EWM20636.1, cds10036 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20636.1 vs. NCBI_GenBank
Match: gi|585100430|gb|EWM20636.1| (thiol peroxidase, partial [Nannochloropsis gaditana]) HSP 1 Score: 212.231 bits (539), Expect = 1.343e-69 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
Query: 1 MSHCTPSTISTASFDLHTMRVAAYVTLTFAALTSQALAFMPAGSLVSPVSSSKSRLLATTMSIEVGSKLPLTTTFQHLVDGKPTDVPALELFAGKKIVLVGVPGALTP 108
MSHCTPSTISTASFDLHTMRVAAYVTLTFAALTSQALAFMPAGSLVSPVSSSKSRLLATTMSIEVGSKLPLTTTFQHLVDGKPTDVPALELFAGKKIVLVGVPGALTP
Sbjct: 1 MSHCTPSTISTASFDLHTMRVAAYVTLTFAALTSQALAFMPAGSLVSPVSSSKSRLLATTMSIEVGSKLPLTTTFQHLVDGKPTDVPALELFAGKKIVLVGVPGALTP 108
BLAST of EWM20636.1 vs. NCBI_GenBank
Match: gi|219921373|emb|CAQ52405.1| (peroxyredoxin [Laminaria digitata]) HSP 1 Score: 66.2402 bits (160), Expect = 2.295e-11 Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0
Query: 61 MSIEVGSKLPLTTTFQHLVDGKPTDVPALELFAGKKIVLVGVPGALTP 108
M+I+ G K P T+FQ L DG P DVPA ++FAGKK+V+ GVPGA TP
Sbjct: 1 MAIKEGDKFPAGTSFQILGDGGPADVPAADVFAGKKVVICGVPGAFTP 48
BLAST of EWM20636.1 vs. NCBI_GenBank
Match: gi|299471059|emb|CBN78919.1| (Peroxyredoxin [Ectocarpus siliculosus]) HSP 1 Score: 65.0846 bits (157), Expect = 1.395e-10 Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0
Query: 54 SRLLATTMSIEVGSKLPLTTTFQHLVDGKPTDVPALELFAGKKIVLVGVPGALTP 108
SRL M+I+ G K P+ +TFQ D P DVPA E+FAGKK+V+ GVPGA TP
Sbjct: 41 SRL---AMAIKEGDKFPMDSTFQIKGDAGPADVPASEIFAGKKVVICGVPGAFTP 92
BLAST of EWM20636.1 vs. NCBI_GenBank
Match: gi|929771746|ref|XP_014160806.1| (hypothetical protein SARC_00949 [Sphaeroforma arctica JP610] >gi|906958790|gb|KNC86904.1| hypothetical protein SARC_00949 [Sphaeroforma arctica JP610]) HSP 1 Score: 57.7658 bits (138), Expect = 5.121e-8 Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 0
Query: 63 IEVGSKLPLTTTFQHLVDGKPTDVPALELFAGKKIVLVGVPGALTP 108
++VG K+P TF+ + DG PTDVP E+F GKK+V++GVPGA TP
Sbjct: 22 VKVGDKIP-AGTFKIIRDGAPTDVPTSEVFDGKKVVVLGVPGAFTP 66 The following BLAST results are available for this feature:
BLAST of EWM20636.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|