EWM20601.1, cds10072 (CDS) Nannochloropsis gaditana

Overview
NameEWM20601.1
Unique Namecds10072
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037262.1:52063..52674 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20601.1
Productbiotin synthase
Partialtrue
Orig transcript idgnl|cribi|Naga_101288g2.7670.mrna
GbkeyCDS
End range.
End range52674
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:52063..52674 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0016740transferase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR010722BATS_dom
Homology
BLAST of EWM20601.1 vs. NCBI_GenBank
Match: gi|585100353|gb|EWM20601.1| (biotin synthase, partial [Nannochloropsis gaditana])

HSP 1 Score: 403.29 bits (1035), Expect = 4.840e-142
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
Query:    1 TTPPFLPSSLPPSLPPSLPPRSYQDRLDTLSAVRDAGLHVCSGGILGLGEAAADRIGLLHTLATLPQHPESVPINALVAVEGTRLESNRSPSVFDMGRMIATARVVMPRTMVRLSAGRLSFSAGEQALLFFAGANSIFNGDVLLTTPNPAFTADAALFDTLGLVGKKAHVPAKETPYPVEREGGREGGREEGVVVTRSARQAA 203
            TTPPFLPSSLPPSLPPSLPPRSYQDRLDTLSAVRDAGLHVCSGGILGLGEAAADRIGLLHTLATLPQHPESVPINALVAVEGTRLESNRSPSVFDMGRMIATARVVMPRTMVRLSAGRLSFSAGEQALLFFAGANSIFNGDVLLTTPNPAFTADAALFDTLGLVGKKAHVPAKETPYPVEREGGREGGREEGVVVTRSARQAA
Sbjct:    1 TTPPFLPSSLPPSLPPSLPPRSYQDRLDTLSAVRDAGLHVCSGGILGLGEAAADRIGLLHTLATLPQHPESVPINALVAVEGTRLESNRSPSVFDMGRMIATARVVMPRTMVRLSAGRLSFSAGEQALLFFAGANSIFNGDVLLTTPNPAFTADAALFDTLGLVGKKAHVPAKETPYPVEREGGREGGREEGVVVTRSARQAA 203          
BLAST of EWM20601.1 vs. NCBI_GenBank
Match: gi|673038720|ref|XP_008873321.1| (biotin synthase [Aphanomyces invadans] >gi|574470751|gb|ETV97760.1| biotin synthase [Aphanomyces invadans])

HSP 1 Score: 224.172 bits (570), Expect = 5.392e-69
Identity = 110/168 (65.48%), Postives = 129/168 (76.79%), Query Frame = 0
Query:   15 PPSLPPRSYQDRLDTLSAVRDAGLHVCSGGILGLGEAAADRIGLLHTLATLPQHPESVPINALVAVEGTRLESNRSPSV--FDMGRMIATARVVMPRTMVRLSAGRLSFSAGEQALLFFAGANSIFNGDVLLTTPNPAFTADAALFDTLGLVGKKAHVPAKETPYPVE 180
            P  +  R+Y DRL+T++ VR AG+ VC GGILG+GE   DRI LLHTLAT+ +HPESVP+NALV+V GT L S   P V  FDM R IATAR++MP+TMVRLSAGR+SFS  EQ LLF AGANSIFNGD LLTT NPAF  D ALF  LGLVGK +HV +K+TPY V+
Sbjct:  194 PNVISTRTYDDRLNTIANVRKAGISVCCGGILGIGEKEHDRIALLHTLATMEEHPESVPVNALVSVAGTPLASEELPPVTAFDMARAIATARILMPKTMVRLSAGRMSFSDAEQGLLFMAGANSIFNGDTLLTTANPAFEKDNALFADLGLVGKPSHVASKKTPYVVK 361          
BLAST of EWM20601.1 vs. NCBI_GenBank
Match: gi|299115741|emb|CBN74306.1| (biotin synthase [Ectocarpus siliculosus])

HSP 1 Score: 224.942 bits (572), Expect = 6.836e-69
Identity = 112/158 (70.89%), Postives = 125/158 (79.11%), Query Frame = 0
Query:   15 PPSLPPRSYQDRLDTLSAVRDAGLHVCSGGILGLGEAAADRIGLLHTLATLPQHPESVPINALVAVEGTRLESN---RSPSVFDMGRMIATARVVMPRTMVRLSAGRLSFSAGEQALLFFAGANSIFNGDVLLTTPNPAFTADAALFDTLGLVGKKAH 169
            P  +  RSY+DRL+T+S VR+AG+ VC GGILGLGE   DR+GLLHTLATL +HPESVPINALVAVEGT L       +P ++DMGRMIATARVVMPRTMVRLSAGRLSFS  EQA++F AGANSIF GD LLTT NP F AD ALF  LGL GK AH
Sbjct:  217 PSVITTRSYEDRLETISNVREAGISVCCGGILGLGEEENDRVGLLHTLATLEEHPESVPINALVAVEGTPLADEGKADTPDIWDMGRMIATARVVMPRTMVRLSAGRLSFSEAEQAMMFMAGANSIFTGDRLLTTSNPEFDADKALFAKLGLNGKPAH 374          
BLAST of EWM20601.1 vs. NCBI_GenBank
Match: gi|813134492|ref|XP_012198171.1| (hypothetical protein SPRG_04175 [Saprolegnia parasitica CBS 223.65] >gi|641537124|gb|KDO30987.1| hypothetical protein SPRG_04175 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 223.402 bits (568), Expect = 7.240e-69
Identity = 106/168 (63.10%), Postives = 131/168 (77.98%), Query Frame = 0
Query:   15 PPSLPPRSYQDRLDTLSAVRDAGLHVCSGGILGLGEAAADRIGLLHTLATLPQHPESVPINALVAVEGTRL-ESN-RSPSVFDMGRMIATARVVMPRTMVRLSAGRLSFSAGEQALLFFAGANSIFNGDVLLTTPNPAFTADAALFDTLGLVGKKAHVPAKETPYPVE 180
            P  +  R+Y DRL+T++ VR AG+ VC GGILG+GE   DR+GLLHTLAT+ +HPESVP+NALV+V+GT L ++N ++ + FDM R IATAR++MP+TMVRLSAGR+SFS  EQ  LF AGANSIFNGD LLTT NPAF  D  LF  LGLVGKK+H   K+TPY V+
Sbjct:  188 PNVITTRTYDDRLNTIANVRKAGISVCCGGILGIGEKDDDRVGLLHTLATMEEHPESVPVNALVSVQGTPLADANLKAVTAFDMARAIATARILMPKTMVRLSAGRMSFSDAEQGFLFMAGANSIFNGDTLLTTSNPAFEKDNQLFTDLGLVGKKSHTANKKTPYVVK 355          
BLAST of EWM20601.1 vs. NCBI_GenBank
Match: gi|669140382|ref|XP_008605759.1| (biotin synthetase [Saprolegnia diclina VS20] >gi|530742673|gb|EQC40915.1| biotin synthetase [Saprolegnia diclina VS20])

HSP 1 Score: 223.402 bits (568), Expect = 9.976e-69
Identity = 106/168 (63.10%), Postives = 131/168 (77.98%), Query Frame = 0
Query:   15 PPSLPPRSYQDRLDTLSAVRDAGLHVCSGGILGLGEAAADRIGLLHTLATLPQHPESVPINALVAVEGTRL-ESN-RSPSVFDMGRMIATARVVMPRTMVRLSAGRLSFSAGEQALLFFAGANSIFNGDVLLTTPNPAFTADAALFDTLGLVGKKAHVPAKETPYPVE 180
            P  +  R+Y DRL+T++ VR AG+ VC GGILG+GE   DR+GLLHTLAT+ +HPESVP+NALV+V+GT L ++N ++ + FDM R IATAR++MP+TMVRLSAGR+SFS  EQ  LF AGANSIFNGD LLTT NPAF  D  LF  LGLVGKK+H   K+TPY V+
Sbjct:  188 PNVITTRTYDDRLNTIANVRKAGISVCCGGILGIGEKDDDRVGLLHTLATMEEHPESVPVNALVSVQGTPLADANLKAVTAFDMARAIATARILMPKTMVRLSAGRMSFSDAEQGFLFMAGANSIFNGDTLLTTANPAFEKDNQLFTDLGLVGKKSHTANKKTPYIVK 355          
BLAST of EWM20601.1 vs. NCBI_GenBank
Match: gi|1173936918|gb|OQR87792.1| (biotin synthase [Achlya hypogyna])

HSP 1 Score: 223.016 bits (567), Expect = 1.304e-68
Identity = 106/168 (63.10%), Postives = 131/168 (77.98%), Query Frame = 0
Query:   15 PPSLPPRSYQDRLDTLSAVRDAGLHVCSGGILGLGEAAADRIGLLHTLATLPQHPESVPINALVAVEGTRL-ESN-RSPSVFDMGRMIATARVVMPRTMVRLSAGRLSFSAGEQALLFFAGANSIFNGDVLLTTPNPAFTADAALFDTLGLVGKKAHVPAKETPYPVE 180
            P  +  R+Y DRL+T++ VR AG+ VC GGILG+GE   DR+GLLHTLAT+ +HPESVP+NALV+V+GT L ++N ++ + FDM R IATAR++MP+TMVRLSAGR+SFS  EQ  LF AGANSIFNGD LLTT NPAF  D  LF  LGLVGKK+H   K+TPY V+
Sbjct:  191 PNVITTRTYDDRLNTIANVRKAGISVCCGGILGIGEKDDDRVGLLHTLATMEEHPESVPVNALVSVQGTPLADANLKAVTAFDMARAIATARILMPKTMVRLSAGRMSFSDAEQGFLFMAGANSIFNGDTLLTTANPAFEKDNQLFTDLGLVGKKSHTANKKTPYIVK 358          
BLAST of EWM20601.1 vs. NCBI_GenBank
Match: gi|698793194|ref|XP_009829629.1| (biotin synthase [Aphanomyces astaci] >gi|574115196|gb|ETV80682.1| biotin synthase [Aphanomyces astaci])

HSP 1 Score: 223.016 bits (567), Expect = 1.368e-68
Identity = 109/168 (64.88%), Postives = 129/168 (76.79%), Query Frame = 0
Query:   15 PPSLPPRSYQDRLDTLSAVRDAGLHVCSGGILGLGEAAADRIGLLHTLATLPQHPESVPINALVAVEGTRLESNRSPSV--FDMGRMIATARVVMPRTMVRLSAGRLSFSAGEQALLFFAGANSIFNGDVLLTTPNPAFTADAALFDTLGLVGKKAHVPAKETPYPVE 180
            P  +  R+Y DRL+T++ VR AG+ VC GGILG+GE   DR+ LLHTLAT+ +HPESVP+NALV+V GT L S   P V  FDM R IATAR++MP+TMVRLSAGR+SFS  EQ LLF AGANSIFNGD LLTT NPAF  D ALF  LGLVGK +HV +K+TPY V+
Sbjct:  193 PNVISTRTYDDRLNTIANVRKAGISVCCGGILGIGEKEHDRVALLHTLATMEEHPESVPVNALVSVVGTPLASEDLPPVTAFDMARTIATARILMPKTMVRLSAGRMSFSDAEQGLLFMAGANSIFNGDTLLTTANPAFEKDNALFTDLGLVGKPSHVASKKTPYVVK 360          
BLAST of EWM20601.1 vs. NCBI_GenBank
Match: gi|1210519776|dbj|GAX21365.1| (biotin synthase [Fistulifera solaris])

HSP 1 Score: 223.016 bits (567), Expect = 7.763e-68
Identity = 112/168 (66.67%), Postives = 125/168 (74.40%), Query Frame = 0
Query:   11 PPSLPPSLPPRSYQDRLDTLSAVRDAGLHVCSGGILGLGEAAADRIGLLHTLATLPQHPESVPINALVAVEGTRL---------ESNRSPSVFDMGRMIATARVVMPRTMVRLSAGRLSFSAGEQALLFFAGANSIFNGDVLLTTPNPAFTADAALFDTLGLVGKKAH 169
            P   P  +  RSY+DRL T++ VRDAG+ VC GGILGLGE   DR+GLLH LATLP+HPESVPINALVAV+GT L         ++ +S  VFDM RMIATAR+VMPRTMVRLSAGRLSFS  EQ L+F AGANSIFNGD LLTT NP F AD ALF  LG  GK AH
Sbjct:  239 PEHYPNVITTRSYEDRLQTIANVRDAGISVCCGGILGLGEKETDRVGLLHVLATLPEHPESVPINALVAVQGTPLGDQQQEEDDDAMKSVDVFDMARMIATARIVMPRTMVRLSAGRLSFSDAEQFLMFQAGANSIFNGDKLLTTSNPEFDADQALFRKLGFQGKPAH 406          
BLAST of EWM20601.1 vs. NCBI_GenBank
Match: gi|224002813|ref|XP_002291078.1| (biotin synthase, BioB, partial [Thalassiosira pseudonana CCMP1335] >gi|220972854|gb|EED91185.1| biotin synthase, BioB, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 217.238 bits (552), Expect = 6.174e-67
Identity = 109/166 (65.66%), Postives = 125/166 (75.30%), Query Frame = 0
Query:   11 PPSLPPSLPPRSYQDRLDTLSAVRDAGLHVCSGGILGLGEAAADRIGLLHTLATLPQHPESVPINALVAVEGTRL------ESNRSPSV-----FDMGRMIATARVVMPRTMVRLSAGRLSFSAGEQALLFFAGANSIFNGDVLLTTPNPAFTADAALFDTLGLVG 165
            P   P  +  R+Y+DRL+T++ VR+AG+ VC GGILGLGE  ADR+GLLH LATLP+HPESVPINALVAVEGT L      E +++  +     FDM RMIATAR+VMPRTMVRLSAGRLSFS  EQ L+F AGANSIFNGD LLTT NP F  D ALFD LG VG
Sbjct:  165 PEHYPNVITTRTYEDRLETIANVREAGISVCCGGILGLGEKEADRVGLLHVLATLPEHPESVPINALVAVEGTPLGNAAADEDSKADGIADVDAFDMARMIATARIVMPRTMVRLSAGRLSFSDAEQFLMFQAGANSIFNGDKLLTTDNPEFDQDMALFDKLGFVG 330          
BLAST of EWM20601.1 vs. NCBI_GenBank
Match: gi|397631374|gb|EJK70128.1| (hypothetical protein THAOC_08542 [Thalassiosira oceanica])

HSP 1 Score: 219.164 bits (557), Expect = 2.543e-66
Identity = 112/170 (65.88%), Postives = 128/170 (75.29%), Query Frame = 0
Query:   11 PPSLPPSLPPRSYQDRLDTLSAVRDAGLHVCSGGILGLGEAAADRIGLLHTLATLPQHPESVPINALVAVEGTRL---------ESNRSPSV--FDMGRMIATARVVMPRTMVRLSAGRLSFSAGEQALLFFAGANSIFNGDVLLTTPNPAFTADAALFDTLGLVGKKAH 169
            P   P  +  R+Y+DRL+T++ VR+AG+ VC GGILGLGE   DR+GLLH LATLP+HPESVPINALVAVEGT L         +S+   +V  FDM RMIATAR+VMPRTMVRLSAGRLSFS  EQ L+F AGANSIFNGD LLTT NPAF +D ALF  LG VGK AH
Sbjct:  250 PEHYPNVITTRTYEDRLETIANVREAGISVCCGGILGLGEKETDRVGLLHVLATLPEHPESVPINALVAVEGTPLGDADADEGVDSDGIANVDSFDMARMIATARIVMPRTMVRLSAGRLSFSDAEQYLMFQAGANSIFNGDKLLTTDNPAFDSDTALFQKLGFVGKPAH 419          
The following BLAST results are available for this feature:
BLAST of EWM20601.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100353|gb|EWM20601.1|4.840e-142100.00biotin synthase, partial [Nannochloropsis gaditana... [more]
gi|673038720|ref|XP_008873321.1|5.392e-6965.48biotin synthase [Aphanomyces invadans] >gi|5744707... [more]
gi|299115741|emb|CBN74306.1|6.836e-6970.89biotin synthase [Ectocarpus siliculosus][more]
gi|813134492|ref|XP_012198171.1|7.240e-6963.10hypothetical protein SPRG_04175 [Saprolegnia paras... [more]
gi|669140382|ref|XP_008605759.1|9.976e-6963.10biotin synthetase [Saprolegnia diclina VS20] >gi|5... [more]
gi|1173936918|gb|OQR87792.1|1.304e-6863.10biotin synthase [Achlya hypogyna][more]
gi|698793194|ref|XP_009829629.1|1.368e-6864.88biotin synthase [Aphanomyces astaci] >gi|574115196... [more]
gi|1210519776|dbj|GAX21365.1|7.763e-6866.67biotin synthase [Fistulifera solaris][more]
gi|224002813|ref|XP_002291078.1|6.174e-6765.66biotin synthase, BioB, partial [Thalassiosira pseu... [more]
gi|397631374|gb|EJK70128.1|2.543e-6665.88hypothetical protein THAOC_08542 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10103rna10103Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications