rna10103, rna10103 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10103
Unique Name	rna10103
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	687
Alignment location	KK037262.1:51857..52674 -

Link to JBrowse

Properties


Property Name	Value
Product	biotin synthase
Orig transcript id	gnl\|cribi\|Naga_101288g2.7670.mrna
Orig protein id	gnl\|cribi\|Naga_101288g2.7670
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037262.1	supercontig	KK037262.1:51857..52674 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101288g2	gene9806	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20601.1	cds10072	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10103	rna10103-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037262.1:51857..52674-
coding sequence from alignment at KK037262.1:51857..52674-

mRNA sequence

>rna10103 ID=rna10103|Name=rna10103|organism=Nannochloropsis gaditana|type=mRNA|length=687bp
GGAGGTCGAGCGAGGCTTAACCCCGCCCTCTCTCCCTCCCACTCCGCAAA
AATAAGCACTCTCACCCCACGCCACGACCCCACACGCGCATTATTCCCAA
GCCAGCGATCGCCGTGTCTGCCAACGACGGGGATCTGCCGGTGATAGCGT
CCTTTGAAGGTCGTGTTGGTTGGGTTGTCGAAAAGTGGTGGTCTTTCCCA
CAGCGAGATGGGGCGTGAACGCGACCTCCTTCCCTCCCTCCCTCCCGCCT
TCTCCCTCCTCCTCCTCCTTGCCCTCCTACCATCCGCCCACCTTTTCGTT
TTGCCTTCGGCATCAGGTGCGTGTGCTGGTGGCGCACTACGTCGGCGTGC
CCGCCGTTTTCATTTTTCCCTCCCCCCTCCTCCCCGAACCTCCTCCCTCC
TTCTTCCTCCCTCCCCCTCCTCCCTCCTTCTTCCTCCCTCCCCCTCCTCC
CTCCTTCTTCCTCCCTTCCCCTCCTCCCTCCTTCCCCGCGTCTCCTACCC
TCTTCCTTCGTCCGCAAGCATCGCCCTCTTTCTTCCCCTCCCCTCCCGCC
CTTCTCCTCCTCTCGTTCCCTCCCTTCCTCCCATCCCTCCCTCTTTCCCT
CCCTCCCTCTCTCCCTCCCTACCCTTCCTCCCTCTCTCCCTCCCTACCCT
CCCTCCCTCCTCCTCTCCCTCCTCCCAGGCCTTCTGA

protein sequence of rna10103

>rna10103-protein ID=rna10103-protein|Name=rna10103|organism=Nannochloropsis gaditana|type=polypeptide|length=203bp
TTPPFLPSSLPPSLPPSLPPRSYQDRLDTLSAVRDAGLHVCSGGILGLGE
AAADRIGLLHTLATLPQHPESVPINALVAVEGTRLESNRSPSVFDMGRMI
ATARVVMPRTMVRLSAGRLSFSAGEQALLFFAGANSIFNGDVLLTTPNPA
FTADAALFDTLGLVGKKAHVPAKETPYPVEREGGREGGREEGVVVTRSAR
QAA

mRNA from alignment at KK037262.1:51857..52674-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10103 ID=rna10103|Name=rna10103|organism=Nannochloropsis gaditana|type=mRNA|length=818bp|location=Sequence derived from alignment at KK037262.1:51857..52674- (Nannochloropsis gaditana)
ACGACACCCCCCTTCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCCCCCAGGTCCTACCAAGACCGACTCGACACCTTAAGCGCCGTCC
GCGACGCGGGCCTGCACGTCTGCTCGGGCGGGATTTTGGGTCTGGGGGAG
GCAGCGGCGGATCGGATCGGGCTCCTCCACACCCTCGCCACCCTGCCCCA
GCACCCCGAGTCGGTGCCCATCAACGCCCTGGTGGCGGTGGAGGGAACGC
GCCTGGAATCGAACCGTAGCCCGTCGGTCTTTGATATGGGCCGGATGATT
GCCACGGCCCGGGTGGTGATGCCTAGGACGATGGTGCGGCTTTCGGCGGG
CCGCTTGTCCTTCTCTGCGGGGGAGCAGGCCTTGTTGTTCTTCGCGGGCG
CCAATTCGATTTTCAACGGGGATGTGCTCCTGACCACGCCGAATCCCGCC
TTTACCGCCGATGCCGCTTTGTTCGATACCCTGGGCTTGGTGGGGAAGAA
AGCGCACGTGCCGGCCAAGGAGACGCCCTACCCCGTGGAGAGGGAGGGAG
GGAGGGAGGGCGGGAGGGAGGAAGGGGTGGTGGTGACGAGGAGTGCGAGG
CAGGCGGCCTAAGGGTGGGGTCCTGTGTGGTTGTCAGAGTCTTGGGTGTG
TGGATGTGCGTCGATGGGGTGGGACGGAGGAGGGGGGGCAGGAGGGAGGA
AAGGAGGAAGGGAGGGAGGGCGATTCAGGGGTGGTGTGGTAGGACCTGGC
GCATGGGGGAGGGGAACGGAGCACGAGCAAGAAGAAAACACGGACAGAGG
GAGCGAGCCCGCCTCCCC

Coding sequence (CDS) from alignment at KK037262.1:51857..52674-

>rna10103 ID=rna10103|Name=rna10103|organism=Nannochloropsis gaditana|type=CDS|length=612bp|location=Sequence derived from alignment at KK037262.1:51857..52674- (Nannochloropsis gaditana)
ACGACACCCCCCTTCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCCCCCAGGTCCTACCAAGACCGACTCGACACCTTAAGCGCCGTCC
GCGACGCGGGCCTGCACGTCTGCTCGGGCGGGATTTTGGGTCTGGGGGAG
GCAGCGGCGGATCGGATCGGGCTCCTCCACACCCTCGCCACCCTGCCCCA
GCACCCCGAGTCGGTGCCCATCAACGCCCTGGTGGCGGTGGAGGGAACGC
GCCTGGAATCGAACCGTAGCCCGTCGGTCTTTGATATGGGCCGGATGATT
GCCACGGCCCGGGTGGTGATGCCTAGGACGATGGTGCGGCTTTCGGCGGG
CCGCTTGTCCTTCTCTGCGGGGGAGCAGGCCTTGTTGTTCTTCGCGGGCG
CCAATTCGATTTTCAACGGGGATGTGCTCCTGACCACGCCGAATCCCGCC
TTTACCGCCGATGCCGCTTTGTTCGATACCCTGGGCTTGGTGGGGAAGAA
AGCGCACGTGCCGGCCAAGGAGACGCCCTACCCCGTGGAGAGGGAGGGAG
GGAGGGAGGGCGGGAGGGAGGAAGGGGTGGTGGTGACGAGGAGTGCGAGG
CAGGCGGCCTAA

Synonyms

Publications