EWM20636.1, cds10036 (CDS) Nannochloropsis gaditana

Overview
NameEWM20636.1
Unique Namecds10036
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:57299..57317 -
Alignment locationKK037261.1:56563..56704 -
Alignment locationKK037261.1:56161..56251 -
Alignment locationKK037261.1:55792..55863 -

Link to JBrowse

Properties
Property NameValue
Start range55792
Start range.
Protein idEWM20636.1
Productthiol peroxidase
Partialtrue
Orig transcript idgnl|cribi|Naga_101233g2.1219.mrna
Geneprx
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:57299..57317 -
KK037261.1supercontigKK037261.1:56563..56704 -
KK037261.1supercontigKK037261.1:56161..56251 -
KK037261.1supercontigKK037261.1:55792..55863 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0042221response to chemical
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM20636.1 vs. NCBI_GenBank
Match: gi|585100430|gb|EWM20636.1| (thiol peroxidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 212.231 bits (539), Expect = 1.343e-69
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
Query:    1 MSHCTPSTISTASFDLHTMRVAAYVTLTFAALTSQALAFMPAGSLVSPVSSSKSRLLATTMSIEVGSKLPLTTTFQHLVDGKPTDVPALELFAGKKIVLVGVPGALTP 108
            MSHCTPSTISTASFDLHTMRVAAYVTLTFAALTSQALAFMPAGSLVSPVSSSKSRLLATTMSIEVGSKLPLTTTFQHLVDGKPTDVPALELFAGKKIVLVGVPGALTP
Sbjct:    1 MSHCTPSTISTASFDLHTMRVAAYVTLTFAALTSQALAFMPAGSLVSPVSSSKSRLLATTMSIEVGSKLPLTTTFQHLVDGKPTDVPALELFAGKKIVLVGVPGALTP 108          
BLAST of EWM20636.1 vs. NCBI_GenBank
Match: gi|219921373|emb|CAQ52405.1| (peroxyredoxin [Laminaria digitata])

HSP 1 Score: 66.2402 bits (160), Expect = 2.295e-11
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0
Query:   61 MSIEVGSKLPLTTTFQHLVDGKPTDVPALELFAGKKIVLVGVPGALTP 108
            M+I+ G K P  T+FQ L DG P DVPA ++FAGKK+V+ GVPGA TP
Sbjct:    1 MAIKEGDKFPAGTSFQILGDGGPADVPAADVFAGKKVVICGVPGAFTP 48          
BLAST of EWM20636.1 vs. NCBI_GenBank
Match: gi|299471059|emb|CBN78919.1| (Peroxyredoxin [Ectocarpus siliculosus])

HSP 1 Score: 65.0846 bits (157), Expect = 1.395e-10
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0
Query:   54 SRLLATTMSIEVGSKLPLTTTFQHLVDGKPTDVPALELFAGKKIVLVGVPGALTP 108
            SRL    M+I+ G K P+ +TFQ   D  P DVPA E+FAGKK+V+ GVPGA TP
Sbjct:   41 SRL---AMAIKEGDKFPMDSTFQIKGDAGPADVPASEIFAGKKVVICGVPGAFTP 92          
BLAST of EWM20636.1 vs. NCBI_GenBank
Match: gi|929771746|ref|XP_014160806.1| (hypothetical protein SARC_00949 [Sphaeroforma arctica JP610] >gi|906958790|gb|KNC86904.1| hypothetical protein SARC_00949 [Sphaeroforma arctica JP610])

HSP 1 Score: 57.7658 bits (138), Expect = 5.121e-8
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 0
Query:   63 IEVGSKLPLTTTFQHLVDGKPTDVPALELFAGKKIVLVGVPGALTP 108
            ++VG K+P   TF+ + DG PTDVP  E+F GKK+V++GVPGA TP
Sbjct:   22 VKVGDKIP-AGTFKIIRDGAPTDVPTSEVFDGKKVVVLGVPGAFTP 66          
The following BLAST results are available for this feature:
BLAST of EWM20636.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585100430|gb|EWM20636.1|1.343e-69100.00thiol peroxidase, partial [Nannochloropsis gaditan... [more]
gi|219921373|emb|CAQ52405.1|2.295e-1160.42peroxyredoxin [Laminaria digitata][more]
gi|299471059|emb|CBN78919.1|1.395e-1056.36Peroxyredoxin [Ectocarpus siliculosus][more]
gi|929771746|ref|XP_014160806.1|5.121e-856.52hypothetical protein SARC_00949 [Sphaeroforma arct... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10067rna10067Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications