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Properties
| Property Name | Value |
|---|
| Product | Pre-rRNA-processing protein TSR2 |
| Orig transcript id | gnl|cribi|Naga_100228g2.4661.mrna |
| Orig protein id | gnl|cribi|Naga_100228g2.4661 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037261.1 | supercontig | KK037261.1:27186..29297 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna10060 ID=rna10060|Name=rna10060|organism=Nannochloropsis gaditana|type=mRNA|length=846bp
ATGAAAAAGCTCACAAAATTCAACAAGGACACCTTCGTCCTAGATCCTAC
TCGACCTCGGCTTGTGGACTTGCTGACAGAGGAGGAAGTACAACAATTCC
GTCGCATGCCGGTGAATTCCCGCCCAGTCTATTTGATCACTGAGATGAAC
CTGTTGGCCTACCGTATCCTGGGTCTATCAAAAGAAACCTCCATCAGGAT
CAATATTGACAACAAATTTCAGGAGGTCCTTGCTGGCTGGAATGGAATGC
TCCGGGTCGAAAACCTCCGCATTCCTTTCCCGTACACCCATGTCGTCAAT
CTCCTCACCTTCATCTTCGTCTTCGGAGCCCCTTTCATCTACACCTCCCG
CACGCAAAACTGGGCGGAAAATGACGTCCTTCTCTTCGCCTCCCTCCTCC
TCGGTGTCGCCTTTTACGGGCTTGAGGACATGGCCCGCAAGTGTCAGCAT
CCTTTAGGATGGGATCTAGAAGACCATGACTTGGAGATCTTTGGGGTCAG
GCTCAATCTTGACGGGCAAGAAATGGCCAAAATTTGCGGTGTACAGGAGC
CGATGGAATTCATGCCGTACTCCGAGCTCTTCGATGACCTTCCCGACTTC
TTTCAGGTCATGTCGTATAAGAGCTACTTGCAGACTACAAGCGTGTCTAT
GGAAGGGAAGATACCTCTCATCCCTCGACGGCCTGGAAAGAAAGGATCAA
GATGCATTTTTCGACGAAGTACAGTGAATAGCACACGATTTGATCTTTGT
AAATGGTTATCGAAGCATTGTAGGATCGTACCAAAAGAAAGTGACGTCCA
CTGTATGGAAAGAAATGCAAAATGCACTCTGGTTTGGGCTCAATAG back to topprotein sequence of rna10060 >rna10060-protein ID=rna10060-protein|Name=rna10060|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MDLSALPFFKSLESSRISCGYPGGSQTFKRKPPNVRKLCCQDTINKYERS
SEQQAVRMDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLL
EETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLE
EVSAWVCNLWEECKEGRREGVTKVCAQEAAVLRLQQRWSESGFESDEEGD
GGREEKAGRMIGKYRLFLCRAKDLGVTVCSLGLSFF back to topmRNA from alignment at KK037261.1:27186..29297- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna10060 ID=rna10060|Name=rna10060|organism=Nannochloropsis gaditana|type=mRNA|length=2112bp|location=Sequence derived from alignment at KK037261.1:27186..29297- (Nannochloropsis gaditana)
