EWM20603.1, cds10070 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20603.1
Unique Name	cds10070
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037262.1:48433..48987 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20603.1
Product	rna binding protein
Orig transcript id	gnl\|cribi\|Naga_101497g1.4955.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037262.1	supercontig	KK037262.1:48433..48987 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process
GO:0006396	RNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0005737	cytoplasm

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait
IPR000504	RRM_dom
IPR008111	RNA-bd_8

Homology

[Close]

BLAST of EWM20603.1 vs. NCBI_GenBank
Match: gi|585100357|gb|EWM20603.1| (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 366.311 bits (939), Expect = 3.961e-128
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0

Query:    1 MSSLRHDDEEVDFDEEGERGGGDITSSLDPEGHPPPSSSSSYPPRALKKRKSEGQTSLHVKGRGHRSQEERGEGGRPPSFEVLGGEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFTLRKEAEAAIEGMEGEEMYGKDVRVDWAFMQEASGR 184
            MSSLRHDDEEVDFDEEGERGGGDITSSLDPEGHPPPSSSSSYPPRALKKRKSEGQTSLHVKGRGHRSQEERGEGGRPPSFEVLGGEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFTLRKEAEAAIEGMEGEEMYGKDVRVDWAFMQEASGR
Sbjct:    1 MSSLRHDDEEVDFDEEGERGGGDITSSLDPEGHPPPSSSSSYPPRALKKRKSEGQTSLHVKGRGHRSQEERGEGGRPPSFEVLGGEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFTLRKEAEAAIEGMEGEEMYGKDVRVDWAFMQEASGR 184

[Close]

BLAST of EWM20603.1 vs. NCBI_GenBank
Match: gi|553190411|ref|XP_005855186.1| (rna-binding protein 8a [Nannochloropsis gaditana CCMP526] >gi|422293876|gb|EKU21176.1| rna-binding protein 8a [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 242.276 bits (617), Expect = 8.909e-80
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0

Query:    1 MSSLRHDDEEVDFDEEGERGGGDITSSLDPEGHPPPSSSSSYPPRALKKRKSEGQTSLHVKGRGHRSQEERGEGGRPPSFEVLGGEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGE 125
            MSSLRHDDEEVDFDEEGERGGGDITSSLDPEGHPPPSSSSS PPRALKKRKSEGQTSLHVKGRGHRSQEERGEGGRPPSFEVLGGEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGE
Sbjct:    1 MSSLRHDDEEVDFDEEGERGGGDITSSLDPEGHPPPSSSSSSPPRALKKRKSEGQTSLHVKGRGHRSQEERGEGGRPPSFEVLGGEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGE 125

[Close]

BLAST of EWM20603.1 vs. NCBI_GenBank
Match: gi|1183486592|gb|ORZ10320.1| (RNP containing family member [Lobosporangium transversale])

HSP 1 Score: 135.191 bits (339), Expect = 6.383e-37
Identity = 62/131 (47.33%), Postives = 94/131 (71.76%), Query Frame = 0

Query:   55 QTSLHVKGRGHRSQEERGEGGRPPSFEVLG-GEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFTLRKEAEAAIEGMEGEEMYGKDVRVDWAFMQEASGR 184
            + ++  KGRG +S ++RG+G    SFE L   +    G A KS+EGW++++TG+HEEA E+++ D+FGEFGE++N+ +NLDRRTGFVKGYAL+E+    EAEAAI+ M GE++  + +  D+AF++    R
Sbjct:   27 EITIKRKGRGFQSGDQRGDGVHGSSFEKLNSNDDNATGKAVKSVEGWIVLITGVHEEATEEDIQDKFGEFGEIQNIHLNLDRRTGFVKGYALIEYEKFSEAEAAIQAMNGEKLLDQTLTCDFAFVKPNDDR 157

[Close]

BLAST of EWM20603.1 vs. NCBI_GenBank
Match: gi|923687494|ref|XP_013655559.1| (PREDICTED: RNA-binding protein 8A-B-like [Brassica napus] >gi|674886031|emb|CDY46557.1| BnaA08g01960D [Brassica napus])

HSP 1 Score: 134.42 bits (337), Expect = 2.078e-36
Identity = 80/174 (45.98%), Postives = 111/174 (63.79%), Query Frame = 0

Query:    9 EEVDFD-EEGERGGGDI-TSSLDPE-GHPPPSSSSSYPPRALKKRKSEGQTSLHVKGRGHRSQEERGEGGRPPS--FEVLGGEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFTLRKEAEAAIEGMEGEEMYGKDVRVDWAF 177
            E VDF+ EE +    D+  S L P  GHP   S+ S        RK+        KGRG R +++     R  S  FE LG +GG   G  +SIEGW+++VTG+HEEAQED++ + FG+FGE++++ +NLDRRTGFVKGYAL+E+   +EA++AI+ M G E+  K+V VDWAF
Sbjct:    7 EAVDFEPEEDDLMDEDVGASDLSPRAGHPKLRSAISGANDESANRKT--------KGRGFREEKDSDRQRRLSSRDFESLGSDGGP--GPQRSIEGWIVLVTGVHEEAQEDDISNAFGDFGEIKSLHLNLDRRTGFVKGYALIEYEKSEEAQSAIKAMNGAELLTKNVSVDWAF 170

