rna10067, rna10067 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10067
Unique Name	rna10067
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	351
Alignment location	KK037261.1:55792..57317 -

Link to JBrowse

Properties


Property Name	Value
Product	thiol peroxidase
Orig transcript id	gnl\|cribi\|Naga_101233g2.1219.mrna
Orig protein id	gnl\|cribi\|Naga_101233g2.1219
Gene	prx
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037261.1	supercontig	KK037261.1:55792..57317 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
prx	gene9768	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10067	rna10067-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20636.1	cds10036	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037261.1:55792..57317-
coding sequence from alignment at KK037261.1:55792..57317-

mRNA sequence

>rna10067 ID=rna10067|Name=rna10067|organism=Nannochloropsis gaditana|type=mRNA|length=351bp
ATGCATCGTAGTGCTTTCAGGGCAAGTGAACAAGGACGTTGGATCGAGAC
AGGCGGGCAGGGAGGGCAGGAGATAGGGAGGGAGGAAGGGAGGGAGGGCT
ATGTGGACGGTGTCACCCAAAGAACTCGGGTCCGAAAAGTAGGGGGTGAA
GTCCTGTTTTCTGTAGTGAGCAAGCTTTTCGAAGCCAAGCGAGTTGAATT
GTTCTTGAGATGTACGAAGCGTGATCGTGGGAAAAGGGAGGCCAGTCGGC
GCCTTTTTAATGCTTCTTTTTCTTCTCCCACGGCTAGTGGATCGCTTTCC
TTTTTTAGCGCCATTTTTACGTGGCAACTCTCGTCCGACGCGCTGGCCTA
A

protein sequence of rna10067

>rna10067-protein ID=rna10067-protein|Name=rna10067|organism=Nannochloropsis gaditana|type=polypeptide|length=108bp
MSHCTPSTISTASFDLHTMRVAAYVTLTFAALTSQALAFMPAGSLVSPVS
SSKSRLLATTMSIEVGSKLPLTTTFQHLVDGKPTDVPALELFAGKKIVLV
GVPGALTP

mRNA from alignment at KK037261.1:55792..57317-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10067 ID=rna10067|Name=rna10067|organism=Nannochloropsis gaditana|type=mRNA|length=1526bp|location=Sequence derived from alignment at KK037261.1:55792..57317- (Nannochloropsis gaditana)
ATGAGTCACTGCACTCCAAGTAGGTACGTGTACATGGCCTTTCGCCGCTT
TGCGCACCTTTTATCCATGTTAACATCTCAAATCAGAGTCCTACTCGAGT
CAGTCCATTCCCGTCTGCCTCAGTGTTTTAGACGGTCGATTTTTATATTT
AGACATCGCGAACCTGAAACCATGCGTCGATAGTCCAATCTGTCTTCTAT
TTGACGGCCCAAAATGCCTGTCAGACACAATGACGTGCGCCCGGGATGGA
TGTAGAGTGTCCCCGCGATTCGTTATGTGCAAGCTCGCCCTTCTCCATTT
AGTATCTTGCATTTCAAAGCGTCATTCATCGCTTGGGCAGCCAAATATGT
GTAGCCCGTTCTTTTTATCCCAATCATTGCAAACGTGGGTCCTGGATGGG
CTGCCCTCTAGTTGTAGAAAGGGACGGGTGCTGCTCTTTTGTGGCCGTGA
CCATGCGATGTGTCGTCGAGCCTGCTATGTTCTTTTTCCTATTATGTTTC
CACGGCGCATGCCTTCCATCTCAGTGGGTCGCTGCCCCGGTGGCGTCTAT
TTTCACATCCGACGCGACGGACAGCGCATTCAAAAACTCGTTCCTTCCCT
TCCACCCACACAGGCACTATTTCCACCGCTTCCTTCGACCTTCACACCAT
GCGTGTCGCTGCCTACGTGACGCTGACTTTCGCAGCCCTGACCTCCCAAG
CTCTCGCCTTCATGCCCGCAGGATCCTTGGTCAGCCCCGTCTCGAGCTCG
AAGAGGTATGTTTCAAGGACCGTGCATGGCTGGATATGGACGTAAGGCAT
TGGGAAAGCATCAGGATAGGTGATTGACGGGCAGGATGTGGACGGCGAAG
AAAAGAGACACGGTGCCCGTCGAGGAGGAGGATCGAACTAATGAAAGGAG
GGGCAAGAAGCTGCGTTTCCCCCAAGACACACAACGTGCACGAGCAGGGG
ATAGAGGGAAGCCTAATTCTGCTAGGGACTGCATCATAACGACTCTGGGA
ATAAGCTTCATCTCCCCTTGCTCACATTTACCAATCCAATCCACGCCCTA
CCACCTTCCTCGTAAGCCGGCTGCTTGCGACTACAATGAGCATCGAAGTA
GGAAGCAAGCTGCCCCTCACCACCACCTTCCAGCACCTTGTGGACGGCAA
GCCCACTGTAAGTATCTCACTCTCCTTGCTTTCTTGATCCCTCCCTCTCT
TCCTTCCCTTCTCATCATTGTCTCTCCACCTCCTTTGAGCCTTGCGCCTT
CCCTGTTCGTGTCCTGGCTAGATTTAAGGCTGATGCAAGCTGATCTTTTC
TTCTCCGTACGCCTGTTGCACGCCCTCCTGTCTGTGTTTAAACGACGCTC
ACGTGCGCAAACCCCCTGCTCCCCTCTTTGAGCCGTCCTCCCCTCCCTTC
TGATCCCCTCCCCTGGCCTCGGTCCACAATCTTTTCCCCGCGCTCGGTCC
ACAGGATGTCCCGGCCCTGGAACTCTTCGCAGGGAAGAAGATCGTGCTCG
TCGGTGTCCCCGGTGCTTTGACCCCC

Coding sequence (CDS) from alignment at KK037261.1:55792..57317-

>rna10067 ID=rna10067|Name=rna10067|organism=Nannochloropsis gaditana|type=CDS|length=1296bp|location=Sequence derived from alignment at KK037261.1:55792..57317- (Nannochloropsis gaditana)
GATGTCCCGGCCCTGGAACTCTTCGCAGGGAAGAAGATCGTGCTCGTCGG
TGTCCCCGGTGCTTTGACCCCCCCGGCTGCTTGCGACTACAATGAGCATC
GAAGTAGGAAGCAAGCTGCCCCTCACCACCACCTTCCAGCACCTTGTGGA
CGGCAAGCCCACTGCACTATTTCCACCGCTTCCTTCGACCTTCACACCAT
GCGTGTCGCTGCCTACGTGACGCTGACTTTCGCAGCCCTGACCTCCCAAG
CTCTCGCCTTCATGCCCGCAGGATCCTTGGTCAGCCCCGTCTCGAGCTCG
AAGAGATGAGTCACTGCACTCCAAGATGTCCCGGCCCTGGAACTCTTCGC
AGGGAAGAAGATCGTGCTCGTCGGTGTCCCCGGTGCTTTGACCCCCCCGG
CTGCTTGCGACTACAATGAGCATCGAAGTAGGAAGCAAGCTGCCCCTCAC
CACCACCTTCCAGCACCTTGTGGACGGCAAGCCCACTGCACTATTTCCAC
CGCTTCCTTCGACCTTCACACCATGCGTGTCGCTGCCTACGTGACGCTGA
CTTTCGCAGCCCTGACCTCCCAAGCTCTCGCCTTCATGCCCGCAGGATCC
TTGGTCAGCCCCGTCTCGAGCTCGAAGAGATGAGTCACTGCACTCCAAGA
TGTCCCGGCCCTGGAACTCTTCGCAGGGAAGAAGATCGTGCTCGTCGGTG
TCCCCGGTGCTTTGACCCCCCCGGCTGCTTGCGACTACAATGAGCATCGA
AGTAGGAAGCAAGCTGCCCCTCACCACCACCTTCCAGCACCTTGTGGACG
GCAAGCCCACTGCACTATTTCCACCGCTTCCTTCGACCTTCACACCATGC
GTGTCGCTGCCTACGTGACGCTGACTTTCGCAGCCCTGACCTCCCAAGCT
CTCGCCTTCATGCCCGCAGGATCCTTGGTCAGCCCCGTCTCGAGCTCGAA
GAGATGAGTCACTGCACTCCAAGATGTCCCGGCCCTGGAACTCTTCGCAG
GGAAGAAGATCGTGCTCGTCGGTGTCCCCGGTGCTTTGACCCCCCCGGCT
GCTTGCGACTACAATGAGCATCGAAGTAGGAAGCAAGCTGCCCCTCACCA
CCACCTTCCAGCACCTTGTGGACGGCAAGCCCACTGCACTATTTCCACCG
CTTCCTTCGACCTTCACACCATGCGTGTCGCTGCCTACGTGACGCTGACT
TTCGCAGCCCTGACCTCCCAAGCTCTCGCCTTCATGCCCGCAGGATCCTT
GGTCAGCCCCGTCTCGAGCTCGAAGAGATGAGTCACTGCACTCCAA

Synonyms

Publications