rna1008, rna1008 (mRNA) Nannochloropsis gaditana

Overview
Namerna1008
Unique Namerna1008
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1525
Alignment locationCM002456.1:948486..950087 +

Link to JBrowse

Properties
Property NameValue
Productchorismate mutase
Orig transcript idgnl|cribi|Naga_100112g11.5446.mrna
Orig protein idgnl|cribi|Naga_100112g11.5446
GeneCM
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:948486..950087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CMgene971Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1008rna1008-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29663.1cds1007Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1008 ID=rna1008|Name=rna1008|organism=Nannochloropsis gaditana|type=mRNA|length=1525bp
CCTGCATTCTGTGATTTGTTATGTGGCTTGTGAACCTGGCGAGTTCATCA
CGCAGACACCGACTTCACGGCTACACTTTGGAGTCGAACCGTACACGTCC
GACTTGAGTCAAGCCTTCTTCTTTCTTTTCATGTCCCCGCTTCTTTTCTT
CCATTCCTCTAGCGATTGTGTTGCGTTGAAAAAAGATGGCTGCCCGTCCC
AGGGAAATCAAGCTTGTTATTATCGGGGATTCAGGGGTTGGGAAGAGTTC
TTTAGTCCTCCGCTTCGTCACGCAAAGCTTCAAACCCTTTTCGGAGAGCA
CCATCGGAGCGAGCTTCATGAGCAAAGTCATTGAGCTGGATGGACAGACT
GTCAAAGTCCAGATTTGGGACACGGCGGGGCAGGAAAAGTACAAGTCTTT
GGCGCCCATGTACTACAGGGGGGCCGCGGCTGCCATCGTCGTCTACGATA
TAACGCGGCGTGAAAGCTTCGGCACACTCCAACGGTGGGTCTCTGAGCTA
CAGGAGAAGGGCCCTCGCGACCTACGAATCATGGTCGCCGGGAATAAGAA
GGATTTGGAAGGCGATCGGCAAGTGGCGGCGGAGGAAGCAGAGGCCTACG
CGGAGAGCATCGGGGCCCGGTACATGGAGACGTCCGCCAAGGACGACATG
GCCGTTCAGGACCTCTTCCTCTCGCTCTGTCAGCAGGTGCCCCTGGTCTC
GCCCGCGGGGGGCTCGGCGATACGGGCCGGAATTTACCTGTCTGGGCCCC
AAGCGGAAGGGAAAGCGAAGCAAGGCTCAAGGACGTGCTGTTGAATAGCG
AAGGGAAGAAACTGTAAGTTGAGGAGTGAGGAGGTGTGTACAGAATGACT
GTCGCCAACAGTCTGGAATACGGGGGCAACGGGAAGCGGTATGTAGATGA
TTTCGCACGAAAAGACCTTTCAGGCATGCATTGTGGCGGAACCGAAATAG
CACGGAAAAACGATATCGCAAAACGGCTCTTATGAAGAAGCCAGCAGGGT
CTTCGTGGGCGAGCCCCCTGATTTATTTTACTTCCCTCGACCTGCCCACT
CCGATAACACTAGGTTGCTTGCCATTTTACCAAACTATGCTCCCGAACGA
GAGAGTCTTTCGATGCCACGGTCACCTACTTTCTCCAGTCTTATGGAAAG
CGATGTCTTTCAGCCTCCGGTAGTGTCACCCGTCGCTTTCCTATCAACAG
CTTAGTCAAATCCTGTACTTCTTTTCCCATTGCTGACTGTGCAGAGTCTA
CAGTAAATTTCACACCTTTCTCACCAATCGCTAGCTGCTCGTGCCGGATA
TCCCCGCGCACGACGTCAGATCCCCACCCATCAAGGTCCATCGACATCCC
CTGCATTCCACTCAGCGACTCGTTACTGCACGAAAGCTACGAAAGCGTCG
TAGGCAGGGATGTATATCTTCACCACGCCCGCCAGCCCGAACACTGTCAT
GACAGCGAACAAGGCCAGCCACACGTACTGGGACGGGACCACGTGGTGGT
AGAGCGTTGTGATCAAGCCCTCGGA
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protein sequence of rna1008

>rna1008-protein ID=rna1008-protein|Name=rna1008|organism=Nannochloropsis gaditana|type=polypeptide|length=440bp
MPSAPGGTSLSHHKHRRPEILSQSIRISAFLKTPALLLLFMLVPLAALPP
TPAFVPTLIMESIQQRHNQQPGEQARKAPCDVITSNSLCILHSISGTKQT
RATRESSHHEDAPGSIRRLTWGAPSITHSHHEASEDGSVPSASFISTSSR
VNSPSAVSASTTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRQNQAIY
AKGILQLDPSIPDYPFLKTLSFLEYLLLETEKLHGKVRRYTSPEEHAFFP
EHLPDPILTPLQFPALLAPNTVDVNAQILHLYINEVVPAVCKEGDDEQHG
SSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSL
LTNSAVEARVLARAKLKASTYGQDIMGETEACKVEPDVIAAIYRDVIIPL
TKDVEVLYLFERVGRKPPAPLPGPASHYRLRVGEKGGERR
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mRNA from alignment at CM002456.1:948486..950087+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1008 ID=rna1008|Name=rna1008|organism=Nannochloropsis gaditana|type=mRNA|length=1602bp|location=Sequence derived from alignment at CM002456.1:948486..950087+ (Nannochloropsis gaditana)
CGATCCCGCTTTTGCCCCACAACAAGCCCACCTTCCCATCAATCTGCCAT
ACAGTAAAACAGACAATTTGGTTGCATACTTATTTGCTGGGTGGCAGATT
CACTCGTGAACTTGGCCTATCTATTTCCCCGCCAGCCATGCCCTCAGCGC
CCGGAGGTACGAGTCTTTCCCACCACAAGCACCGCAGGCCCGAGATACTC
TCACAGTCAATAAGAATTTCTGCCTTTCTCAAAACTCCCGCCCTTCTGCT
GCTGTTCATGCTGGTACCGCTGGCTGcacttcctccaacccctgCTTTTG
TGCCCACACTGATCATGGAGTCTATTCAGCAGCGCCATAACCAGCAGCCA
GGAGAGCAGGCGCGTAAAGCGCCTTGCGACGTTATTACCAGTAATTCTCT
TTGCATTTTACATTCCATCAGCGGCACAAAGCAAACACGAGCGACAAGAG
AAAGCAGCCACCACGAAGATGCGCCAGGGTCAATCAGGCGCCTGACCTGG
GGGGCTCCCTCTATAACACATTCCCATCATGAGGCCTCTGAGGATGGATC
CgttccttccgcctccttcatatctacctcctcccgggTCAATTCCCCTT
CTGCTGTCTCTGCGAGTACCACTACCGCAGACGTCATGTCCTTGGACAGC
ATTCGCAGCACCCTGATCCGGCAAGAGGACTCGATCATCTTCGCTTTGAT
CGAGCGCGCGCAATTCCGCCAAAATCAAGCAATTTATGCCAAAGGTATTT
TGCAACTCGATCCCTCCATTCCCGACTACCCCTTCCTCAagaccctctcc
ttcctcgagTACCTGCTTTTGGAGACGGAGAAGCTCCACGGCAAGGTCCG
GCGATACACGAGTCCGGAGGAGcacgccttcttcccggAGCATCTGCCCG
ACCCGATCCTGACGCCGCTCCAGTtcccggccctcctcgcGCCCAACACG
GTGGATGTAAACGCACAGATTCTCCACCTTTACATCAACGAGGTGGTGCC
CGCCGTctgcaaggagggcgacgacgagCAGCACggttcctccgtcctcg
ccgacatcaccctccttcaagcCCTCTCTCGGCGCATCCATCTGGGCAAG
TTCGTGGCAGAGACCAAAttccaggaggaagaggctaAATACCGTGCCCT
GGTCGGCGCGGACGACGTGGACGGGGTCATGTCCCTCCTGACCAActcgg
ccgtggaggcgcGCGTCCTTGCCCGGGCCAAACTCAAGGCGAGCACGTAC
GGGCAGGACATCatgggggagacggaggcctGCAAGGTGGAGCCGGACGT
GATCGCGGCCATCTACCGGGACGTGATCATCCCCCTGaccaaggacgtgg
aggtccTCTACCTCTTCGAACGGGTcgggaggaagccgcctGCGCCCTTG
CCGGGGCCCGCCTCGCATTACCGCCtgcgggtgggggagaagggggggga
aaggagatagacgcagggaaaagaggagacacAGTGATACGGCGCGAGCC
TGAGTGGAGCGTCAAGGGGGCCACAGCCTAGTAATCAAAGTACATAGCAT
ACATCTATCCCCCTCGGCCTCCCCAGTCTCCCAACGAGAGGTTGGGAGGT
AT
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Coding sequence (CDS) from alignment at CM002456.1:948486..950087+

>rna1008 ID=rna1008|Name=rna1008|organism=Nannochloropsis gaditana|type=CDS|length=1323bp|location=Sequence derived from alignment at CM002456.1:948486..950087+ (Nannochloropsis gaditana)
ATGCCCTCAGCGCCCGGAGGTACGAGTCTTTCCCACCACAAGCACCGCAG
GCCCGAGATACTCTCACAGTCAATAAGAATTTCTGCCTTTCTCAAAACTC
CCGCCCTTCTGCTGCTGTTCATGCTGGTACCGCTGGCTGcacttcctcca
acccctgCTTTTGTGCCCACACTGATCATGGAGTCTATTCAGCAGCGCCA
TAACCAGCAGCCAGGAGAGCAGGCGCGTAAAGCGCCTTGCGACGTTATTA
CCAGTAATTCTCTTTGCATTTTACATTCCATCAGCGGCACAAAGCAAACA
CGAGCGACAAGAGAAAGCAGCCACCACGAAGATGCGCCAGGGTCAATCAG
GCGCCTGACCTGGGGGGCTCCCTCTATAACACATTCCCATCATGAGGCCT
CTGAGGATGGATCCgttccttccgcctccttcatatctacctcctcccgg
gTCAATTCCCCTTCTGCTGTCTCTGCGAGTACCACTACCGCAGACGTCAT
GTCCTTGGACAGCATTCGCAGCACCCTGATCCGGCAAGAGGACTCGATCA
TCTTCGCTTTGATCGAGCGCGCGCAATTCCGCCAAAATCAAGCAATTTAT
GCCAAAGGTATTTTGCAACTCGATCCCTCCATTCCCGACTACCCCTTCCT
CAagaccctctccttcctcgagTACCTGCTTTTGGAGACGGAGAAGCTCC
ACGGCAAGGTCCGGCGATACACGAGTCCGGAGGAGcacgccttcttcccg
gAGCATCTGCCCGACCCGATCCTGACGCCGCTCCAGTtcccggccctcct
cgcGCCCAACACGGTGGATGTAAACGCACAGATTCTCCACCTTTACATCA
ACGAGGTGGTGCCCGCCGTctgcaaggagggcgacgacgagCAGCACggt
tcctccgtcctcgccgacatcaccctccttcaagcCCTCTCTCGGCGCAT
CCATCTGGGCAAGTTCGTGGCAGAGACCAAAttccaggaggaagaggcta
AATACCGTGCCCTGGTCGGCGCGGACGACGTGGACGGGGTCATGTCCCTC
CTGACCAActcggccgtggaggcgcGCGTCCTTGCCCGGGCCAAACTCAA
GGCGAGCACGTACGGGCAGGACATCatgggggagacggaggcctGCAAGG
TGGAGCCGGACGTGATCGCGGCCATCTACCGGGACGTGATCATCCCCCTG
accaaggacgtggaggtccTCTACCTCTTCGAACGGGTcgggaggaagcc
gcctGCGCCCTTGCCGGGGCCCGCCTCGCATTACCGCCtgcgggtggggg
agaaggggggggaaaggagatag
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Synonyms
Publications