[Close]

BLAST of EWM20603.1 vs. NCBI_GenBank
Match: gi|720043881|ref|XP_010269705.1| (PREDICTED: RNA-binding protein 8A-B [Nelumbo nucifera])

HSP 1 Score: 134.42 bits (337), Expect = 2.179e-36
Identity = 82/177 (46.33%), Postives = 109/177 (61.58%), Query Frame = 0

Query:    7 DDEEVDFDEEGERGGGDITSSLDPEGHPPPSSSSSYPPRALKKRKSEGQTSL----HVKGRGHR--SQEERGEGGRPPSFEVLGGEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFTLRKEAEAAIEGMEGEEMYGKDVRVDWAF 177
            D E VDF+ E +    D+   +D +G     +S   P   LK   + G +SL      KGRG R  +  ER       +FE L  +GG   G  +SIEGW+I+VTG+HEEAQED++ + FGEFGE+RN+ +NLDRRTGFVKGYAL+E+   +EA+AAI  M G E+  + V VDWAF
Sbjct:    5 DVEAVDFEPEED----DL---MDEDGAVDVETSPRAPLPKLKSAITGGSSSLSGPKKTKGRGFREETDAERNSRFAANNFESLDSDGGP--GPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQAAISAMNGTELLTQIVSVDWAF 172

[Close]

BLAST of EWM20603.1 vs. NCBI_GenBank
Match: gi|672827369|gb|KFH72259.1| (26S proteasome regulatory subunit N7 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 133.65 bits (335), Expect = 2.614e-36
Identity = 61/126 (48.41%), Postives = 93/126 (73.81%), Query Frame = 0

Query:   55 QTSLHVKGRGHRSQEERGEGGRPPSFEVLG-GEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFTLRKEAEAAIEGMEGEEMYGKDVRVDWAFMQ 179
            Q ++  KGRG +S ++RG+G    +F+ LG  +    G A KSIEGW++++TG+HEEA E+++ D+FGEFGE++NV +NLDRRTG+VKGYALVE+    EA+ AI+ M GE++  + +  D+AF++
Sbjct:   27 QVAVKRKGRGFQSGDQRGDGVNSSAFDKLGSNDDSTTGTALKSIEGWIVLITGVHEEATEEDINDKFGEFGEIKNVHLNLDRRTGYVKGYALVEYASFNEAQNAIKEMNGEKLLDQTLTCDFAFVK 152

[Close]

BLAST of EWM20603.1 vs. NCBI_GenBank
Match: gi|922435085|ref|XP_013623419.1| (PREDICTED: RNA-binding protein 8A-B-like [Brassica oleracea var. oleracea])

HSP 1 Score: 134.035 bits (336), Expect = 3.609e-36
Identity = 80/174 (45.98%), Postives = 111/174 (63.79%), Query Frame = 0

Query:    9 EEVDFD-EEGERGGGDI-TSSLDPE-GHPPPSSSSSYPPRALKKRKSEGQTSLHVKGRGHRSQEERGEGGRPPS--FEVLGGEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFTLRKEAEAAIEGMEGEEMYGKDVRVDWAF 177
            E VDF+ EE +    D+  S L P  GHP   S+ S        RK+        KGRG R +++     R  S  FE LG +GG   G  +SIEGW+++VTG+HEEAQED++ + FG+FGE++++ +NLDRRTGFVKGYAL+E+   +EA++AI+ M G E+  K+V VDWAF
Sbjct:    7 EAVDFEPEEDDLMDEDVGASDLSPRAGHPRLRSAISGANDESANRKT--------KGRGFREEKDSDRQRRLSSRDFESLGSDGGP--GPQRSIEGWIVLVTGVHEEAQEDDISNAFGDFGEIKSLHLNLDRRTGFVKGYALIEYEKSEEAQSAIKAMNGAELLTKNVSVDWAF 170

[Close]

BLAST of EWM20603.1 vs. NCBI_GenBank
Match: gi|1035900510|gb|OAY30110.1| (hypothetical protein MANES_14G004400 [Manihot esculenta])

HSP 1 Score: 133.265 bits (334), Expect = 6.020e-36
Identity = 77/179 (43.02%), Postives = 108/179 (60.34%), Query Frame = 0

Query:    7 DDEEVDFDEEGERGGGDITSSLDPEGHPPPSSSSSYPPRALKKRKSEGQTSL----HVKGRGHRSQEERGEGGRPPS--FEVLGGEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFTLRKEAEAAIEGMEGEEMYGKDVRVDWAFMQ 179
            D E VDF+ E +         +D +G     +S   P   LK   + G +SL      KGRG R + +     R  S  F+ LG +GG   G  +SIEGW+I+VTG+HEEAQED++ + FG+FGE++N+ +NLDRRTGFVKGYAL+E+   +EA+ AI  M G E+  + + VDWAF+ 
Sbjct:    5 DAEAVDFEPEED-------DLMDEDGAVDVDASPRAPLPKLKSAITGGSSSLSAARKTKGRGFREEADADRQTRLASRDFDSLGSDGGP--GPQRSIEGWIILVTGVHEEAQEDDLQNAFGDFGEIKNLHLNLDRRTGFVKGYALIEYEKFEEAQNAISAMNGTELLTQIINVDWAFIN 174

