rna10107, rna10107 (mRNA) Nannochloropsis gaditana

Overview
Namerna10107
Unique Namerna10107
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1589
Alignment locationKK037262.1:64619..65270 +

Link to JBrowse

Properties
Property NameValue
Productcitrate lyase beta subunit
Orig transcript idgnl|cribi|Naga_102693g1.5505.mrna
Orig protein idgnl|cribi|Naga_102693g1.5505
GenecitE
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:64619..65270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
citEgene9810Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10107rna10107-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20597.1cds10076Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10107 ID=rna10107|Name=rna10107|organism=Nannochloropsis gaditana|type=mRNA|length=1589bp
TAGTTCTAACAGGGTTGGAGGGCCTGGAGGAAAGCGAGTGTTTTTGTGCT
GGTTTTCGCTGTCTTGACCTTCCCGCCCCTTGGTCCCGCGCGCCGTCGCA
CCATTAGTTTGGGGGACAGAGCGTTGCCTTTTGGAGACTTGACCAGGTGT
TTCTCACCATGCACCGCACCGCATTCACGGTGCTTTTCACGTCCTCCCTG
TTTTCCCACTCCGTCGGTGCCTTTCCCCTCCTTCTCCTCCGCCGCCTCGC
CCCGCCCGCCTTCCAGGCCTCGGAACCTTCCCCAGCCCCCATGCGCCTGG
CCGCCTCCCCGGAGAACGCCGCCAGACCCCTGCCGGCGGAAGCCGCCGTT
TTTGCCCAGAACATCATGGCTACCTACGGGCGGTACCCCATCACGATGGT
GAAGGGCCAGGGCGTGAGGTTGTGGGACTCTACGGGGAAGGAATACTTGG
ACTTTGTGGCGGGCATTTCCACCTGTTGCTTGGGCCACGCAAACCCGGGT
CTGACCGCGGCGGTGACGGAGCAACTGGGGAAACTGCACCACGTCTCCAA
TTTGTACTACACCGCCGAGCAGGGTCGCCTGGGGGCCTGGCTGGTGGAGC
ATTCCGTGGCGGACAAGGTGTTTTTCTGCAATTCCGGGGCCGAAGCCAAC
GAAGCCGCCATCAAACTGGCGCGGAAGCACGCGCACGAGAAGCTGGGCTT
GGGCGAGCCCGTCATCATCACGGCCAAGGCCTCCTTCCACGGGCGGACGT
TGGCCGCCATCACCGCCACGGGACAGCCGAAATACCACCGGGGCTTCGAG
CCCCTGGTCCCGGGATTTGTCTACGTCGACTACAACGACGCCGGGGCCTT
GGAGCGGACGGTGCGTCGGATCAATTTCTGGGGCCGCCTCCGCGGGTGGC
TCCCGGGGAAGAAACGGCGCGGGGTGGCGGCGATCCTGATGGAGGCCTTG
CAAGGGGAGGGCGGGATCCGACCGGGGAGCCGGAGCTTCTTCGCCAAGGC
TCGAGCGCTCTGCGACGAGACTGGGGCCCTGCTGATGGTGGACGAGGTCC
AAACGGGCGTGGGCCGGACGGGGCGGCTCTGGGGCTACGAGCAGCTGGGG
GTAGAGCCCGACGTGTTCACGTCCGCCAAGGCTCTGGGGGGGGGCGTGCC
GATCGGGGCCATGCTCTGCAAAGAGCGGGCCAACGTGTTCCAGCCTGGGG
ACCACGCCTCCACGTTCGGGGGAAACCCGCTGGCCTGCGCGGCGGGGCTG
GCGGTGACGGCCGCCTTGGAACGAGAGCATTTGGTCGAGAACGCCGCGGC
TCGCGGGGAGAGTCTGCGGGCGGGGTTAAGGAAACTTCAAGCCCAGTACC
CGGGCGTGATCGAGGACGTGCGGGGGTGGGGTCTGATCAACGGGGTGGAG
CTGAGCGAGGCGAGCGGCTTGCTCGCGGCCCCGGTGGTGCAGGCCTCCAT
CGACGAGGGCCTGCTCCTGGTGGCGGCGGGGGCTCGCGTCGTCCGCTTTG
TCCCGCCCTTGGTCGTGAGCGAGGGGGAAGTGGAGGAGGCGGTCGCCAGG
TTCGGGAAAGCCTTGGCCAAGGCGATGGCGGCGCGGTGA
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protein sequence of rna10107

>rna10107-protein ID=rna10107-protein|Name=rna10107|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
MGIWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPD
RVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDG
KSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHGEAIPCLG
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mRNA from alignment at KK037262.1:64619..65270+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10107 ID=rna10107|Name=rna10107|organism=Nannochloropsis gaditana|type=mRNA|length=652bp|location=Sequence derived from alignment at KK037262.1:64619..65270+ (Nannochloropsis gaditana)
ATGGGGATATGGGCCATGGTCGAGACGCCGGCGGCCGTCATGAACATCAA
GGAGATCGCCCGCTCCGCCAACTTCGTGCCCCGCCTGGAGGCCCTGATGA
TGGGCACGTCCGACTTGACCGTGCGTGGCCCTGCCtgtcgttccctccct
cttccccgccctccccctgttcctccctcccgccctccctcccgccctcc
ccgcgcgTTCTTgaccctctcttctccctcccgccctccctccctccctc
agaacgagctccacgccctccaccacccggaccgcgtccccctcctctac
tccctctcctcctgcctcgtcgCCGCCCGGGCCTTCAAGCTCCGCGTCAT
CGACGGCGTGCATTTGAATTTGAACGACCCCAACGGcttcgccgccgcct
gcgcccAAGGCCGGGCCCTCGGCTTCGACGGGAAGTCCTTGATCCACCCC
AAGACCGTCGCGGAGGCCAACAAAGCCTTCGGGCCCCGACCGGACGAATT
GGCGCACGCCGAAAGGGTCCTGACGGCCTGGCGGGAGGCCCAGGCGCATG
GGGAAggtagggcgggggggagggcggggggaagaaggactcTGGGCGGC
TCCAGGACGAGCGGAGAAGGCTCTGGCGAAAGCGATTCCATGCCTGGGCT
GA
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Coding sequence (CDS) from alignment at KK037262.1:64619..65270+

>rna10107 ID=rna10107|Name=rna10107|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at KK037262.1:64619..65270+ (Nannochloropsis gaditana)
ATGGGGATATGGGCCATGGTCGAGACGCCGGCGGCCGTCATGAACATCAA
GGAGATCGCCCGCTCCGCCAACTTCGTGCCCCGCCTGGAGGCCCTGATGA
TGGGCACGTCCGACTTGACCaacgagctccacgccctccaccacccggac
cgcgtccccctcctctactccctctcctcctgcctcgtcgCCGCCCGGGC
CTTCAAGCTCCGCGTCATCGACGGCGTGCATTTGAATTTGAACGACCCCA
ACGGcttcgccgccgcctgcgcccAAGGCCGGGCCCTCGGCTTCGACGGG
AAGTCCTTGATCCACCCCAAGACCGTCGCGGAGGCCAACAAAGCCTTCGG
GCCCCGACCGGACGAATTGGCGCACGCCGAAAGGGTCCTGACGGCCTGGC
GGGAGGCCCAGGCGCATGGGGAAgCGATTCCATGCCTGGGCTGAATGGGG
ATATGGGCCATGGTCGAGACGCCGGCGGCCGTCATGAACATCAAGGAGAT
CGCCCGCTCCGCCAACTTCGTGCCCCGCCTGGAGGCCCTGATGATGGGCA
CGTCCGACTTGACCaacgagctccacgccctccaccacccggaccgcgtc
cccctcctctactccctctcctcctgcctcgtcgCCGCCCGGGCCTTCAA
GCTCCGCGTCATCGACGGCGTGCATTTGAATTTGAACGACCCCAACGGct
tcgccgccgcctgcgcccAAGGCCGGGCCCTCGGCTTCGACGGGAAGTCC
TTGATCCACCCCAAGACCGTCGCGGAGGCCAACAAAGCCTTCGGGCCCCG
ACCGGACGAATTGGCGCACGCCGAAAGGGTCCTGACGGCCTGGCGGGAGG
CCCAGGCGCATGGGGAAgCGATTCCATGCCTGGGCTGAATGGGGATATGG
GCCATGGTCGAGACGCCGGCGGCCGTCATGAACATCAAGGAGATCGCCCG
CTCCGCCAACTTCGTGCCCCGCCTGGAGGCCCTGATGATGGGCACGTCCG
ACTTGACCaacgagctccacgccctccaccacccggaccgcgtccccctc
ctctactccctctcctcctgcctcgtcgCCGCCCGGGCCTTCAAGCTCCG
CGTCATCGACGGCGTGCATTTGAATTTGAACGACCCCAACGGcttcgccg
ccgcctgcgcccAAGGCCGGGCCCTCGGCTTCGACGGGAAGTCCTTGATC
CACCCCAAGACCGTCGCGGAGGCCAACAAAGCCTTCGGGCCCCGACCGGA
CGAATTGGCGCACGCCGAAAGGGTCCTGACGGCCTGGCGGGAGGCCCAGG
CGCATGGGGAAgCGATTCCATGCCTGGGCTGA
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Synonyms
Publications