EWM29666.1, cds1006 (CDS) Nannochloropsis gaditana

Overview
NameEWM29666.1
Unique Namecds1006
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:947850..948130 -
Alignment locationCM002456.1:947398..947725 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29666.1
Productras-related protein rab-5b
Orig transcript idgnl|cribi|Naga_100112g12.5449.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:947850..948130 -
CM002456.1supercontigCM002456.1:947398..947725 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006913nucleocytoplasmic transport
GO:0006886intracellular protein transport
GO:0007165signal transduction
GO:0015031protein transport
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR005225Small_GTP-bd_dom
IPR002041Ran_GTPase
IPR003578Small_GTPase_Rho
IPR020849Small_GTPase_Ras
IPR003579Small_GTPase_Rab_type
IPR001806Small_GTPase
Homology
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|585112240|gb|EWM29666.1| (ras-related protein rab-5b [Nannochloropsis gaditana])

HSP 1 Score: 411.379 bits (1056), Expect = 2.360e-145
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query:    1 MAARPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202
            MAARPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC
Sbjct:    1 MAARPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202          
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|673051377|ref|XP_008879649.1| (hypothetical protein H310_13792 [Aphanomyces invadans] >gi|574464678|gb|ETV91723.1| hypothetical protein H310_13792 [Aphanomyces invadans])

HSP 1 Score: 239.195 bits (609), Expect = 2.885e-77
Identity = 119/199 (59.80%), Postives = 153/199 (76.88%), Query Frame = 0
Query:    4 RPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202
            + RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK++ +  Q +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S  TL+ WV EL++ GP ++ I +AGNK DLE  R+V++  A+AYA+ IGA ++ETSAK+D  V DLF ++ QQ+P  SPAG +   A   +  P   GKAK G   CC
Sbjct:    7 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLVTLKNWVKELKQLGPDNIVIAIAGNKSDLEDQREVSSATAKAYADEIGAVFIETSAKEDTNVLDLFKTISQQLP--SPAGDN--HALPEIVDPYGSGKAKGG---CC 198          
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|698814124|ref|XP_009840091.1| (hypothetical protein H257_14062 [Aphanomyces astaci] >gi|574104852|gb|ETV70379.1| hypothetical protein H257_14062 [Aphanomyces astaci])

HSP 1 Score: 237.654 bits (605), Expect = 1.060e-76
Identity = 118/199 (59.30%), Postives = 153/199 (76.88%), Query Frame = 0
Query:    4 RPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202
            + RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK++ +  Q +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S  TL+ WV EL++ GP ++ I +AGNK DL+  R+V++  A+AYA+ IGA ++ETSAK+D  V DLF ++ QQ+P  SPAG +   A   +  P   GKAK G   CC
Sbjct:    7 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLVTLKNWVKELKQLGPDNIVIAIAGNKSDLDDKREVSSATAKAYADEIGAVFIETSAKEDTNVLDLFKTISQQLP--SPAGDN--HALPEIVDPYGSGKAKGG---CC 198          
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|1173959658|gb|OQS05869.1| (Rab5 family GTPase [Thraustotheca clavata])

HSP 1 Score: 236.498 bits (602), Expect = 3.163e-76
Identity = 118/199 (59.30%), Postives = 152/199 (76.38%), Query Frame = 0
Query:    4 RPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202
            + RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK+I +  Q +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S  TL+ WV EL++ GP ++ I +AGNK DLE  R+V+++ A+AYA+ IGA ++ETSAK+D  V DLF ++ QQ+P  SPAG +   A   +  P    K K G   CC
Sbjct:    6 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIMVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEDKREVSSQTAKAYADEIGAVFIETSAKEDTNVSDLFKTISQQLP--SPAGDN--NALPEIVDPYGGEKKKGG---CC 197          
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|635370244|emb|CCI41542.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 235.343 bits (599), Expect = 8.846e-76
Identity = 106/167 (63.47%), Postives = 140/167 (83.83%), Query Frame = 0
Query:    4 RPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPL 170
            + RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK+I ++   +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S  TL+ WV EL++ GP ++ I +AGNK DLE  R+V + +A+AYA+ IGA ++ETSAK+D  V DLF+S+ +Q+P+
Sbjct:    7 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIMVENTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLATLKNWVKELKQLGPENIVIAIAGNKSDLEDKREVPSAQAKAYADEIGALFIETSAKEDTNVSDLFISISKQLPV 173          
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|953495508|emb|CEG42404.1| (gtp binding protein [Plasmopara halstedii])

HSP 1 Score: 234.958 bits (598), Expect = 1.298e-75
Identity = 115/200 (57.50%), Postives = 150/200 (75.00%), Query Frame = 0
Query:    3 ARPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202
            ++ RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK+I ++   +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S  TL+ WV EL++ GP ++ I +AGNK DLE  R+V A +A AYAE IGA ++ETSAK+D  V DLF+ + Q +P  S A  +A+   +        G  K+ S +CC
Sbjct:    7 SKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIVVNDTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEEKREVPASQARAYAEEIGALFIETSAKEDTNVSDLFIQISQALPTAS-AESNALPEIV-----DPYGGNKKKSSSCC 200          
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|325188437|emb|CCA22973.1| (Rab5 family GTPase putative [Albugo laibachii Nc14])

HSP 1 Score: 234.958 bits (598), Expect = 1.400e-75
Identity = 106/166 (63.86%), Postives = 139/166 (83.73%), Query Frame = 0
Query:    4 RPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVP 169
            + RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK+I ++   +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S  TL+ WV EL++ GP ++ I +AGNK DLE  R+V + +A+AYA+ IGA ++ETSAK+D  V DLF+S+ +Q+P
Sbjct:    7 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIMVENTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLATLKNWVKELKQLGPENIVIAIAGNKSDLEDKREVPSAQAKAYADEIGALFIETSAKEDTNVSDLFISISKQLP 172          
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|813149613|ref|XP_012200453.1| (hypothetical protein SPRG_05781 [Saprolegnia parasitica CBS 223.65] >gi|641534980|gb|KDO28910.1| hypothetical protein SPRG_05781 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 234.572 bits (597), Expect = 1.495e-75
Identity = 110/174 (63.22%), Postives = 144/174 (82.76%), Query Frame = 0
Query:    4 RPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGS 177
            + RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK++ +  Q +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S  TL+ WV EL++ GP ++ I +AGNK DL+  R+V++E A+AYA+ IGA ++ETSAK+D  V DLF ++ QQ+P  SPAG +
Sbjct:    6 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLQTLKNWVKELKQLGPDNIVIAIAGNKSDLKDKREVSSETAKAYADEIGAVFIETSAKEDTNVSDLFKTISQQLP--SPAGDN 177          
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|669163800|ref|XP_008617462.1| (Ras-like protein Rab-31 [Saprolegnia diclina VS20] >gi|530730885|gb|EQC29127.1| Ras-like protein Rab-31 [Saprolegnia diclina VS20])

HSP 1 Score: 234.572 bits (597), Expect = 1.562e-75
Identity = 110/174 (63.22%), Postives = 144/174 (82.76%), Query Frame = 0
Query:    4 RPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGS 177
            + RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK++ +  Q +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S  TL+ WV EL++ GP ++ I +AGNK DL+  R+V++E A+AYA+ IGA ++ETSAK+D  V DLF ++ QQ+P  SPAG +
Sbjct:    6 KAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMLLVGDQAIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLQTLKNWVKELKQLGPDNIVIAIAGNKSDLKDKREVSSETAKAYADEIGAVFVETSAKEDTNVSDLFKTISQQLP--SPAGDN 177          
BLAST of EWM29666.1 vs. NCBI_GenBank
Match: gi|675203415|ref|XP_008910592.1| (hypothetical protein PPTG_15292 [Phytophthora parasitica INRA-310] >gi|568054877|gb|ETM51648.1| hypothetical protein L914_04561 [Phytophthora parasitica] >gi|568089270|gb|ETN04117.1| hypothetical protein PPTG_15292 [Phytophthora parasitica INRA-310] >gi|570332858|gb|ETO80806.1| hypothetical protein F444_04775 [Phytophthora parasitica P1976] >gi|570956867|gb|ETP21846.1| hypothetical protein F441_04727 [Phytophthora parasitica CJ01A1] >gi|570992179|gb|ETP49742.1| hypothetical protein F442_04794 [Phytophthora parasitica P10297])

HSP 1 Score: 234.187 bits (596), Expect = 2.501e-75
Identity = 117/200 (58.50%), Postives = 150/200 (75.00%), Query Frame = 0
Query:    3 ARPREIKLVIIGDSGVGKSSLVLRFVTQSFKPFSESTIGASFMSKVIELDGQTVKVQIWDTAGQEKYKSLAPMYYRGAAAAIVVYDITRRESFGTLQRWVSELQEKGPRDLRIMVAGNKKDLEGDRQVAAEEAEAYAESIGARYMETSAKDDMAVQDLFLSLCQQVPLVSPAGGSAIRAGIYLSGPQAEGKAKQGSRTCC 202
            ++ RE+K+V++GD+GVGKSSLVLRFVT +F+P+SESTIGASFMSK+I ++   +K QIWDTAGQEKY SLAPMYYRGAAAAIVVYDITR++S  TL+ WV EL++ GP ++ I +AGNK DLE  R+V A +A AYAE IGA ++ETSAK+D  V DLF+ + Q +P  S A  +A+     +  P   GK K  S  CC
Sbjct:    7 SKAREVKVVLLGDTGVGKSSLVLRFVTNNFRPYSESTIGASFMSKMIVVNDTPIKYQIWDTAGQEKYHSLAPMYYRGAAAAIVVYDITRKQSLTTLKNWVKELKQLGPDNIVIAIAGNKSDLEEKREVPASQARAYAEEIGALFIETSAKEDTNVSDLFIQISQALPTAS-AESNALPE---IVDPYGGGKKK--SSGCC 200          
The following BLAST results are available for this feature:
BLAST of EWM29666.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112240|gb|EWM29666.1|2.360e-145100.00ras-related protein rab-5b [Nannochloropsis gadita... [more]
gi|673051377|ref|XP_008879649.1|2.885e-7759.80hypothetical protein H310_13792 [Aphanomyces invad... [more]
gi|698814124|ref|XP_009840091.1|1.060e-7659.30hypothetical protein H257_14062 [Aphanomyces astac... [more]
gi|1173959658|gb|OQS05869.1|3.163e-7659.30Rab5 family GTPase [Thraustotheca clavata][more]
gi|635370244|emb|CCI41542.1|8.846e-7663.47unnamed protein product [Albugo candida][more]
gi|953495508|emb|CEG42404.1|1.298e-7557.50gtp binding protein [Plasmopara halstedii][more]
gi|325188437|emb|CCA22973.1|1.400e-7563.86Rab5 family GTPase putative [Albugo laibachii Nc14... [more]
gi|813149613|ref|XP_012200453.1|1.495e-7563.22hypothetical protein SPRG_05781 [Saprolegnia paras... [more]
gi|669163800|ref|XP_008617462.1|1.562e-7563.22Ras-like protein Rab-31 [Saprolegnia diclina VS20]... [more]
gi|675203415|ref|XP_008910592.1|2.501e-7558.50hypothetical protein PPTG_15292 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1007rna1007Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications