rna10100, rna10100 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10100
Unique Name	rna10100
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1013
Alignment location	KK037262.1:44283..45929 -

Link to JBrowse

Properties


Property Name	Value
Product	cgmp-dependent protein
Orig transcript id	gnl\|cribi\|Naga_101738g1.885.mrna
Orig protein id	gnl\|cribi\|Naga_101738g1.885
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037262.1	supercontig	KK037262.1:44283..45929 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101738g1	gene9803	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10100	rna10100-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20604.1	cds10069	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037262.1:44283..45929-
coding sequence from alignment at KK037262.1:44283..45929-

mRNA sequence

>rna10100 ID=rna10100|Name=rna10100|organism=Nannochloropsis gaditana|type=mRNA|length=1013bp
CCCCCCGCCCATCCGCCCTCCCTTCCCCCCGCTCTCCCACCCTCCGGCGT
CCGGGAAGCTTCCTTAAGGTACGTGGCCTGGTCGTGTCTGACCCTGCTGG
GGCAGCTGCACGAATCTCAGATTCTTTTTCGGGGATTCCACCCGGACGCG
CTCTTCCTTGATGCGCTGGGAAGACTTAAGGTGACGGACCTCCGGCACGC
CAAGGTCGGCCTGGAGAAGTCCTACACCCTCTGCGGTCCCCCTGGCTACT
GGGCGCCGGAGATGTTAACGGGCGACGGTTACGTCCAAGGGGTGGACTAT
TGGCAGTTGGGAGTCCTACTGTTTGAATTGCTAACGGGCGAGGAGCCGTT
ACGGGGCCCAACGGTCGCGGCGGTGAAGGAGGCGATCGCCGATTATGAAA
ACGCGGCCACGCTGGGGTGGCCGGGGGAGGCGGTTTGTTCGTTGGACTGT
CGGAGTTTTCTCTCGGGGTTATTGACGCCCATCCCCAAAGTCCGACTCGG
GGCCCGCTTGGGCACCGTGGAGGGAAAGTCGCACCGGTGGTTGCGGAAAG
AGGAATGGGGAGGAGGTGGGAGGGAGGGTGGGAAGGAGGTGGTGTCACCC
TTGTACCCCGTGGTGCAAGCCTGGTTGTCTCGCGTCGGGGGAAGGGAGGA
CGAGGTACAGAAAGAGGTGGACGAGGCGTGGGAGAGGGTGATGGGGAGGG
AGGGGGGCGAGGGGGAGGCGCTCAAGCGGTGTTGGTTGTAAGCTCGGGGA
GGTAGGGAAGGAGGGAATCAGGTGCCGGGGGAGGGGGAGGGGGAGGGAGG
GGTGTGGTGGTGGCGGTCACGGGACTGATGGGATGGGAAGGAGGGGGAGG
GGGAGGGAGGAGGTGCGCTTTCTTTAAGAGATGACGCGACAGAAATGGAA
GGCGTTTAAAGCTTTGAAGTCTTGATACATTGTGACGGAAGTGCTGGAAT
GAAAAGCAAGTTGGGTTAAGAAACGAAAGCCACAAGCAAGCTGTGGGACT
CCGGCCCGTGTCG

protein sequence of rna10100

>rna10100-protein ID=rna10100-protein|Name=rna10100|organism=Nannochloropsis gaditana|type=polypeptide|length=277bp
MFVCNVGDSRAILAQRPRAPEPAPAPPDATAVTAPNGAAVTGRNGAELRV
FPLSEDQTPYRRDERERVKRCGARVLSMDQMAGFEPLHEKWGDVRLGEAI
DEAGDPPRVWSKYGEYPGTAFTRSLGDSIAEELGVYAVPEITVRKISPRD
QYVMVASDGVYEFLTNKQCIQTLHEHSDPLAATQALARKAFDLWLSYEIR
SDDITLICLFMDHVGAGKKEGEGAGEEGEEEEEDPAWSLKTVRPLRSPRG
REGGREGRREGGREGGRARVGWRRRWR

mRNA from alignment at KK037262.1:44283..45929-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10100 ID=rna10100|Name=rna10100|organism=Nannochloropsis gaditana|type=mRNA|length=1647bp|location=Sequence derived from alignment at KK037262.1:44283..45929- (Nannochloropsis gaditana)
ATGTTCGTCTGCAACGTCGGGGATTCTCGGGCCATTTTGGCTCAACGGCC
CCGGGCCCCCGAGCCGGCCCCTGCTCCCCCGGACGCAACGGCCGTGACGG
CTCCCAACGGCGCCGCCGTTACCGGCCGAAACGGCGCGGAACTTCGGGTC
TTTCCCCTCTCGGAGGACCAAACCCCGTACCGCCGGGACGAGCGGGAGCG
AGTCAAGCGTTGCGGGGCCCGGGTCCTGAGCATGGACCAGATGGCCGGCT
TCGAGCCCTTGCACGAGAAGTGGGGGGACGTCCGGCTGGGGGAAGCCATC
GACGAGGCCGGAGATCCCCCACGGGTGTGGAGCAAATATGGTGAGGGCGG
GGGGGAAGGCGGGGGGGAGGGGATAGTGGTGGGGGAAGAAGGGGAGTGGC
GTCTACTGCCATGCCTGAATGCACTTTTTATTTGTTAATTTTCATTTTTG
AATTTTTTGAATTTTTTGAATTTTTTGAATTTTTTGAATTTCCCTCTGTG
TCCGCAGGCGAGTACCCCGGGACGGCTTTCACGCGCTCGCTCGGCGACAG
CATCGCCGAGGAACTCGGGGTTTATGCGGTGCCGGAAATAACGGTCCGGA
AAATAAGTCCGAGGGACCAATACGTGATGGTGGCGTCGGACGGTGAGGGC
AGGGGAGAGGGCGGGGGGGAGGGCGGGGTGGTGGTTTTCCTCAATATTCC
CTCTTCTTTCTCTTGTTTTTGTTCCTTCTTTTCTTCCTTTTCTGTTTTTC
CTCTCCATTCTTTTTCCATTTTCGCGGGGGTCCTTGTCTTTCATTTTTTT
TTTTTTACCCTTCATTAACCTCCCCTTCTCTCTTCAATTTGTTTCATTTT
CTTCCCTTTTATTTTCCATTTTCTTGCCTGGTTTATCCTTTTTTATTTTT
TTCCTCCCTTTACGGGGCCGTGCTTCCTGCCTGACGCTCGGGGCGGGCAG
GGGTTGCGTGCGGTTTATTTTCAATACATCGGGGCCTCCTTTCCCTACCT
CCTGTCCGCATAGCCAGCACGCAGATATAGATGTCGATATATACCTGTAT
ATATATATATGCAGTCCTCTCTTCCTCATTTATCTAAATATATCTAAATA
TATATATGTTCTCTTATATGCCCGTCTTCCTTTTTTTAAAAAATACATTG
GATCCACCATCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTTCCAGGCGT
CTACGAATTCCTCACCAACAAGCAGTGCATCCAGACGCTCCACGAGCACT
CGGACCCCCTCGCGGCCACGCAGGCCCTGGCCCGGAAAGCCTTCGATTTG
TGGCTTTCCTACGAAATCCGCTCGGACGATATCACCTTGATTTGTCTCTT
CATGGACCACGTGGGGGCTGGGAAGAAGGAAGGGGAGGGCGCGGGGGAGG
AAGGGGAGGAGGAGGAGGAGGACCCGGCCTGGTCCTTGAAAACGGTCCGG
CCGTTACGTTCGCCCCGGGGTAACGGTCCGGGGGGATTTAACGGCTCGGG
GACCGGGAACGGTTCCCGTTTGAAACCGGACGAGGCCGTGGCGGCGACGG
CGGTGGTCCAGGGCGGGAAGGAGGGCGGGAGGGAAGGCGGGAGGGAGGGC
GGGAGGGAGGGCGGGCGAGGGTTGGATGGCGTCGGCGGTGGCGGTGA

Coding sequence (CDS) from alignment at KK037262.1:44283..45929-

>rna10100 ID=rna10100|Name=rna10100|organism=Nannochloropsis gaditana|type=CDS|length=3336bp|location=Sequence derived from alignment at KK037262.1:44283..45929- (Nannochloropsis gaditana)
GGCGGGAAGGAGGGCGGGAGGGAAGGCGGGAGGGAGGGCGGGAGGGAGGG
CGGGCGAGGGTTGGATGGCGTCGGCGGTGGCGGTGAGCGTCTACGAATTC
CTCACCAACAAGCAGTGCATCCAGACGCTCCACGAGCACTCGGACCCCCT
CGCGGCCACGCAGGCCCTGGCCCGGAAAGCCTTCGATTTGTGGCTTTCCT
ACGAAATCCGCTCGGACGATATCACCTTGATTTGTCTCTTCATGGACCAC
GTGGGGGCTGGGAAGAAGGAAGGGGAGGGCGCGGGGGAGGAAGGGGAGGA
GGAGGAGGAGGACCCGGCCTGGTCCTTGAAAACGGTCCGGCCGTTACGTT
CGCCCCGGGGCGAGTACCCCGGGACGGCTTTCACGCGCTCGCTCGGCGAC
AGCATCGCCGAGGAACTCGGGGTTTATGCGGTGCCGGAAATAACGGTCCG
GAAAATAAGTCCGAGGGACCAATACGTGATGGTGGCGTCGGACGATGTTC
GTCTGCAACGTCGGGGATTCTCGGGCCATTTTGGCTCAACGGCCCCGGGC
CCCCGAGCCGGCCCCTGCTCCCCCGGACGCAACGGCCGTGACGGCTCCCA
ACGGCGCCGCCGTTACCGGCCGAAACGGCGCGGAACTTCGGGTCTTTCCC
CTCTCGGAGGACCAAACCCCGTACCGCCGGGACGAGCGGGAGCGAGTCAA
GCGTTGCGGGGCCCGGGTCCTGAGCATGGACCAGATGGCCGGCTTCGAGC
CCTTGCACGAGAAGTGGGGGGACGTCCGGCTGGGGGAAGCCATCGACGAG
GCCGGAGATCCCCCACGGGTGTGGAGCAAATATGGGCGGGAAGGAGGGCG
GGAGGGAAGGCGGGAGGGAGGGCGGGAGGGAGGGCGGGCGAGGGTTGGAT
GGCGTCGGCGGTGGCGGTGAGCGTCTACGAATTCCTCACCAACAAGCAGT
GCATCCAGACGCTCCACGAGCACTCGGACCCCCTCGCGGCCACGCAGGCC
CTGGCCCGGAAAGCCTTCGATTTGTGGCTTTCCTACGAAATCCGCTCGGA
CGATATCACCTTGATTTGTCTCTTCATGGACCACGTGGGGGCTGGGAAGA
AGGAAGGGGAGGGCGCGGGGGAGGAAGGGGAGGAGGAGGAGGAGGACCCG
GCCTGGTCCTTGAAAACGGTCCGGCCGTTACGTTCGCCCCGGGGCGAGTA
CCCCGGGACGGCTTTCACGCGCTCGCTCGGCGACAGCATCGCCGAGGAAC
TCGGGGTTTATGCGGTGCCGGAAATAACGGTCCGGAAAATAAGTCCGAGG
GACCAATACGTGATGGTGGCGTCGGACGATGTTCGTCTGCAACGTCGGGG
ATTCTCGGGCCATTTTGGCTCAACGGCCCCGGGCCCCCGAGCCGGCCCCT
GCTCCCCCGGACGCAACGGCCGTGACGGCTCCCAACGGCGCCGCCGTTAC
CGGCCGAAACGGCGCGGAACTTCGGGTCTTTCCCCTCTCGGAGGACCAAA
CCCCGTACCGCCGGGACGAGCGGGAGCGAGTCAAGCGTTGCGGGGCCCGG
GTCCTGAGCATGGACCAGATGGCCGGCTTCGAGCCCTTGCACGAGAAGTG
GGGGGACGTCCGGCTGGGGGAAGCCATCGACGAGGCCGGAGATCCCCCAC
GGGTGTGGAGCAAATATGGGCGGGAAGGAGGGCGGGAGGGAAGGCGGGAG
GGAGGGCGGGAGGGAGGGCGGGCGAGGGTTGGATGGCGTCGGCGGTGGCG
GTGAGCGTCTACGAATTCCTCACCAACAAGCAGTGCATCCAGACGCTCCA
CGAGCACTCGGACCCCCTCGCGGCCACGCAGGCCCTGGCCCGGAAAGCCT
TCGATTTGTGGCTTTCCTACGAAATCCGCTCGGACGATATCACCTTGATT
TGTCTCTTCATGGACCACGTGGGGGCTGGGAAGAAGGAAGGGGAGGGCGC
GGGGGAGGAAGGGGAGGAGGAGGAGGAGGACCCGGCCTGGTCCTTGAAAA
CGGTCCGGCCGTTACGTTCGCCCCGGGGCGAGTACCCCGGGACGGCTTTC
ACGCGCTCGCTCGGCGACAGCATCGCCGAGGAACTCGGGGTTTATGCGGT
GCCGGAAATAACGGTCCGGAAAATAAGTCCGAGGGACCAATACGTGATGG
TGGCGTCGGACGATGTTCGTCTGCAACGTCGGGGATTCTCGGGCCATTTT
GGCTCAACGGCCCCGGGCCCCCGAGCCGGCCCCTGCTCCCCCGGACGCAA
CGGCCGTGACGGCTCCCAACGGCGCCGCCGTTACCGGCCGAAACGGCGCG
GAACTTCGGGTCTTTCCCCTCTCGGAGGACCAAACCCCGTACCGCCGGGA
CGAGCGGGAGCGAGTCAAGCGTTGCGGGGCCCGGGTCCTGAGCATGGACC
AGATGGCCGGCTTCGAGCCCTTGCACGAGAAGTGGGGGGACGTCCGGCTG
GGGGAAGCCATCGACGAGGCCGGAGATCCCCCACGGGTGTGGAGCAAATA
TGGGCGGGAAGGAGGGCGGGAGGGAAGGCGGGAGGGAGGGCGGGAGGGAG
GGCGGGCGAGGGTTGGATGGCGTCGGCGGTGGCGGTGAGCGTCTACGAAT
TCCTCACCAACAAGCAGTGCATCCAGACGCTCCACGAGCACTCGGACCCC
CTCGCGGCCACGCAGGCCCTGGCCCGGAAAGCCTTCGATTTGTGGCTTTC
CTACGAAATCCGCTCGGACGATATCACCTTGATTTGTCTCTTCATGGACC
ACGTGGGGGCTGGGAAGAAGGAAGGGGAGGGCGCGGGGGAGGAAGGGGAG
GAGGAGGAGGAGGACCCGGCCTGGTCCTTGAAAACGGTCCGGCCGTTACG
TTCGCCCCGGGGCGAGTACCCCGGGACGGCTTTCACGCGCTCGCTCGGCG
ACAGCATCGCCGAGGAACTCGGGGTTTATGCGGTGCCGGAAATAACGGTC
CGGAAAATAAGTCCGAGGGACCAATACGTGATGGTGGCGTCGGACGATGT
TCGTCTGCAACGTCGGGGATTCTCGGGCCATTTTGGCTCAACGGCCCCGG
GCCCCCGAGCCGGCCCCTGCTCCCCCGGACGCAACGGCCGTGACGGCTCC
CAACGGCGCCGCCGTTACCGGCCGAAACGGCGCGGAACTTCGGGTCTTTC
CCCTCTCGGAGGACCAAACCCCGTACCGCCGGGACGAGCGGGAGCGAGTC
AAGCGTTGCGGGGCCCGGGTCCTGAGCATGGACCAGATGGCCGGCTTCGA
GCCCTTGCACGAGAAGTGGGGGGACGTCCGGCTGGGGGAAGCCATCGACG
AGGCCGGAGATCCCCCACGGGTGTGGAGCAAATATG

Synonyms

Publications