EWM20597.1, cds10076 (CDS) Nannochloropsis gaditana

Overview
NameEWM20597.1
Unique Namecds10076
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037262.1:64619..64738 +
Alignment locationKK037262.1:64871..65174 +
Alignment locationKK037262.1:65251..65270 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20597.1
Productcitrate lyase beta subunit
Orig transcript idgnl|cribi|Naga_102693g1.5505.mrna
GenecitE
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:64619..64738 +
KK037262.1supercontigKK037262.1:64871..65174 +
KK037262.1supercontigKK037262.1:65251..65270 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR015813Pyrv/PenolPyrv_Kinase-like_dom
IPR005000Aldolase/citrate-lyase_domain
Homology
BLAST of EWM20597.1 vs. NCBI_GenBank
Match: gi|585100341|gb|EWM20597.1| (citrate lyase beta subunit [Nannochloropsis gaditana])

HSP 1 Score: 301.982 bits (772), Expect = 7.607e-104
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query:    1 MGIWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPDRVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDGKSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHGEAIPCLG 147
            MGIWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPDRVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDGKSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHGEAIPCLG
Sbjct:    1 MGIWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPDRVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDGKSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHGEAIPCLG 147          
BLAST of EWM20597.1 vs. NCBI_GenBank
Match: gi|764604423|ref|WP_044427587.1| (CoA ester lyase [Skermanella aerolata] >gi|763835493|gb|KJB95943.1| (3S)-malyl-CoA thiolesterase [Skermanella aerolata KACC 11604])

HSP 1 Score: 167.933 bits (424), Expect = 6.657e-49
Identity = 79/141 (56.03%), Postives = 106/141 (75.18%), Query Frame = 0
Query:    3 IWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPDRVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDGKSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHGEAI 143
            IW M+ETP A++N KEIA ++   PRL A +MGTSDL  +LHA H  DR+P++ SL  CL+AARA+ L ++DGV+L+LND  GFAA+C QG  LGFDGK+LIHPKT+A  N AFGP  DE+AH+ R++ A++ A A G+ +
Sbjct:  123 IWCMMETPLAMLNAKEIAGAS---PRLGAFVMGTSDLAKDLHAAHTRDRLPMITSLGLCLLAARAYGLAILDGVYLDLNDDEGFAASCRQGVELGFDGKTLIHPKTLAATNAAFGPSTDEVAHSRRIIDAFQAAVAEGKGV 260          
BLAST of EWM20597.1 vs. NCBI_GenBank
Match: gi|739592527|ref|WP_037450120.1| (CoA ester lyase [Skermanella stibiiresistens] >gi|587642191|gb|EWY41203.1| (3S)-malyl-CoA thiolesterase [Skermanella stibiiresistens SB22])

HSP 1 Score: 166.007 bits (419), Expect = 3.780e-48
Identity = 78/141 (55.32%), Postives = 105/141 (74.47%), Query Frame = 0
Query:    3 IWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPDRVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDGKSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHGEAI 143
            IW M+ETP A++N+KEIA +    PRL  L+MGTSDL  +LHA H  DR+P++ SL  CL+AARA+ L ++DGV+L+LND  GFAA+C QG  LGFDGK+LIHPKT+A AN AFGP  +E+A + R + A++ A A G+ +
Sbjct:  123 IWCMMETPLAMLNVKEIAGA---TPRLGGLVMGTSDLAKDLHAAHTRDRLPMITSLGLCLLAARAYGLAILDGVYLDLNDDEGFAASCRQGVELGFDGKTLIHPKTLAAANAAFGPSAEEVAQSRRFIEAFQAASAEGKGV 260          
BLAST of EWM20597.1 vs. NCBI_GenBank
Match: gi|1056027710|ref|WP_067555970.1| (CoA ester lyase [Oceanibaculum pacificum] >gi|1016462982|gb|KZD08281.1| malyl-CoA thiolesterase [Oceanibaculum pacificum])

HSP 1 Score: 162.925 bits (411), Expect = 5.597e-47
Identity = 75/143 (52.45%), Postives = 104/143 (72.73%), Query Frame = 0
Query:    1 MGIWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPDRVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDGKSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHGEAI 143
            + IW M+ETP A+++ K+IAR+    PRL   +MGTSDL  +L ALH PDR+P + SL  CL+AARA+ L ++DGV+L+L D  GFAAAC QGR +GFDGK+LIHPKT+A AN+ F P  DE+A + +++ A  EA+  G+ +
Sbjct:  121 LAIWCMMETPLAMLDAKDIARA---TPRLGGFVMGTSDLAKDLGALHTPDRLPFVTSLGLCLLAARAYGLAILDGVYLDLTDEEGFAAACRQGREMGFDGKTLIHPKTIAAANQVFAPSADEIAWSRKIIAAHAEAERQGKGV 260          
BLAST of EWM20597.1 vs. NCBI_GenBank
Match: gi|737707011|ref|WP_035675857.1| (CoA ester lyase [Azospirillum brasilense] >gi|938486291|gb|ALJ34388.1| malyl-CoA thiolesterase [Azospirillum brasilense] >gi|1159216798|gb|OPH14317.1| malyl-CoA thiolesterase [Azospirillum brasilense] >gi|1159225565|gb|OPH22582.1| malyl-CoA thiolesterase [Azospirillum brasilense])

HSP 1 Score: 162.925 bits (411), Expect = 6.009e-47
Identity = 78/141 (55.32%), Postives = 103/141 (73.05%), Query Frame = 0
Query:    3 IWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPDRVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDGKSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHGEAI 143
            IW M+ETP  ++N +EIA ++   P+L  L+MGTSDL  +LHA H  DR+P+L SL  CL+AARA+ L ++DGVHL+LND  GFA +CAQGR LGFDGK+LIHPKT+A  N AF P  +E+A A R++ A  EA A G+ +
Sbjct:  123 IWCMMETPLGMLNAREIAGAS---PKLGGLVMGTSDLAKDLHAAHTRDRLPMLTSLGLCLLAARAYGLAILDGVHLDLNDDAGFADSCAQGRELGFDGKTLIHPKTIAACNAAFAPSEEEVAQAHRIIQAHAEAVAQGKGV 260          
BLAST of EWM20597.1 vs. NCBI_GenBank
Match: gi|504007648|ref|WP_014241642.1| (CoA ester lyase [Azospirillum brasilense] >gi|356878584|emb|CCC99471.1| citrate lyase, beta subunit [Azospirillum brasilense Sp245])

HSP 1 Score: 162.155 bits (409), Expect = 8.979e-47
Identity = 77/141 (54.61%), Postives = 101/141 (71.63%), Query Frame = 0
Query:    3 IWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPDRVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDGKSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHGEAI 143
            IW M+ETP  ++N KEIA ++   P+L  L+MGTSDL  +LHA H  DR+P+L SL  CL+AARA+ L ++DGVHL+LND  GF  +C QGR LGFDGK+LIHPKT+A  N AF P  +E+A A R++ A  EA A G+ +
Sbjct:  123 IWCMMETPLGMLNTKEIAGAS---PKLGGLVMGTSDLAKDLHAAHTRDRLPMLTSLGLCLLAARAYGLAILDGVHLDLNDDAGFGESCVQGRELGFDGKTLIHPKTIAACNAAFAPSEEEVAQAHRIIQAHAEAVAQGKGV 260          
BLAST of EWM20597.1 vs. NCBI_GenBank
Match: gi|1027698484|ref|WP_063634048.1| (CoA ester lyase [Azospirillum humicireducens] >gi|1026294615|gb|ANC90954.1| malyl-CoA thiolesterase [Azospirillum humicireducens])

HSP 1 Score: 160.614 bits (405), Expect = 3.293e-46
Identity = 76/141 (53.90%), Postives = 101/141 (71.63%), Query Frame = 0
Query:    3 IWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPDRVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDGKSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHGEAI 143
            IW M+ETP  ++N KEIA ++   P +  L++GTSDL  +LHA H   R+P++ SL  CL+AARA+ L V+DGVHL+LND  GFAA+C QGR LGFDGK+LIHPKT+   N AF P  DE+AHA R++ A  EA + G+ +
Sbjct:  123 IWCMMETPLGILNAKEIAGAS---PAVGGLVLGTSDLAKDLHAAHTAQRLPMITSLGLCLLAARAYGLAVLDGVHLDLNDDEGFAASCRQGRELGFDGKTLIHPKTITACNAAFAPDADEIAHAHRIIAAHAEAASSGKGV 260          
BLAST of EWM20597.1 vs. NCBI_GenBank
Match: gi|654397656|ref|WP_027873732.1| (CoA ester lyase [Spongiibacter marinus])

HSP 1 Score: 159.458 bits (402), Expect = 1.049e-45
Identity = 80/140 (57.14%), Postives = 99/140 (70.71%), Query Frame = 0
Query:    1 MGIWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPDRVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDGKSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHG 140
            + +WAM ETP  V+ I EIA S +   RLEA++MGTSDL  EL   H PDR+ L  SLS C++AARA  L V+DGVHLNL+D  GF  AC QG  LGFDGK+LIHPK +A AN+AFGP   +LA A+++  AW EA+A G
Sbjct:  119 LKLWAMAETPRGVLAIDEIAGSHS---RLEAIVMGTSDLAKELRVPHTPDRLGLQASLSQCVLAARAHGLDVLDGVHLNLDDEAGFVQACEQGVQLGFDGKTLIHPKQIAAANEAFGPSDQQLAQAKKIHQAWVEAEAQG 255          
BLAST of EWM20597.1 vs. NCBI_GenBank
Match: gi|653035848|ref|WP_027287536.1| (CoA ester lyase [Rhodovibrio salinarum])

HSP 1 Score: 159.073 bits (401), Expect = 1.819e-45
Identity = 76/146 (52.05%), Postives = 101/146 (69.18%), Query Frame = 0
Query:    1 MGIWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPDRVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDGKSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHGEAIPCL 146
            M IW M+ETP  V+N +EIA +++   RL   +MGTSDL  +LHA H  DR P+L +LS C++AARA+   ++DGVHL+LND  G  A C QGRALG DGK+LIHPKTV  AN+ F P  +++A+A R++ A  EAQ  GE +  L
Sbjct:  123 MAIWTMIETPKGVLNAQEIAAASD---RLAVFVMGTSDLVKDLHAEHTNDRQPVLSALSWCVLAARAYGRAIVDGVHLDLNDDEGLEAHCRQGRALGMDGKTLIHPKTVETANRVFAPSEEQIAYARRIIEAHAEAQRRGEGVAVL 265          
BLAST of EWM20597.1 vs. NCBI_GenBank
Match: gi|504013115|ref|WP_014247109.1| (CoA ester lyase [Azospirillum lipoferum] >gi|357423219|emb|CBS86065.1| citryl-CoA lyase [Azospirillum lipoferum 4B])

HSP 1 Score: 158.688 bits (400), Expect = 2.515e-45
Identity = 80/141 (56.74%), Postives = 103/141 (73.05%), Query Frame = 0
Query:    3 IWAMVETPAAVMNIKEIARSANFVPRLEALMMGTSDLTNELHALHHPDRVPLLYSLSSCLVAARAFKLRVIDGVHLNLNDPNGFAAACAQGRALGFDGKSLIHPKTVAEANKAFGPRPDELAHAERVLTAWREAQAHGEAI 143
            IW M+ETP  V+N KEIA ++   P + AL++GTSDL  +LHA H   R+P++ SL  CL+AARA+ L V+DGVHL+LND  GFAA+C QGR LGFDGK+LIHPKT+A  N AF P  DE+AHA R++ A  EA A G+ +
Sbjct:  123 IWCMMETPLGVLNAKEIAGAS---PAVGALVLGTSDLAKDLHAAHTAQRLPMITSLGLCLLAARAYGLAVLDGVHLDLNDDEGFAASCRQGRELGFDGKTLIHPKTIAACNAAFAPDADEIAHAHRIIAAHAEAAASGKGV 260          
The following BLAST results are available for this feature:
BLAST of EWM20597.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100341|gb|EWM20597.1|7.607e-104100.00citrate lyase beta subunit [Nannochloropsis gadita... [more]
gi|764604423|ref|WP_044427587.1|6.657e-4956.03CoA ester lyase [Skermanella aerolata] >gi|7638354... [more]
gi|739592527|ref|WP_037450120.1|3.780e-4855.32CoA ester lyase [Skermanella stibiiresistens] >gi|... [more]
gi|1056027710|ref|WP_067555970.1|5.597e-4752.45CoA ester lyase [Oceanibaculum pacificum] >gi|1016... [more]
gi|737707011|ref|WP_035675857.1|6.009e-4755.32CoA ester lyase [Azospirillum brasilense] >gi|9384... [more]
gi|504007648|ref|WP_014241642.1|8.979e-4754.61CoA ester lyase [Azospirillum brasilense] >gi|3568... [more]
gi|1027698484|ref|WP_063634048.1|3.293e-4653.90CoA ester lyase [Azospirillum humicireducens] >gi|... [more]
gi|654397656|ref|WP_027873732.1|1.049e-4557.14CoA ester lyase [Spongiibacter marinus][more]
gi|653035848|ref|WP_027287536.1|1.819e-4552.05CoA ester lyase [Rhodovibrio salinarum][more]
gi|504013115|ref|WP_014247109.1|2.515e-4556.74CoA ester lyase [Azospirillum lipoferum] >gi|35742... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10107rna10107Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications