gi|675189387|ref|XP_008903578.1| (hypothetical protein PPTG_10090 [Phytophthora parasitica INRA-310] >gi|566020817|gb|ETI43728.1| hypothetical protein F443_11346 [Phytophthora parasitica P1569] >gi|567963445|gb|ETK88944.1| hypothetical protein L915_06901 [Phytophthora parasitica] >gi|568021427|gb|ETL95516.1| hypothetical protein L917_06718 [Phytophthora parasitica] >gi|568051817|gb|ETM48715.1| hypothetical protein L914_06809 [Phytophthora parasitica] >gi|568096344|gb|ETN11095.1| hypothetical protein PPTG_10090 [Phytophthora parasitica INRA-310] >gi|570324455|gb|ETO72403.1| hypothetical protein F444_11415 [Phytophthora parasitica P1976] >gi|570948282|gb|ETP13539.1| hypothetical protein F441_11263 [Phytophthora parasitica CJ01A1] >gi|570988302|gb|ETP46761.1| hypothetical protein F442_07062 [Phytophthora parasitica P10297])

HSP 1 Score: 103.99 bits (258), Expect = 4.952e-24
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0 
Query:    1 MAASNPLATVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLRTPENSKELMPFLVALMDRLEEDKKSLPAQSPAEAKGVVEAFADRVLQKA-DEVRAG 110
            MA   P+  VPP  K +  F+RRAEELDRDTS P+SKL+AY+CR +AM+  + LR  + S E   +L++LMDRLE++K  LP  +  E K + E FA  +  KA DE RAG
Sbjct:    1 MADPQPVK-VPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDASNEATDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAG 110
[Close]
BLAST of EWM20593.1 vs. NCBI_GenBank
Match: gi|695376086|ref|XP_009515699.1| (hypothetical protein PHYSODRAFT_475194 [Phytophthora sojae] >gi|348688610|gb|EGZ28424.1| hypothetical protein PHYSODRAFT_475194 [Phytophthora sojae])

HSP 1 Score: 103.219 bits (256), Expect = 5.957e-24
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0 
Query:    1 MAASNPLATVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLRTPENSKELMPFLVALMDRLEEDKKSLPAQSPAEAKGVVEAFADRVLQKA-DEVRAG 110
            MA   P+  VPP  K +  F+RRAEELDRDTS P+SKL+AY+CR +AM+  + LR  + S E   +L++LMDRLE++K  LP  +  E K + E FA  +  KA DE RAG
Sbjct:    1 MADPQPVK-VPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDASNEATDYLLSLMDRLEDEKNKLPDFTQEEGKEICEDFAMEIFTKADDEDRAG 110
[Close]
BLAST of EWM20593.1 vs. NCBI_GenBank
Match: gi|567992140|gb|ETL42339.1| (hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 100.908 bits (250), Expect = 6.574e-23
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 0 
Query:    1 MAASNPLATVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLRTPENSKELMPFLVALMDRLEEDKKSLPAQSPAEAKGVVEAFADRVLQKA-DEVRAG 110
            MA   P+  VPP  K +  F+RRAEELDRDTS P+SKL+AY+CR +AM+  + LR  + S E   +L++LMD LE++K  LP  +  E K + E FA  +  KA DE RAG
Sbjct:    1 MADPQPVK-VPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDASNEATDYLLSLMDCLEDEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAG 110
[Close]
BLAST of EWM20593.1 vs. NCBI_GenBank
Match: gi|567992139|gb|ETL42338.1| (hypothetical protein L916_06851 [Phytophthora parasitica])

HSP 1 Score: 100.908 bits (250), Expect = 8.224e-23
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 0 
Query:    1 MAASNPLATVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLRTPENSKELMPFLVALMDRLEEDKKSLPAQSPAEAKGVVEAFADRVLQKA-DEVRAG 110
            MA   P+  VPP  K +  F+RRAEELDRDTS P+SKL+AY+CR +AM+  + LR  + S E   +L++LMD LE++K  LP  +  E K + E FA  +  KA DE RAG
Sbjct:    1 MADPQPVK-VPPTFKTLLPFIRRAEELDRDTSRPESKLIAYFCRQYAMELGIKLRENDASNEATDYLLSLMDCLEDEKNKLPDFTQEEGKEICEDFAMEIFSKADDEDRAG 110
The following BLAST results are available for this feature:
BLAST of EWM20593.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100334|gb|EWM20593.1|1.303e-84100.00Vacuolar protein sorting-associate Vta1 [Nannochlo... [more]
gi|953499127|emb|CEG39439.1|8.895e-2551.96hydroxyproline-rich glycoprotein [Plasmopara halst... [more]
gi|301117818|ref|XP_002906637.1|9.839e-2551.96vacuolar protein sorting-associated protein VTA1 [... [more]
gi|970616780|gb|KUF64926.1|1.010e-2449.55Vacuolar protein sorting-associated protein VTA1 [... [more]
gi|1214710774|gb|OWZ21834.1|2.814e-2449.55Vacuolar protein sorting-associated protein [Phyto... [more]
gi|675189389|ref|XP_008903579.1|3.576e-2449.55hypothetical protein, variant 1 [Phytophthora para... [more]
gi|675189387|ref|XP_008903578.1|4.952e-2449.55hypothetical protein PPTG_10090 [Phytophthora para... [more]
gi|695376086|ref|XP_009515699.1|5.957e-2449.55hypothetical protein PHYSODRAFT_475194 [Phytophtho... [more]
gi|567992140|gb|ETL42339.1|6.574e-2348.65hypothetical protein, variant 1 [Phytophthora para... [more]
gi|567992139|gb|ETL42338.1|8.224e-2348.65hypothetical protein L916_06851 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10113rna10113Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications