EWM29666.1, cds1006 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|585112240|gb|EWM29666.1| (ras-related protein rab-5b [Nannochloropsis gaditana]) HSP 1 Score: 411.379 bits (1056), Expect = 2.360e-145 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 Query: 1 MAARPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202 MAARPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC Sbjct: 1 MAARPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|673051377|ref|XP_008879649.1| (hypothetical protein H310_13792 [Aphanomyces invadans] >gi|574464678|gb|ETV91723.1| hypothetical protein H310_13792 [Aphanomyces invadans]) HSP 1 Score: 239.195 bits (609), Expect = 2.885e-77 Identity = 119/199 (59.80%), Postives = 153/199 (76.88%), Query Frame = 0 Query: 4 RPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202 + RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK++ + Q +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S TL+ WV EL++ GP ++ I +AGNK DLE R+V++ A+AYA+ IGA ++ETSAK+D V DLF ++ QQ+P SPAG + A + P GKAK G CC Sbjct: 7 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLVTLKNWVKELKQLGPDNIVIAIAGNKSDLEDQREVSSATAKAYADEIGAVFIETSAKEDTNVLDLFKTISQQLP--SPAGDN--HALPEIVDPYGSGKAKGG---CC 198
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|698814124|ref|XP_009840091.1| (hypothetical protein H257_14062 [Aphanomyces astaci] >gi|574104852|gb|ETV70379.1| hypothetical protein H257_14062 [Aphanomyces astaci]) HSP 1 Score: 237.654 bits (605), Expect = 1.060e-76 Identity = 118/199 (59.30%), Postives = 153/199 (76.88%), Query Frame = 0 Query: 4 RPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202 + RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK++ + Q +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S TL+ WV EL++ GP ++ I +AGNK DL+ R+V++ A+AYA+ IGA ++ETSAK+D V DLF ++ QQ+P SPAG + A + P GKAK G CC Sbjct: 7 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLVTLKNWVKELKQLGPDNIVIAIAGNKSDLDDKREVSSATAKAYADEIGAVFIETSAKEDTNVLDLFKTISQQLP--SPAGDN--HALPEIVDPYGSGKAKGG---CC 198
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|1173959658|gb|OQS05869.1| (Rab5 family GTPase [Thraustotheca clavata]) HSP 1 Score: 236.498 bits (602), Expect = 3.163e-76 Identity = 118/199 (59.30%), Postives = 152/199 (76.38%), Query Frame = 0 Query: 4 RPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202 + RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK+I + Q +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S TL+ WV EL++ GP ++ I +AGNK DLE R+V+++ A+AYA+ IGA ++ETSAK+D V DLF ++ QQ+P SPAG + A + P K K G CC Sbjct: 6 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIMVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEDKREVSSQTAKAYADEIGAVFIETSAKEDTNVSDLFKTISQQLP--SPAGDN--NALPEIVDPYGGEKKKGG---CC 197
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|635370244|emb|CCI41542.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 235.343 bits (599), Expect = 8.846e-76 Identity = 106/167 (63.47%), Postives = 140/167 (83.83%), Query Frame = 0 Query: 4 RPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPL 170 + RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK+I ++ +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S TL+ WV EL++ GP ++ I +AGNK DLE R+V + +A+AYA+ IGA ++ETSAK+D V DLF+S+ +Q+P+ Sbjct: 7 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIMVENTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLATLKNWVKELKQLGPENIVIAIAGNKSDLEDKREVPSAQAKAYADEIGALFIETSAKEDTNVSDLFISISKQLPV 173
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|953495508|emb|CEG42404.1| (gtp binding protein [Plasmopara halstedii]) HSP 1 Score: 234.958 bits (598), Expect = 1.298e-75 Identity = 115/200 (57.50%), Postives = 150/200 (75.00%), Query Frame = 0 Query: 3 ARPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202 ++ RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK+I ++ +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S TL+ WV EL++ GP ++ I +AGNK DLE R+V A +A AYAE IGA ++ETSAK+D V DLF+ + Q +P S A +A+ + G K+ S +CC Sbjct: 7 SKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIVVNDTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEEKREVPASQARAYAEEIGALFIETSAKEDTNVSDLFIQISQALPTAS-AESNALPEIV-----DPYGGNKKKSSSCC 200
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|325188437|emb|CCA22973.1| (Rab5 family GTPase putative [Albugo laibachii Nc14]) HSP 1 Score: 234.958 bits (598), Expect = 1.400e-75 Identity = 106/166 (63.86%), Postives = 139/166 (83.73%), Query Frame = 0 Query: 4 RPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVP 169 + RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK+I ++ +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S TL+ WV EL++ GP ++ I +AGNK DLE R+V + +A+AYA+ IGA ++ETSAK+D V DLF+S+ +Q+P Sbjct: 7 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIMVENTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLATLKNWVKELKQLGPENIVIAIAGNKSDLEDKREVPSAQAKAYADEIGALFIETSAKEDTNVSDLFISISKQLP 172
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|813149613|ref|XP_012200453.1| (hypothetical protein SPRG_05781 [Saprolegnia parasitica CBS 223.65] >gi|641534980|gb|KDO28910.1| hypothetical protein SPRG_05781 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 234.572 bits (597), Expect = 1.495e-75 Identity = 110/174 (63.22%), Postives = 144/174 (82.76%), Query Frame = 0 Query: 4 RPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGS 177 + RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK++ + Q +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S TL+ WV EL++ GP ++ I +AGNK DL+ R+V++E A+AYA+ IGA ++ETSAK+D V DLF ++ QQ+P SPAG + Sbjct: 6 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLQTLKNWVKELKQLGPDNIVIAIAGNKSDLKDKREVSSETAKAYADEIGAVFIETSAKEDTNVSDLFKTISQQLP--SPAGDN 177
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|669163800|ref|XP_008617462.1| (Ras-like protein Rab-31 [Saprolegnia diclina VS20] >gi|530730885|gb|EQC29127.1| Ras-like protein Rab-31 [Saprolegnia diclina VS20]) HSP 1 Score: 234.572 bits (597), Expect = 1.562e-75 Identity = 110/174 (63.22%), Postives = 144/174 (82.76%), Query Frame = 0 Query: 4 RPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGS 177 + RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK++ + Q +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S TL+ WV EL++ GP ++ I +AGNK DL+ R+V++E A+AYA+ IGA ++ETSAK+D V DLF ++ QQ+P SPAG + Sbjct: 6 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLQTLKNWVKELKQLGPDNIVIAIAGNKSDLKDKREVSSETAKAYADEIGAVFVETSAKEDTNVSDLFKTISQQLP--SPAGDN 177
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|675203415|ref|XP_008910592.1| (hypothetical protein PPTG_15292 [Phytophthora parasitica INRA-310] >gi|568054877|gb|ETM51648.1| hypothetical protein L914_04561 [Phytophthora parasitica] >gi|568089270|gb|ETN04117.1| hypothetical protein PPTG_15292 [Phytophthora parasitica INRA-310] >gi|570332858|gb|ETO80806.1| hypothetical protein F444_04775 [Phytophthora parasitica P1976] >gi|570956867|gb|ETP21846.1| hypothetical protein F441_04727 [Phytophthora parasitica CJ01A1] >gi|570992179|gb|ETP49742.1| hypothetical protein F442_04794 [Phytophthora parasitica P10297]) HSP 1 Score: 234.187 bits (596), Expect = 2.501e-75 Identity = 117/200 (58.50%), Postives = 150/200 (75.00%), Query Frame = 0 Query: 3 ARPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202 ++ RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK+I ++ +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S TL+ WV EL++ GP ++ I +AGNK DLE R+V A +A AYAE IGA ++ETSAK+D V DLF+ + Q +P S A +A+ + P GK K S CC Sbjct: 7 SKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIVVNDTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEEKREVPASQARAYAEEIGALFIETSAKEDTNVSDLFIQISQALPTAS-AESNALPE---IVDPYGGGKKK--SSGCC 200 The following BLAST results are available for this feature:
BLAST of EWM29666.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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