[Close]

BLAST of EWM20603.1 vs. NCBI_GenBank
Match: gi|923907348|ref|XP_013723611.1| (PREDICTED: RNA-binding protein 8A-like [Brassica napus] >gi|674879149|emb|CDY52944.1| BnaC03g77820D [Brassica napus])

HSP 1 Score: 133.265 bits (334), Expect = 7.062e-36
Identity = 79/174 (45.40%), Postives = 111/174 (63.79%), Query Frame = 0

Query:    9 EEVDFD-EEGERGGGDI-TSSLDPE-GHPPPSSSSSYPPRALKKRKSEGQTSLHVKGRGHRSQEE--RGEGGRPPSFEVLGGEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFTLRKEAEAAIEGMEGEEMYGKDVRVDWAF 177
            E VDF+ EE +    D+  S L P  GHP   S+ +        RK+        KGRG R +++  R  G     FE LG +GG   G  +SIEGW+++VTG+HEEAQED++ + FG+FGE++++ +NLDRRTGFVKGYAL+E+   +EA++AI+ M G E+  K+V VDWAF
Sbjct:    7 EAVDFEPEEDDLMDEDVGASDLSPRAGHPRLRSAIAGANDESANRKT--------KGRGFREEKDSDRQRGLSSRDFESLGSDGGP--GPQRSIEGWIVLVTGVHEEAQEDDISNAFGDFGEIKSLHLNLDRRTGFVKGYALIEYEKSEEAQSAIKAMNGAELLTKNVSVDWAF 170

[Close]

BLAST of EWM20603.1 vs. NCBI_GenBank
Match: gi|685340815|ref|XP_009107179.1| (PREDICTED: RNA-binding protein 8A-B-like [Brassica rapa])

HSP 1 Score: 132.88 bits (333), Expect = 9.058e-36
Identity = 79/174 (45.40%), Postives = 111/174 (63.79%), Query Frame = 0

Query:    9 EEVDFD-EEGERGGGDI-TSSLDPE-GHPPPSSSSSYPPRALKKRKSEGQTSLHVKGRGHRSQEERGEGGRPPS--FEVLGGEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFTLRKEAEAAIEGMEGEEMYGKDVRVDWAF 177
            E VDF+ EE +    D+  S L P  GHP   S+ +        RK+        KGRG R +++     R  S  FE LG +GG   G  +SIEGW+++VTG+HEEAQED++ + FG+FGE++++ +NLDRRTGFVKGYAL+E+   +EA++AI+ M G E+  K+V VDWAF
Sbjct:    7 EAVDFEPEEDDLMDEDVGASDLSPRAGHPRLRSAIAGANDESANRKT--------KGRGFREEKDSDRQRRLSSRDFESLGSDGGP--GPQRSIEGWIVLVTGVHEEAQEDDISNAFGDFGEIKSLHLNLDRRTGFVKGYALIEYEKSEEAQSAIKAMNGAELLTKNVSVDWAF 170

The following BLAST results are available for this feature:

BLAST of EWM20603.1 vs. NCBI_GenBank

BLAST of EWM20603.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585100357\|gb\|EWM20603.1\|	3.961e-128	100.00	rna binding protein [Nannochloropsis gaditana]	[more]
gi\|553190411\|ref\|XP_005855186.1\|	8.909e-80	99.20	rna-binding protein 8a [Nannochloropsis gaditana C...	[more]
gi\|1183486592\|gb\|ORZ10320.1\|	6.383e-37	47.33	RNP containing family member [Lobosporangium trans...	[more]
gi\|923687494\|ref\|XP_013655559.1\|	2.078e-36	45.98	PREDICTED: RNA-binding protein 8A-B-like [Brassica...	[more]
gi\|720043881\|ref\|XP_010269705.1\|	2.179e-36	46.33	PREDICTED: RNA-binding protein 8A-B [Nelumbo nucif...	[more]
gi\|672827369\|gb\|KFH72259.1\|	2.614e-36	48.41	26S proteasome regulatory subunit N7 [Mortierella ...	[more]
gi\|922435085\|ref\|XP_013623419.1\|	3.609e-36	45.98	PREDICTED: RNA-binding protein 8A-B-like [Brassica...	[more]
gi\|1035900510\|gb\|OAY30110.1\|	6.020e-36	43.02	hypothetical protein MANES_14G004400 [Manihot escu...	[more]
gi\|923907348\|ref\|XP_013723611.1\|	7.062e-36	45.40	PREDICTED: RNA-binding protein 8A-like [Brassica n...	[more]
gi\|685340815\|ref\|XP_009107179.1\|	9.058e-36	45.40	PREDICTED: RNA-binding protein 8A-B-like [Brassica...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna10101	rna10101	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications