rna10101, rna10101 (mRNA) Nannochloropsis gaditana

Overview
Namerna10101
Unique Namerna10101
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length834
Alignment locationKK037262.1:47797..48990 +

Link to JBrowse

Properties
Property NameValue
Productrna binding protein
Orig transcript idgnl|cribi|Naga_101497g1.4955.mrna
Orig protein idgnl|cribi|Naga_101497g1.4955
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:47797..48990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101497g1gene9804Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10101rna10101-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20603.1cds10070Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10101 ID=rna10101|Name=rna10101|organism=Nannochloropsis gaditana|type=mRNA|length=834bp
ATGTTCGTCTGCAACGTCGGGGATTCTCGGGCCATTTTGGCTCAACGGCC
CCGGGCCCCCGAGCCGGCCCCTGCTCCCCCGGACGCAACGGCCGTGACGG
CTCCCAACGGCGCCGCCGTTACCGGCCGAAACGGCGCGGAACTTCGGGTC
TTTCCCCTCTCGGAGGACCAAACCCCGTACCGCCGGGACGAGCGGGAGCG
AGTCAAGCGTTGCGGGGCCCGGGTCCTGAGCATGGACCAGATGGCCGGCT
TCGAGCCCTTGCACGAGAAGTGGGGGGACGTCCGGCTGGGGGAAGCCATC
GACGAGGCCGGAGATCCCCCACGGGTGTGGAGCAAATATGGCGAGTACCC
CGGGACGGCTTTCACGCGCTCGCTCGGCGACAGCATCGCCGAGGAACTCG
GGGTTTATGCGGTGCCGGAAATAACGGTCCGGAAAATAAGTCCGAGGGAC
CAATACGTGATGGTGGCGTCGGACGGCGTCTACGAATTCCTCACCAACAA
GCAGTGCATCCAGACGCTCCACGAGCACTCGGACCCCCTCGCGGCCACGC
AGGCCCTGGCCCGGAAAGCCTTCGATTTGTGGCTTTCCTACGAAATCCGC
TCGGACGATATCACCTTGATTTGTCTCTTCATGGACCACGTGGGGGCTGG
GAAGAAGGAAGGGGAGGGCGCGGGGGAGGAAGGGGAGGAGGAGGAGGAGG
ACCCGGCCTGGTCCTTGAAAACGGTCCGGCCGTTACGTTCGCCCCGGGGG
CGGGAAGGAGGGCGGGAGGGAAGGCGGGAGGGAGGGCGGGAGGGAGGGCG
GGCGAGGGTTGGATGGCGTCGGCGGTGGCGGTGA
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protein sequence of rna10101

>rna10101-protein ID=rna10101-protein|Name=rna10101|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MSSLRHDDEEVDFDEEGERGGGDITSSLDPEGHPPPSSSSSYPPRALKKR
KSEGQTSLHVKGRGHRSQEERGEGGRPPSFEVLGGEGGGEGGAAKSIEGW
VIMVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFTL
RKEAEAAIEGMEGEEMYGKDVRVDWAFMQEASGR
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mRNA from alignment at KK037262.1:47797..48990+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10101 ID=rna10101|Name=rna10101|organism=Nannochloropsis gaditana|type=mRNA|length=1194bp|location=Sequence derived from alignment at KK037262.1:47797..48990+ (Nannochloropsis gaditana)
CCCTCCGCGGGGCAGGTGGCCATGCGGGTGCGACGTCTGATGAGAGGCAA
AGCGTGGTGTGACGGGTGGCGTAGCTGTGGTTGGATTTTTCGGAGCcaca
aggggggagggagggggcgtcAGGGCAGTGGTGGgtggtgggaaaagaaa
aagtggTTGCCCAGAGCAAGCGACGAGTCAAATACCTGTATATCCCACGA
AAAATAGAGGGGTTGACGCGGGCGGTGATGGCGAGTGCCATGCCATGCat
cgggcgggggaggactcGTGTCGTTGATGTTGGTGTGTAATGATGCATTG
CAATATCAGGCATCATCCCTATTCATGCGGCATACGGGCAAGTTGTGTCC
GTGGTCGAGACATGCCGGGCACGCGTGGCAAGCGCCACAGCACCCTCCCA
CATCATAAAGACGTCGAAGAACGCGTGATTTTGCGAATGTGGAATGTTTC
TGCGCAGGAAGGGGGTGGTTGCGGCATAGTTGCCCGTAGTAAaagcagcc
ccccccccctttctgtcTTTCTGCTTTGtgtccctctttctttctacGCA
CTaaacttcctccctttcccccccttccctctcccgttcCCGTACCGCAG
CCACGCCGCCAGCGCACGGCGCCTCCACCCTTTGCCATGTCCTCGCTCCG
gcacgacgacgaggaagtggatttcgacgaggaaggcgagaggggcgggg
gggacatcacctcctccctcgacccggagggccatccccctccttcctcc
tcctcctcctacccgcCCCGGGCCCTGAAAAAACGCAAAAGCGAGGGCCA
GACGTCGTTGCACGTCAAAGGGCGCGGGCACCGAAGCCAAGAGgagcgcg
gggagggcgggaggccgcCCTCGTTCGAGGTcttgggaggggagggagga
ggggaagggggtgccGCCAAGTCGATCGAGGGGTGGGTGATAATGGTCAC
GGGCTTGcacgaggaggcgcaggaggacgaAGTGGTGGACCGTTTCGGGG
AGTTCGGGGAGGTCCGGAACGTGCAGATGAACCTGGACAGACGGACGGGC
TTCGTCAAAGGGTACGCCCTGGTTGAATTCACCTTaagaaaggaggcgga
ggcagcgatcgaggggatggagggggaggagatgtaCGGAAAAGACGTGC
GGGTGGACTGGGCCTTCATGCAGGAGGCATCAGGGCGATGAGGA
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Coding sequence (CDS) from alignment at KK037262.1:47797..48990+

>rna10101 ID=rna10101|Name=rna10101|organism=Nannochloropsis gaditana|type=CDS|length=555bp|location=Sequence derived from alignment at KK037262.1:47797..48990+ (Nannochloropsis gaditana)
ATGTCCTCGCTCCGgcacgacgacgaggaagtggatttcgacgaggaagg
cgagaggggcgggggggacatcacctcctccctcgacccggagggccatc
cccctccttcctcctcctcctcctacccgcCCCGGGCCCTGAAAAAACGC
AAAAGCGAGGGCCAGACGTCGTTGCACGTCAAAGGGCGCGGGCACCGAAG
CCAAGAGgagcgcggggagggcgggaggccgcCCTCGTTCGAGGTcttgg
gaggggagggaggaggggaagggggtgccGCCAAGTCGATCGAGGGGTGG
GTGATAATGGTCACGGGCTTGcacgaggaggcgcaggaggacgaAGTGGT
GGACCGTTTCGGGGAGTTCGGGGAGGTCCGGAACGTGCAGATGAACCTGG
ACAGACGGACGGGCTTCGTCAAAGGGTACGCCCTGGTTGAATTCACCTTa
agaaaggaggcggaggcagcgatcgaggggatggagggggaggagatgta
CGGAAAAGACGTGCGGGTGGACTGGGCCTTCATGCAGGAGGCATCAGGGC
GATGA
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Synonyms
Publications