ATGGTAGGCCCCCTCTATTCCTTTTCAGGGTCCTCGGCAACGACCCGTCG
TCCGGTGCTTTCCATGTTTGCGGACGGCCATGCAAATTAAACATGAGCAG
TATACGTTCTATACCGACATACAGATATCCTCCTAAAAGTAAAGTGTACG
CATACAGGATCTAAGTGCACTCCCTTTTTTTAAATCGCTCGAAAGCTCAA
GGATAAGCTGTGGATACCCGGGTAAGGCAACATGACCATGGCCGCAGGAC
GCCTTCCTATTCTCGGGAAAAGTCCGCATTTTGTGCCCCACTGCGGATGG
TTGAAGGAAATGCCACCTTGGGAAGGGCTTGGATTCCTGAGGCATGTCTT
ATTAGTTCTCTGTGTTCATGGAAAATCACTGCGATTTAGATCACGGGTCA
GGAATCACTTGGGAGCCCCCCTCTCCATAATCCAGGAATAACCTTTATGC
CGGCACTCGAATGCGCTTACCTTCGACATGTCTAGTATCTTTTAGGCACA
AACACTCGTTACAAAAATCTATTTGAACATTTGAATTCTCTGATTCCTCC
TCTTGGCAGGAGGAAGCCAGACTTTTAAAAGGAAACCTCCCAATGTTCGC
AAACTTTGCTGCCAAGACACCATAAACAAGTACGAGCGATCAAGCGAGCA
GCAGGCCGTTAGAATGGACGAGGCTTGTTCCCTTTTCCGACAAGGCGTCA
CGTCAGTTTTTAAGCAGGTACCAAAGGAAGGAGGGCCTTGAGGAGAAAGG
GAAGGAGAGGGAAGGGAAGGGCAGGTGGGCCCACTTTGATTTGAACAATG
TTTGCCTCTGCGCGCGACAGGATTTCTCTAGTCCACTGGCTGTCATGTCA
GTGTGGAAAGACAATCTTCGGGCCAGGTCGTAGGACTCGAGGCAAAGGAT
CCCCATGGGGTACTTGCCATCCTCGCTTTAACCGCCTCCCCCCATCCCAT
CTCCCCTTCCCTTCCTTCCTGTATCCCAGTGGATGGTTCTCCACCTTGCC
GTGACCAATAATTGGGGTGGCGGCGACAGCTACCGAAAAGCCACCTTGCT
CTTGGAGGAAACCTTGCGCCTTTTCGTCCCTCCCCCCCTCGCTCGAACCG
CCCACCGACCCAAGAAACTCCCCACGCCTGAGGAACTCGAGGAAAAATTG
GGGGACTACATGGAGGAGGTGCGTGGACGCGTGAGGACCGTGGCCTGAGT
CTGCGGACTTTGTCCCTGGTGGAGGACCATAAGGGAGGAGACACTCGGAG
GTGGATGCCAGCCCCCACGTCTGTTTCCCCCCCTTTCGATATGCCGATAG
CGGGAGGGCAAGTAGCCTGTCTCTCACGCTTGGTTTTTCGTTGAATTCCC
TCTTTTCCTTCGAATGCACAGCAATTTGGAACGCTGGTGGAGGACGGGAG
CTTGGAAGAAGTGAGTGCCTGGGTGTGTAACCTCTGGGAGGAGTGCAAGG
AGGGAAGGAGGGAGGGGGTGACGAAGGTGTGCGCGCAGGAGGCCGCCGTG
CTGAGGCTGCAGCAGCGCTGGAGTGAGGTGAGCAGGGAGGCGAGCCGGAT
GGAGGAGGACGTGAGGAGGAGTCAGGAGGGGGAGGAAGAGTTGCGGGACG
AAGAGGAGGAGGGAGGAGGAATCGGGGGCCAGGCGAGTGGGGAGGAAGAC
GTAAGGGGGATGGAAGCGGAGGGAGGTGGTGAGGACGCGGGCAGCATGGA
GAACGGGGCAGGGGACGCACATGCTGGAGGGACGGAGGTGGAGGAGGAGG
AGGAGGAGGGTTGGACAGCGGTCAAACCGAAGAAAAAGGCGCCCAATCCC
CGGCAGCGTCGGAGAGAGCCCGGGTTATTCGGATAAAGTGGGGAAGAATG
GAGTTCTTGGGAGGCTTGGGGGGCTTTGGTGCTCAGGGCTTGGATTAGGG
CGGATAATGGCGGAGATGGGAACGGGAACGGCATGCGAGTCGGGAAAAAA
GGGGTGGAGGCACAGACCTAGTCAGGGTTCGAGAGTGACGAGGAAGGCGA
TGGAGGGAGGGAGGAAAAGGCGGGAAGAATGATCGGAAAGTATCGATTGT
TTTTGTGTCGTGCGAAGGACCTTGGAGTGACCGTGTGCTCATTAGGATTG
AGCTTTTTTTAA back to topCoding sequence (CDS) from alignment at KK037261.1:27186..29297- >rna10060 ID=rna10060|Name=rna10060|organism=Nannochloropsis gaditana|type=CDS|length=4266bp|location=Sequence derived from alignment at KK037261.1:27186..29297- (Nannochloropsis gaditana)
TCAGGGTTCGAGAGTGACGAGGAAGGCGATGGAGGGAGGGAGGAAAAGGC
GGGAAGAATGATCGGAAAGTATCGATTGTTTTTGTGTCGTGCGAAGGACC
TTGGAGTGACCGTGTGCTCATTAGGATTGAGCTTTTTTTAACAATTTGGA
ACGCTGGTGGAGGACGGGAGCTTGGAAGAAGTGAGTGCCTGGGTGTGTAA
CCTCTGGGAGGAGTGCAAGGAGGGAAGGAGGGAGGGGGTGACGAAGGTGT
GCGCGCAGGAGGCCGCCGTGCTGAGGCTGCAGCAGCGCTGGAGTGAGTGG
ATGGTTCTCCACCTTGCCGTGACCAATAATTGGGGTGGCGGCGACAGCTA
CCGAAAAGCCACCTTGCTCTTGGAGGAAACCTTGCGCCTTTTCGTCCCTC
CCCCCCTCGCTCGAACCGCCCACCGACCCAAGAAACTCCCCACGCCTGAG
GAACTCGAGGAAAAATTGGGGGACTACATGGAGGAGGAGGAAGCCAGACT
TTTAAAAGGAAACCTCCCAATGTTCGCAAACTTTGCTGCCAAGACACCAT
AAACAAGTACGAGCGATCAAGCGAGCAGCAGGCCGTTAGAATGGACGAGG
CTTGTTCCCTTTTCCGACAAGGCGTCACGTCAGTTTTTAAGCAGGATCTA
AGTGCACTCCCTTTTTTTAAATCGCTCGAAAGCTCAAGGATAAGCTGTGG
ATACCCGGATGTCAGGGTTCGAGAGTGACGAGGAAGGCGATGGAGGGAGG
GAGGAAAAGGCGGGAAGAATGATCGGAAAGTATCGATTGTTTTTGTGTCG
TGCGAAGGACCTTGGAGTGACCGTGTGCTCATTAGGATTGAGCTTTTTTT
AACAATTTGGAACGCTGGTGGAGGACGGGAGCTTGGAAGAAGTGAGTGCC
TGGGTGTGTAACCTCTGGGAGGAGTGCAAGGAGGGAAGGAGGGAGGGGGT
GACGAAGGTGTGCGCGCAGGAGGCCGCCGTGCTGAGGCTGCAGCAGCGCT
GGAGTGAGTGGATGGTTCTCCACCTTGCCGTGACCAATAATTGGGGTGGC
GGCGACAGCTACCGAAAAGCCACCTTGCTCTTGGAGGAAACCTTGCGCCT
TTTCGTCCCTCCCCCCCTCGCTCGAACCGCCCACCGACCCAAGAAACTCC
CCACGCCTGAGGAACTCGAGGAAAAATTGGGGGACTACATGGAGGAGGAG
GAAGCCAGACTTTTAAAAGGAAACCTCCCAATGTTCGCAAACTTTGCTGC
CAAGACACCATAAACAAGTACGAGCGATCAAGCGAGCAGCAGGCCGTTAG
AATGGACGAGGCTTGTTCCCTTTTCCGACAAGGCGTCACGTCAGTTTTTA
AGCAGGATCTAAGTGCACTCCCTTTTTTTAAATCGCTCGAAAGCTCAAGG
