rna1007, rna1007 (mRNA) Nannochloropsis gaditana

Overview
Namerna1007
Unique Namerna1007
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1506
Alignment locationCM002456.1:946667..948315 -

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Properties
Property NameValue
Productras-related protein rab-5b
Orig transcript idgnl|cribi|Naga_100112g12.5449.mrna
Orig protein idgnl|cribi|Naga_100112g12.5449
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:946667..948315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100112g12gene970Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1007rna1007-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29666.1cds1006Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1007 ID=rna1007|Name=rna1007|organism=Nannochloropsis gaditana|type=mRNA|length=1506bp
ACCTTCATCTTTGAAGCAGTTCGCCAGGGACATGTAAATGCACTTATAAA
ACATCAAAACCCTCGGGATTTGAGCTTTTGAGACTGGCTTAATGGTCGTC
TTTGTCGCTTACGGAATACCTCCTCCCCGCCCCGGCACGAAGTTTTCCCG
CAGGCCCGCCCGTCGCCATTGTTGCATAGTAACAACATTATGTGTGTCAG
CGCGCGTTCGGAGACAGCCACTCCGCCAGCTGCTGTGTCCGATACTAGTG
CAAGTGGTAGCATCAAACGTTACTATGACAATGCTGGGCTCGGTCGTCAG
GATGGGGACGCAATAGACCAACTGAATGCATTTATGACTAAGCAAGCGCA
CAAGGTCTGGAGTCCGGACAACGAGGACTACAAAGTGTACGAAATGGTGC
GCCAGGGACACGTGGTCTTCAAGAGGCGGTGCATGCCGTTGCTTTATTTC
TACTGGGCCACCATTCTGGTCGGGCTGCTTCGAGCCCCGTCTCTACTGTT
CTTGGCGGGGGCCTTGGCTTCCACGTACTTCTATATGGAACTGTACAGCG
CTGTTTTGCACATTGTGTTGGACAATCCGGCCTTTATAAAAGTACCCGGC
TTAGACCAGCCTGTTTTTGAGTTCTTAGCGCATCATATATTGCCCGTGGA
AATCGCGCAGAGACGGTATCGAGACATTTGCGGTGACTTGAACGTGATCG
TGGGCCTCATCTTCGCGATCAATCTGCTTCTCTTTGATTGGATGAAAGAC
GGGCGTGTCATGTGCGTTGTCGCCGCGGGTGGCGCCATGGCATACTTGGG
CCAGTTCGCTCACCGGCAGGCGCACATGCCCCCCTCGAAAGTGAGCCCCT
TTGCCCGCGCCTTGCAGGACGCGGGCCTCCTGGTCTCCCCGCACTTGCAC
CGCGCGCACCACCGCACGTACGACCGGGGGTTTGCCATCCTGGGGGGTTG
GTCCGAGGGCTTGATCACAACGCTCTACCACCACGTGGTCCCGTCCCAGT
ACGTGTGGCTGGCCTTGTTCGCTGTCATGACAGTGTTCGGGCTGGCGGGC
GTGGTGAAGATATACATCCCTGCCTACGACGCTTTCGTAGCTTTCGTGCA
GTAACGAGTCGCTGAGTGGAATGCAGGGGATGTCGATGGACCTTGATGGG
TGGGGATCTGACGTCGTGCGCGGGGATATCCGGCACGAGCAGCTAGCGAT
TGGTGAGAAAGGTGTGAAATTTACTGTAGACTCTGCACAGTCAGCAATGG
GAAAAGAAGTACAGGATTTGACTAAGCTGTTGATAGGAAAGCGACGGGTG
ACACTACCGGAGGCTGAAAGACATCGCTTTCCATAAGACTGGAGAAAGTA
GGTGACCGTGGCATCGAAAGACTCTCTCGTTCGGGAGCATAGTTTGGTAA
AATGGCAAGCAACCTAGTGTTATCGGAGTGGGCAGGTCGAGGGAAGTAAA
ATAAATCAGGGGGCTCGCCCACGAAGACCCTGCTGGCTTCTTCATAAGAG
CCGTTT
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protein sequence of rna1007

>rna1007-protein ID=rna1007-protein|Name=rna1007|organism=Nannochloropsis gaditana|type=polypeptide|length=202bp
MAARPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIE
LDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQR
WVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETS
AKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRT
CC
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mRNA from alignment at CM002456.1:946667..948315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1007 ID=rna1007|Name=rna1007|organism=Nannochloropsis gaditana|type=mRNA|length=1649bp|location=Sequence derived from alignment at CM002456.1:946667..948315- (Nannochloropsis gaditana)
CCTGCATTCTGTGATTTGTTATGTGGCTTGTGAACCTGGCGAGTTCATCA
CGCAGACACCGACTTCACGGCTACACTTTGGAGTCGAACCGTACACGTCC
GACTTGAGTCAAGCCTTCTTCTTTCTTTTCATGTCCCCGCTTCTTTTCTT
CCATTCCTCTAGCGATTGTGTTGCGTTGAAAAAAGATGGCTGCCCGTCCC
AGGGAAATCAAGCTTGTTATTATCGGGGATTCAGGGGTTGGGAAGAGTTC
TTTAGTCCTCCGCTTCGTCACGCAAAGCTTCAAACCCTTTTCGGAGAGCA
CCATCGGAGCGAGCTTCATGAGCAAAGTCATTGAGCTGGATGGACAGACT
GTCAAAGTCCAGATTTGGGACACGGCGGGGCAGGAAAAGTACAAGTCTTT
GGCGCCCATGTACTACAGGGGGGCCGCGGCTGCCATCGTCGTCTACGATA
TAACGCGGCGTGAAAGGTATGTGGATGCATAACGGGGCGAAAGAAGGAGA
CCCTCTCGGCTTCCATGGACCTTTGGTTGTCCAATTTAATCCATGGAATG
CCCACAGCTCACTATTTGACCGCATCGATTGTACGAACAGCTTCGGCACA
CTCCAACGGTGGGTCTCTGAGCTACAGGAGAAGGGCCCTCGCGACCTACG
AATCATGGTCGCCGGGAATAAGAAGGATTTGGAAGGCGATCGGCAAGTGG
CGGCGGAGGAAGCAGAGGCCTACGCGGAGAGCATCGGGGCCCGGTACATG
GAGACGTCCGCCAAGGACGACATGGCCGTTCAGGACCTCTTCCTCTCGCT
CTGTCAGCAGGTGCCCCTGGTCTCGCCCGCGGGGGGCTCGGCGATACGGG
CCGGAATTTACCTGTCTGGGCCCCAAGCGGAAGGGAAAGCGAAGCAAGGC
TCAAGGACGTGCTGTTGAATAGCGAAGGGAAGAAACTGTAAGTTGAGGAG
TGAGGAGGTGTGTACAGAATGACTGTCGCCAACAGTCTGGAATACGGGGG
CAACGGGAAGCGGTATGTAGATGATTTCGCACGAAAAGACCTTTCAGGCA
TGCATTGTGGCGGAACCGAAATAGCACGGAAAAACGATATCGCAAAACGG
CTCTTATGAAGAAGCCAGCAGGGTCTTCGTGGGCGAGCCCCCTGATTTAT
TTTACTTCCCTCGACCTGCCCACTCCGATAACACTAGGTTGCTTGCCATT
TTACCAAACTATGCTCCCGAACGAGAGAGTCTTTCGATGCCACGGTCACC
TACTTTCTCCAGTCTTATGGAAAGCGATGTCTTTCAGCCTCCGGTAGTGT
CACCCGTCGCTTTCCTATCAACAGCTTAGTCAAATCCTGTACTTCTTTTC
CCATTGCTGACTGTGCAGAGTCTACAGTAAATTTCACACCTTTCTCACCA
ATCGCTAGCTGCTCGTGCCGGATATCCCCGCGCACGACGTCAGATCCCCA
CCCATCAAGGTCCATCGACATCCCCTGCATTCCACTCAGCGACTCGTTAC
TGCACGAAAGCTACGAAAGCGTCGTAGGCAGGGATGTATATCTTCACCAC
GCCCGCCAGCCCGAACACTGTCATGACAGCGAACAAGGCCAGCCACACGT
ACTGGGACGGGACCACGTGGTGGTAGAGCGTTGTGATCAAGCCCTCGGA
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Coding sequence (CDS) from alignment at CM002456.1:946667..948315-

>rna1007 ID=rna1007|Name=rna1007|organism=Nannochloropsis gaditana|type=CDS|length=1218bp|location=Sequence derived from alignment at CM002456.1:946667..948315- (Nannochloropsis gaditana)
CTTCGGCACACTCCAACGGTGGGTCTCTGAGCTACAGGAGAAGGGCCCTC
GCGACCTACGAATCATGGTCGCCGGGAATAAGAAGGATTTGGAAGGCGAT
CGGCAAGTGGCGGCGGAGGAAGCAGAGGCCTACGCGGAGAGCATCGGGGC
CCGGTACATGGAGACGTCCGCCAAGGACGACATGGCCGTTCAGGACCTCT
TCCTCTCGCTCTGTCAGCAGGTGCCCCTGGTCTCGCCCGCGGGGGGCTCG
GCGATACGGGCCGGAATTTACCTGTCTGGGCCCCAAGCGGAAGGGAAAGC
GAAGCAAGGCTCAAGGACGTGCTGTTGAATGGCTGCCCGTCCCAGGGAAA
TCAAGCTTGTTATTATCGGGGATTCAGGGGTTGGGAAGAGTTCTTTAGTC
CTCCGCTTCGTCACGCAAAGCTTCAAACCCTTTTCGGAGAGCACCATCGG
AGCGAGCTTCATGAGCAAAGTCATTGAGCTGGATGGACAGACTGTCAAAG
TCCAGATTTGGGACACGGCGGGGCAGGAAAAGTACAAGTCTTTGGCGCCC
ATGTACTACAGGGGGGCCGCGGCTGCCATCGTCGTCTACGATATAACGCG
GCGTGAAAGCTTCGGCACACTCCAACGGTGGGTCTCTGAGCTACAGGAGA
AGGGCCCTCGCGACCTACGAATCATGGTCGCCGGGAATAAGAAGGATTTG
GAAGGCGATCGGCAAGTGGCGGCGGAGGAAGCAGAGGCCTACGCGGAGAG
CATCGGGGCCCGGTACATGGAGACGTCCGCCAAGGACGACATGGCCGTTC
AGGACCTCTTCCTCTCGCTCTGTCAGCAGGTGCCCCTGGTCTCGCCCGCG
GGGGGCTCGGCGATACGGGCCGGAATTTACCTGTCTGGGCCCCAAGCGGA
AGGGAAAGCGAAGCAAGGCTCAAGGACGTGCTGTTGAATGGCTGCCCGTC
CCAGGGAAATCAAGCTTGTTATTATCGGGGATTCAGGGGTTGGGAAGAGT
TCTTTAGTCCTCCGCTTCGTCACGCAAAGCTTCAAACCCTTTTCGGAGAG
CACCATCGGAGCGAGCTTCATGAGCAAAGTCATTGAGCTGGATGGACAGA
CTGTCAAAGTCCAGATTTGGGACACGGCGGGGCAGGAAAAGTACAAGTCT
TTGGCGCCCATGTACTACAGGGGGGCCGCGGCTGCCATCGTCGTCTACGA
TATAACGCGGCGTGAAAG
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Synonyms
Publications