EWM29663.1, cds1007 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29663.1 vs. NCBI_GenBank
Match: gi|585112237|gb|EWM29663.1| (chorismate mutase [Nannochloropsis gaditana]) HSP 1 Score: 897.501 bits (2318), Expect = 0.000e+0 Identity = 440/440 (100.00%), Postives = 440/440 (100.00%), Query Frame = 0
Query: 1 MPSAPGGTSLSHHKHRRPEILSQSIRISAFLKTPALLLLFMLVPLAALPPTPAFVPTLIMESIQQRHNQQPGEQARKAPCDVITSNSLCILHSISGTKQTRATRESSHHEDAPGSIRRLTWGAPSITHSHHEASEDGSVPSASFISTSSRVNSPSAVSASTTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRQNQAIYAKGILQLDPSIPDYPFLKTLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPDPILTPLQFPALLAPNTVDVNAQILHLYINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDIMGETEACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPPAPLPGPASHYRLRVGEKGGERR 440
MPSAPGGTSLSHHKHRRPEILSQSIRISAFLKTPALLLLFMLVPLAALPPTPAFVPTLIMESIQQRHNQQPGEQARKAPCDVITSNSLCILHSISGTKQTRATRESSHHEDAPGSIRRLTWGAPSITHSHHEASEDGSVPSASFISTSSRVNSPSAVSASTTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRQNQAIYAKGILQLDPSIPDYPFLKTLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPDPILTPLQFPALLAPNTVDVNAQILHLYINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDIMGETEACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPPAPLPGPASHYRLRVGEKGGERR
Sbjct: 1 MPSAPGGTSLSHHKHRRPEILSQSIRISAFLKTPALLLLFMLVPLAALPPTPAFVPTLIMESIQQRHNQQPGEQARKAPCDVITSNSLCILHSISGTKQTRATRESSHHEDAPGSIRRLTWGAPSITHSHHEASEDGSVPSASFISTSSRVNSPSAVSASTTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRQNQAIYAKGILQLDPSIPDYPFLKTLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPDPILTPLQFPALLAPNTVDVNAQILHLYINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDIMGETEACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPPAPLPGPASHYRLRVGEKGGERR 440
BLAST of EWM29663.1 vs. NCBI_GenBank
Match: gi|298708296|emb|CBJ48359.1| (Chorismate Mutase [Ectocarpus siliculosus]) HSP 1 Score: 293.508 bits (750), Expect = 2.656e-92 Identity = 152/268 (56.72%), Postives = 185/268 (69.03%), Query Frame = 0
Query: 168 SLDSIRSTLIRQEDSIIFALIERAQFRQNQAIYAKGILQLDPSIPDYPFLKTLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPDPILTPLQFPALLAPNTVDVNAQILHLYINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDIM-----------GETEA-----CKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPPA 419
SL+S+R +LIRQE++IIFALIER QFR N AIY +++ S + + SFLEY+L ETEKLH VRRY S EE AFFP LP+PIL PL FP LLAPN V+VN QIL Y++E+VP +C+ GDD+QHGSSV+ D+ LQALSRR+HLGKFVAE+KFQE+ Y+ L A D GV+ LLTN AVE +VL RA +KASTYG DI G+ A KV P I IYRD +IPLTKDVE+LYLF+R G P+
Sbjct: 122 SLESVRGSLIRQEETIIFALIEREQFRCNNAIYTDRTFRVNRSDAADIYGRDASFLEYMLSETEKLHATVRRYMSLEELAFFPMFLPEPILPPLDFPRLLAPNDVNVNDQILKRYVSEIVPMICEPGDDDQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSKTYQDLCRAGDARGVLELLTNKAVEEKVLKRAFMKASTYGSDINDVPVSTEDAKGGDGAAKAEQNFKVNPQFIVDIYRDTVIPLTKDVEILYLFQRTGYPCPS 389
BLAST of EWM29663.1 vs. NCBI_GenBank
Match: gi|219111571|ref|XP_002177537.1| (probable chorismate mutase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217412072|gb|EEC52000.1| probable chorismate mutase [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 271.166 bits (692), Expect = 8.133e-85 Identity = 146/287 (50.87%), Postives = 190/287 (66.20%), Query Frame = 0
Query: 163 TADVMSLDSIRSTLIRQEDSIIFALIERAQFRQNQAIYAKGILQL------DPSIPDYPFLKTLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPD---PILTPLQFPALLAPNT-----VDVNAQILHLYINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQD-----------------IMGETEACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPP 418
T DV+SLDSIRS+LIRQE++IIFALIERAQFRQN+ +Y KG S+ D+ LSF+EY+L+ TE LH VRRYTSPEE AFFPE LP L L++P L + ++ N +L Y+ ++VP+V ++GDDEQHGS+VL DI LQALSRRIH GKFVAE+KF+ + + Y+ LV A+D DGVM LLTN+ VE +V+ RAKLKA+TYG + + K++P VI ++YRD++IPLTK +EV YLF R GR+PP
Sbjct: 11 TVDVLSLDSIRSSLIRQEETIIFALIERAQFRQNEIVYRKGGFGNLGTPVGSTSVDDH----DLSFMEYMLVGTEALHCGVRRYTSPEEQAFFPERLPYGQMDALPLLEYPQELLSSVGGACDLNFNKALLQNYVEKIVPSVSQQGDDEQHGSTVLCDIAALQALSRRIHYGKFVAESKFRSDPSGYQQLVDANDADGVMKLLTNTVVEEKVIRRAKLKAATYGTEPLLSEMPPIKGADTTSIVAAAAAPGKIDPTVIESVYRDIVIPLTKVIEVAYLFRRCGREPP 293
BLAST of EWM29663.1 vs. NCBI_GenBank
Match: gi|219114109|ref|XP_002176231.1| (probable chorismate mutase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217402806|gb|EEC42784.1| probable chorismate mutase [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 269.24 bits (687), Expect = 2.561e-84 Identity = 148/278 (53.24%), Postives = 187/278 (67.27%), Query Frame = 0
Query: 163 TADVMSLDSIRSTLIRQEDSIIFALIERAQFRQNQAIYAKGILQL------DPSIPDYPFLKTLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPD---PILTPLQFPALLAPNT-----VDVNAQILHLYINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQD--------IMGETEACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPP 418
T DV+SLDSIRS+LIRQE++IIFALIERAQFRQN+ +Y KG S+ D+ LSF+EY+L+ TE LH VRRYTSPEEHAFFPE LP L L++P L + ++ N +L Y+ ++VP+V K+GDDEQHGS+VL DI LQALSRRIH GKFVAE+K++ + + Y+ LV A+D DGVM LLTN VE +V+ RAKLKA+TYG + I G V AA+YRD++IPLTK +EV YLF R GR+PP
Sbjct: 11 TVDVLSLDSIRSSLIRQEETIIFALIERAQFRQNEIVYRKGGFGNLGTPVGSTSVEDH----DLSFMEYMLVGTEALHCGVRRYTSPEEHAFFPERLPYGQMDALPLLEYPQELLSSVGGACDLNFNKALLQNYVEKIVPSVSKQGDDEQHGSTVLCDIAALQALSRRIHYGKFVAESKYRSDPSGYQQLVDANDADGVMKLLTNRVVEEKVIRRAKLKAATYGTEPLLSEMPPIKGADTTSIVA--AAAAVYRDIVIPLTKVIEVAYLFRRCGREPP 282
BLAST of EWM29663.1 vs. NCBI_GenBank
Match: gi|1072238324|gb|OEU23051.1| (chorismate mutase, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 265.003 bits (676), Expect = 1.338e-82 Identity = 148/287 (51.57%), Postives = 186/287 (64.81%), Query Frame = 0
Query: 163 TADVMSLDSIRSTLIRQEDSIIFALIERAQFRQNQAIYAKGI------LQLDPSIPDYPFLKTLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPE-HLPDPILTPLQ---------FPALLAPNTVDVNAQILHLYINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQD--------IMGE-------------TEACKVEPDVIAAIYRDVIIPLTKDVEVLYLFER 412
T++ +SLDSIR++LIRQE++IIFALIERAQFRQN A+Y KGI + D +SFLEY+L ETEKLH VRRY SPEEHAF+PE L DP T L+ + ++V+ N +L YI +VVPA+C +GDDEQHGSSVL D+ +LQALS+R+H GKFVAE+K+ + Y+ALV A+D +GVM LLTN AVE +VL RA+LKA+TYG D + GE +E KV + IYRD+IIPLTKDVEV YLF R
Sbjct: 4 TSEFLSLDSIRASLIRQEETIIFALIERAQFRQNNAVYEKGIEKERNLFSESDNESDNDKANDVSFLEYMLTETEKLHASVRRYRSPEEHAFYPEKQLVDPTDTVLKQQLEYQSGLLSDIGDASSVNFNEILLKKYIEDVVPAICAKGDDEQHGSSVLNDVAVLQALSKRVHYGKFVAESKYLGDPDAYQALVDANDAEGVMKLLTNEAVELKVLRRARLKAATYGTDPLLADLPPLYGEQKGIPSIALGDDGSEDNKVCALTVEIIYRDLIIPLTKDVEVAYLFRR 290
BLAST of EWM29663.1 vs. NCBI_GenBank
Match: gi|922854975|gb|KOO23465.1| (chorismate mutase [Chrysochromulina sp. CCMP291]) HSP 1 Score: 262.692 bits (670), Expect = 1.645e-78 Identity = 138/265 (52.08%), Postives = 180/265 (67.92%), Query Frame = 0
Query: 167 MSLDSIRSTLIRQEDSIIFALIERAQFRQNQAIYAKGILQLDPSIPDYPFL--KTLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPDPILTPLQFPALLAPNTVDVNAQILHLYINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDIMGETEACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPPA--PLPGPASH 427
+SLDSIRS LIRQED+IIFALIERAQ RQN + Y +G S Y L K S L+++LLETE+LH +VRRYTSP+EHAFFP LP P L + F +L P V++N +I+ +Y++ VVP +C GDD+QHGSSV+ADI LQA+S+R+H G +VAE+KF+ + +Y L+ A D +G+M LLTN+AVE RVL R +LKAST+GQ+I I A+YRD +IPLTK EV YL +R+ + A PG A H
Sbjct: 8 LSLDSIRSALIRQEDTIIFALIERAQHRQNASCYERG------SANSYAVLAGKGASLLDFMLLETERLHARVRRYTSPDEHAFFPHRLPAPQLPMIDFEPVLHPCIVNLNGEIMDMYLSRVVPGLCGPGDDQQHGSSVVADIAALQAISKRVHYGFYVAESKFRAQPEQYTRLIEAGDEEGIMELLTNAAVEQRVLQRVRLKASTFGQEIEAP----------IVAMYRDYVIPLTKVAEVQYLLQRLSSQQIAHHGAPGSACH 256
BLAST of EWM29663.1 vs. NCBI_GenBank
Match: gi|698793284|ref|XP_009829674.1| (chorismate mutase, variant [Aphanomyces astaci] >gi|574115241|gb|ETV80727.1| chorismate mutase, variant [Aphanomyces astaci]) HSP 1 Score: 260.766 bits (665), Expect = 2.627e-78 Identity = 137/285 (48.07%), Postives = 185/285 (64.91%), Query Frame = 0
Query: 161 TTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRQNQAIYAKGILQLDPSIPDYPFLKTL-----SFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPDPILTPLQFPALLAPNTVDVNAQILHLYINEVVPAVCKEGDDEQ-HGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDIMGET-----------EACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPPAPLPGPASHY 428
T T + LD R+ LIRQE++IIF+LIERAQF +N IY K + D + F SFLE++L ETE+LH RRYTSP+EHAFFP LPDPIL PL + ++L PNT+++N QI+ +Y+ +++P + + DD GSS ADI +LQALS+RIH GKF+AE KFQ E +Y AL+ A+D +G+M LTN AVE +V+ R + KASTYGQDI+ +T E CKV+P VIA +YR+ ++PLTK V+V YL +R+ P GP +
Sbjct: 2 TATPKKVLLDDYRNVLIRQEETIIFSLIERAQFLRNAPIYRK---RADATASLLSFKGKYNGFEGSFLEFMLSETERLHALNRRYTSPDEHAFFPSFLPDPILPPLDYQSVLIPNTININDQIMSVYLEKLLPHITHDSDDHTTFGSSANADIAVLQALSKRIHFGKFIAEAKFQAETKRYTALILANDAEGIMDALTNLAVEDKVVMRVRFKASTYGQDIVDDTTTTIHDNSNSIEHCKVDPQVIADLYRNFVMPLTKQVQVAYLLQRL-HHPSVSFVGPVGSF 282
BLAST of EWM29663.1 vs. NCBI_GenBank
Match: gi|673038810|ref|XP_008873366.1| (chorismate mutase [Aphanomyces invadans] >gi|574470796|gb|ETV97805.1| chorismate mutase [Aphanomyces invadans]) HSP 1 Score: 261.536 bits (667), Expect = 6.687e-78 Identity = 134/274 (48.91%), Postives = 181/274 (66.06%), Query Frame = 0
Query: 169 LDSIRSTLIRQEDSIIFALIERAQFRQNQAIY------AKGILQLDPSIPDYPFLKTLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPDPILTPLQFPALLAPNTVDVNAQILHLYINEVVPAVCKEGDDE-QHGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDIMGET-------EACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPPAPLPGPASHY 428
LD R+ LIRQE++IIFALIERAQF +N AIY A+ +L + SFLE++L ETE+LH RRYTSP+EHAFFP LPDPIL PL + +L PNT+++N QI+ +Y+ +++P + ++ DD +GSS AD+ +LQALS+RIH GKF+AE KFQ E +Y L+ +D +G+M LTN AVE +V+ R + KASTYGQDI G T E CKV+P VIA +YR+ ++PLTK V+V YL +R+ P GP +
Sbjct: 9 LDDYRNVLIRQEETIIFALIERAQFPRNTAIYRKRADAAESLLSFKGKYHSFEG----SFLEFMLSETERLHALNRRYTSPDEHAFFPSFLPDPILPPLDYQTVLMPNTININDQIMSVYLEKLLPHITQDIDDHTTYGSSANADVAVLQALSKRIHFGKFIAEAKFQAETERYTKLILNNDAEGIMDALTNLAVEDKVVMRVRFKASTYGQDIDGSTTHDATSFEHCKVDPQVIADLYRNFVMPLTKQVQVTYLLQRL-HHPSVAFVGPVGSF 277
BLAST of EWM29663.1 vs. NCBI_GenBank
Match: gi|698793282|ref|XP_009829673.1| (chorismate mutase [Aphanomyces astaci] >gi|574115240|gb|ETV80726.1| chorismate mutase [Aphanomyces astaci]) HSP 1 Score: 260.766 bits (665), Expect = 8.861e-78 Identity = 137/285 (48.07%), Postives = 185/285 (64.91%), Query Frame = 0
Query: 161 TTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRQNQAIYAKGILQLDPSIPDYPFLKTL-----SFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPDPILTPLQFPALLAPNTVDVNAQILHLYINEVVPAVCKEGDDEQ-HGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDIMGET-----------EACKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVGRKPPAPLPGPASHY 428
T T + LD R+ LIRQE++IIF+LIERAQF +N IY K + D + F SFLE++L ETE+LH RRYTSP+EHAFFP LPDPIL PL + ++L PNT+++N QI+ +Y+ +++P + + DD GSS ADI +LQALS+RIH GKF+AE KFQ E +Y AL+ A+D +G+M LTN AVE +V+ R + KASTYGQDI+ +T E CKV+P VIA +YR+ ++PLTK V+V YL +R+ P GP +
Sbjct: 2 TATPKKVLLDDYRNVLIRQEETIIFSLIERAQFLRNAPIYRK---RADATASLLSFKGKYNGFEGSFLEFMLSETERLHALNRRYTSPDEHAFFPSFLPDPILPPLDYQSVLIPNTININDQIMSVYLEKLLPHITHDSDDHTTFGSSANADIAVLQALSKRIHFGKFIAEAKFQAETKRYTALILANDAEGIMDALTNLAVEDKVVMRVRFKASTYGQDIVDDTTTTIHDNSNSIEHCKVDPQVIADLYRNFVMPLTKQVQVAYLLQRL-HHPSVSFVGPVGSF 282
BLAST of EWM29663.1 vs. NCBI_GenBank
Match: gi|223997580|ref|XP_002288463.1| (chorismate mutase-like protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220975571|gb|EED93899.1| chorismate mutase-like protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 253.062 bits (645), Expect = 1.144e-77 Identity = 144/291 (49.48%), Postives = 192/291 (65.98%), Query Frame = 0
Query: 147 TSSRVNSPSAVSASTTTADVMSLDSIRSTLIRQEDSIIFALIERAQFRQNQAIYAKGI---LQLDP-SIPDYPFLKTLSFLEYLLLETEKLHGKVRRYTSPEEHAFFPEHLPDPI--LTPLQFPALL----APNTVDVNAQILHLYINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQDIMGET-EAC--------------KVEPDVIAAIYRDVIIPLTKDVEVLYLFER 412
++S + + + + TT D++SL IRSTLIRQE++IIFALIERAQFRQN+ +Y G L + P S D LSFL+++L TE LH VRRY SPEEHAFFP LP L L +P LL A ++++ N + Y++ VVPA+ GDDEQ+GS+V+ADI +LQALS+RIH GKFVAE+K++ + ++ LV A D DGVM LLTN VE +VL RA+LKA+TYG++ M T EA KV+P +I +IYR++IIP+TKD+EV YLF R
Sbjct: 17 SASTIGESTTATDNITTRDLLSLPYIRSTLIRQEETIIFALIERAQFRQNRIVYEVGGVPGLGVPPGSSVDGGEEGELSFLDFMLTGTEALHSAVRRYESPEEHAFFPSRLPKRTNSLNILDYPQLLCEEEAISSLNWNKILYDKYLSVVVPAISTNGDDEQYGSTVIADIAVLQALSKRIHFGKFVAESKYRSDPEGFQRLVDAGDADGVMKLLTNEKVEEQVLTRARLKATTYGREPMLSTVEAVQSKERGVPNAKIKGKVDPSIIESIYRELIIPMTKDIEVAYLFLR 307 The following BLAST results are available for this feature:
BLAST of EWM29663.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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