rna10111, rna10111 (mRNA) Nannochloropsis gaditana

Overview
Namerna10111
Unique Namerna10111
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1096
Alignment locationKK037262.1:73162..74456 -

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Properties
Property NameValue
Productcytosolic fe-s cluster assembly factor narfl
Orig transcript idgnl|cribi|Naga_100941g1.9037.mrna
Orig protein idgnl|cribi|Naga_100941g1.9037
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:73162..74456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100941g1gene9814Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10111rna10111-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20592.1cds10080Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10111 ID=rna10111|Name=rna10111|organism=Nannochloropsis gaditana|type=mRNA|length=1096bp
ATGGCCGAAAAACAGCGAGAGCGCCTGAGGCCCCGGCACGGGCACGTGTG
CCGGGTCGTGGAGCAGGACGCGGTGGAGTGGGCCACGGCGACGGGGGAGG
ACAGGGAGTGGGAAGGCGGGAGGGAGGGCGGGGGGAAGGGCGGGGGGAAG
GTCAGGGGCCCGGCGACGTCTACACTTGTCGTTCTCGCCTTGGAAGTTCT
GGACAATCTGCCTCACGACAAGGTCTTGTGGACGGAGGAGGGGGGAGAGT
GGCGCCTCCGCGAGTGCGTGGTGCGGGGGAACGAAAATACCGAAAATTAC
CGAGAGCACCACCGAGCCCTAGCCGACGAGCGCATCGCTCTCTTGCTGCA
GCTCCAACCGGCCTTGGCCCGTCGCATTGACCCTCGCGAGCAGGGCGTGG
ACCGGACTCTGGGAAGGTGGCAAAGGAGCCTGACGCGACTCCTGCCGGCG
AGTCTCGCGCGCACCCTGGGTGGTGACCGAGCCCGTCCATGCGCGGCCTT
CGTGCCCACGGGGATGGTTGACTTCGTGGAGGGACTCTGCACGGCCTTCC
CGCGCCGGCACCACTTCCTTTTCGCGGACTTCGACTCCCTCCCCCCCCCG
GCCTTGGAGGCCCCCGGGGGAGAAGAGGAGGAAGCCCCCGACCTGCGGGC
CCTCAACCCTCCATTAGTGACGAGTCGGGATCCGGCTACGGGGCAGCATC
GCGACCATCCCTCCTACCTCTCGCACAAGGGCAGCGCCGACATCTTTTTC
CCCGTGGACTTTGCGTTGCTCCAAGAAGTCTACCGTTTCTTCGCGAGCCG
GGCCGACCGGAAGGGTGGGGGGCAGGCCTCGGTGAGAGTGCTTAAGTCGG
CGCGATTTTTGGAGAGGTATGGGGAGGAGGGCGGTCAGGGAACCTGCACG
AGGTCGGGGTATAACCCCATGCTTGAGGACTTTCTGAACACCTGCTTCTT
CGTTGCCGAGGCCAAGGATCCCTCGGCTAGGGAGGGGCGTTCGAGAAGGG
CAACTCCACGGTCGAGACGATGATATATGTGGATAAAGGACACGAAACGA
AAGCAACCAAAGCTGTAACAAATTAAAGAAGGGTATATCACTCACT
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protein sequence of rna10111

>rna10111-protein ID=rna10111-protein|Name=rna10111|organism=Nannochloropsis gaditana|type=polypeptide|length=386bp
MASVFLGDLDDVIGPSQACVNPIFATDTSTPPSQRSAAPENEDKGRAQVT
VEAAWMDVEEAGGAVKPDLIKATGPGSAASVSLNDCLACSGCVTSAETVL
ISQQSTDQFLRILRGGRGGQTQALVVALSPQSLASLGVAFGWAAPRLPRR
LGSFFKALARRLVAPPNEPLPVHVYSTASAAPVALAEATAEFVARYRHCQ
PPPPGIALHPPPPSPSPPAWEAPPPSRALSATEDAPHPDLPLGVPAPPPR
HQALPMLVSECPGWVCYAEKTTPQVLPLLSTAKSPQQCLGTLVKAVLAPA
SGLRPGQVCVVAVMPCYDKKLEASRRDFVHAEWGEVPEVDMVLTAGEVGE
LVREYGPGEEEGCLAWGGGEGGGRRGRPTGPTKGAT
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mRNA from alignment at KK037262.1:73162..74456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10111 ID=rna10111|Name=rna10111|organism=Nannochloropsis gaditana|type=mRNA|length=1295bp|location=Sequence derived from alignment at KK037262.1:73162..74456- (Nannochloropsis gaditana)
AGGCCATGGCTAGCGTCTTCCTCGGGGATCTGGACGACGTGATCGGCCCC
TCCCAGGCCTGCGTCAACCCCATCTTCGCCACCGACACCTCCACGCCCCC
CTCCCAGCGGAGCGCCGCTCCTGAAAATGAGGACAAAGGCAGAGCCCAAG
TGACGGTGGAGGCGGCCTGGATGGACGTGGAGGAGGCGGGCGGGGCCGTG
AAACCGGACCTGATCAAAGCGACAGGCCCGGGGTCTGCGGCCTCTGTCTC
CCTGAATGACTGTCTCGCCTGCAGGTACGGCGTTCTCTCCCCTTACAGCT
CTATCGTGCCAACCTTGCCGCGACTCTCGGTGCTCCCTTTCCCTGACGCC
CTCGGCCTCCTTGCTCAATTTTCCCTTCCCCCTTTTTCCTCCTCCTCCCC
CAGCGGCTGCGTCACGTCCGCCGAGACCGTCCTCATCAGTCAGCAGAGCA
CCGACCAATTCCTCCGCATCCTGCGCGGAGGCCGCGGGGGCCAAACCCAA
GCCCTGGTGGTGGCGCTGTCCCCTCAGAGCCTGGCCTCCCTGGGCGTGGC
CTTCGGGTGGGCGGCTCCCCGGCTGCCGCGTCGTCTGGGCTCCTTCTTCA
AGGCCCTCGCTCGCCGACTGGTGGCCCCGCCGAACGAACCGCTCCCCGTC
CACGTCTACTCCACCGCCTCAGCCGCCCCCGTCGCCCTGGCCGAGGCCAC
CGCGGAATTCGTCGCCCGCTACCGGCACTGCCAGCCGCCCCCCCCGGGGA
TCGCCCTTCATCCCCCCCCACCCTCGCCCTCTCCCCCCGCCTGGGAGGCC
CCTCCCCCCTCGCGCGCGCTCTCCGCCACCGAGGACGCCCCCCACCCCGA
CCTCCCCCTCGGGGTCCCCGCCCCGCCCCCCCGGCACCAGGCCCTTCCCA
TGCTCGTCTCCGAGTGCCCGGGCTGGGTCTGCTACGCGGAGAAAACCACG
CCGCAGGTCTTGCCCCTCCTCTCCACCGCCAAGTCCCCGCAGCAGTGCTT
GGGCACGCTGGTGAAGGCGGTGCTGGCGCCTGCGTCGGGTCTGCGGCCGG
GCCAGGTCTGTGTAGTGGCGGTGATGCCCTGCTACGACAAGAAGCTCGAG
GCCTCTCGGAGGGACTTCGTGCACGCGGAGTGGGGGGAGGTGCCGGAGGT
GGATATGGTCTTGACGGCGGGGGAGGTGGGGGAGCTGGTGAGGGAGTACG
GGCCGGGGGAAGAGGAAGGATGTTTAGCGTGGGGCGGGGGGGAGGGCGGG
GGGAGGAGGGGCCGGCCAACGGGCCCAACGAAGGGGGCAACGTGA
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Coding sequence (CDS) from alignment at KK037262.1:73162..74456-

>rna10111 ID=rna10111|Name=rna10111|organism=Nannochloropsis gaditana|type=CDS|length=2322bp|location=Sequence derived from alignment at KK037262.1:73162..74456- (Nannochloropsis gaditana)
CGGCTGCGTCACGTCCGCCGAGACCGTCCTCATCAGTCAGCAGAGCACCG
ACCAATTCCTCCGCATCCTGCGCGGAGGCCGCGGGGGCCAAACCCAAGCC
CTGGTGGTGGCGCTGTCCCCTCAGAGCCTGGCCTCCCTGGGCGTGGCCTT
CGGGTGGGCGGCTCCCCGGCTGCCGCGTCGTCTGGGCTCCTTCTTCAAGG
CCCTCGCTCGCCGACTGGTGGCCCCGCCGAACGAACCGCTCCCCGTCCAC
GTCTACTCCACCGCCTCAGCCGCCCCCGTCGCCCTGGCCGAGGCCACCGC
GGAATTCGTCGCCCGCTACCGGCACTGCCAGCCGCCCCCCCCGGGGATCG
CCCTTCATCCCCCCCCACCCTCGCCCTCTCCCCCCGCCTGGGAGGCCCCT
CCCCCCTCGCGCGCGCTCTCCGCCACCGAGGACGCCCCCCACCCCGACCT
CCCCCTCGGGGTCCCCGCCCCGCCCCCCCGGCACCAGGCCCTTCCCATGC
TCGTCTCCGAGTGCCCGGGCTGGGTCTGCTACGCGGAGAAAACCACGCCG
CAGGTCTTGCCCCTCCTCTCCACCGCCAAGTCCCCGCAGCAGTGCTTGGG
CACGCTGGTGAAGGCGGTGCTGGCGCCTGCGTCGGGTCTGCGGCCGGGCC
AGGTCTGTGTAGTGGCGGTGATGCCCTGCTACGACAAGAAGCTCGAGGCC
TCTCGGAGGGACTTCGTGCACGCGGAGTGGGGGGAGGTGCCGGAGGTGGA
TATGGTCTTGACGGCGGGGGAGGTGGGGGAGCTGGTGAGGGAGTACGGGC
CGGGGGAAGAGGAAGGATGTTTAGCGTGGGGCGGGGGGGAGGGCGGGGGG
AGGAGGGGCCGGCCAACGGGCCCAACGAAGGGGGCAACGTGAATGGCTAG
CGTCTTCCTCGGGGATCTGGACGACGTGATCGGCCCCTCCCAGGCCTGCG
TCAACCCCATCTTCGCCACCGACACCTCCACGCCCCCCTCCCAGCGGAGC
GCCGCTCCTGAAAATGAGGACAAAGGCAGAGCCCAAGTGACGGTGGAGGC
GGCCTGGATGGACGTGGAGGAGGCGGGCGGGGCCGTGAAACCGGACCTGA
TCAAAGCGACAGGCCCGGGGTCTGCGGCCTCTGTCTCCCTGAATGACTGT
CTCGCCTGCAGCGGCTGCGTCACGTCCGCCGAGACCGTCCTCATCAGTCA
GCAGAGCACCGACCAATTCCTCCGCATCCTGCGCGGAGGCCGCGGGGGCC
AAACCCAAGCCCTGGTGGTGGCGCTGTCCCCTCAGAGCCTGGCCTCCCTG
GGCGTGGCCTTCGGGTGGGCGGCTCCCCGGCTGCCGCGTCGTCTGGGCTC
CTTCTTCAAGGCCCTCGCTCGCCGACTGGTGGCCCCGCCGAACGAACCGC
TCCCCGTCCACGTCTACTCCACCGCCTCAGCCGCCCCCGTCGCCCTGGCC
GAGGCCACCGCGGAATTCGTCGCCCGCTACCGGCACTGCCAGCCGCCCCC
CCCGGGGATCGCCCTTCATCCCCCCCCACCCTCGCCCTCTCCCCCCGCCT
GGGAGGCCCCTCCCCCCTCGCGCGCGCTCTCCGCCACCGAGGACGCCCCC
CACCCCGACCTCCCCCTCGGGGTCCCCGCCCCGCCCCCCCGGCACCAGGC
CCTTCCCATGCTCGTCTCCGAGTGCCCGGGCTGGGTCTGCTACGCGGAGA
AAACCACGCCGCAGGTCTTGCCCCTCCTCTCCACCGCCAAGTCCCCGCAG
CAGTGCTTGGGCACGCTGGTGAAGGCGGTGCTGGCGCCTGCGTCGGGTCT
GCGGCCGGGCCAGGTCTGTGTAGTGGCGGTGATGCCCTGCTACGACAAGA
AGCTCGAGGCCTCTCGGAGGGACTTCGTGCACGCGGAGTGGGGGGAGGTG
CCGGAGGTGGATATGGTCTTGACGGCGGGGGAGGTGGGGGAGCTGGTGAG
GGAGTACGGGCCGGGGGAAGAGGAAGGATGTTTAGCGTGGGGCGGGGGGG
AGGGCGGGGGGAGGAGGGGCCGGCCAACGGGCCCAACGAAGGGGGCAACG
TGAATGGCTAGCGTCTTCCTCGGGGATCTGGACGACGTGATCGGCCCCTC
CCAGGCCTGCGTCAACCCCATCTTCGCCACCGACACCTCCACGCCCCCCT
CCCAGCGGAGCGCCGCTCCTGAAAATGAGGACAAAGGCAGAGCCCAAGTG
ACGGTGGAGGCGGCCTGGATGGACGTGGAGGAGGCGGGCGGGGCCGTGAA
ACCGGACCTGATCAAAGCGACAGGCCCGGGGTCTGCGGCCTCTGTCTCCC
TGAATGACTGTCTCGCCTGCAG
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Synonyms
Publications