ATAAGCTGTGGATACCCGGATGTCAGGGTTCGAGAGTGACGAGGAAGGCG
ATGGAGGGAGGGAGGAAAAGGCGGGAAGAATGATCGGAAAGTATCGATTG
TTTTTGTGTCGTGCGAAGGACCTTGGAGTGACCGTGTGCTCATTAGGATT
GAGCTTTTTTTAACAATTTGGAACGCTGGTGGAGGACGGGAGCTTGGAAG
AAGTGAGTGCCTGGGTGTGTAACCTCTGGGAGGAGTGCAAGGAGGGAAGG
AGGGAGGGGGTGACGAAGGTGTGCGCGCAGGAGGCCGCCGTGCTGAGGCT
GCAGCAGCGCTGGAGTGAGTGGATGGTTCTCCACCTTGCCGTGACCAATA
ATTGGGGTGGCGGCGACAGCTACCGAAAAGCCACCTTGCTCTTGGAGGAA
ACCTTGCGCCTTTTCGTCCCTCCCCCCCTCGCTCGAACCGCCCACCGACC
CAAGAAACTCCCCACGCCTGAGGAACTCGAGGAAAAATTGGGGGACTACA
TGGAGGAGGAGGAAGCCAGACTTTTAAAAGGAAACCTCCCAATGTTCGCA
AACTTTGCTGCCAAGACACCATAAACAAGTACGAGCGATCAAGCGAGCAG
CAGGCCGTTAGAATGGACGAGGCTTGTTCCCTTTTCCGACAAGGCGTCAC
GTCAGTTTTTAAGCAGGATCTAAGTGCACTCCCTTTTTTTAAATCGCTCG
AAAGCTCAAGGATAAGCTGTGGATACCCGGATGTCAGGGTTCGAGAGTGA
CGAGGAAGGCGATGGAGGGAGGGAGGAAAAGGCGGGAAGAATGATCGGAA
AGTATCGATTGTTTTTGTGTCGTGCGAAGGACCTTGGAGTGACCGTGTGC
TCATTAGGATTGAGCTTTTTTTAACAATTTGGAACGCTGGTGGAGGACGG
GAGCTTGGAAGAAGTGAGTGCCTGGGTGTGTAACCTCTGGGAGGAGTGCA
AGGAGGGAAGGAGGGAGGGGGTGACGAAGGTGTGCGCGCAGGAGGCCGCC
GTGCTGAGGCTGCAGCAGCGCTGGAGTGAGTGGATGGTTCTCCACCTTGC
CGTGACCAATAATTGGGGTGGCGGCGACAGCTACCGAAAAGCCACCTTGC
TCTTGGAGGAAACCTTGCGCCTTTTCGTCCCTCCCCCCCTCGCTCGAACC
GCCCACCGACCCAAGAAACTCCCCACGCCTGAGGAACTCGAGGAAAAATT
GGGGGACTACATGGAGGAGGAGGAAGCCAGACTTTTAAAAGGAAACCTCC
CAATGTTCGCAAACTTTGCTGCCAAGACACCATAAACAAGTACGAGCGAT
CAAGCGAGCAGCAGGCCGTTAGAATGGACGAGGCTTGTTCCCTTTTCCGA
CAAGGCGTCACGTCAGTTTTTAAGCAGGATCTAAGTGCACTCCCTTTTTT
TAAATCGCTCGAAAGCTCAAGGATAAGCTGTGGATACCCGGATGTCAGGG
TTCGAGAGTGACGAGGAAGGCGATGGAGGGAGGGAGGAAAAGGCGGGAAG
AATGATCGGAAAGTATCGATTGTTTTTGTGTCGTGCGAAGGACCTTGGAG
TGACCGTGTGCTCATTAGGATTGAGCTTTTTTTAACAATTTGGAACGCTG
GTGGAGGACGGGAGCTTGGAAGAAGTGAGTGCCTGGGTGTGTAACCTCTG
GGAGGAGTGCAAGGAGGGAAGGAGGGAGGGGGTGACGAAGGTGTGCGCGC
AGGAGGCCGCCGTGCTGAGGCTGCAGCAGCGCTGGAGTGAGTGGATGGTT
CTCCACCTTGCCGTGACCAATAATTGGGGTGGCGGCGACAGCTACCGAAA
AGCCACCTTGCTCTTGGAGGAAACCTTGCGCCTTTTCGTCCCTCCCCCCC
TCGCTCGAACCGCCCACCGACCCAAGAAACTCCCCACGCCTGAGGAACTC
GAGGAAAAATTGGGGGACTACATGGAGGAGGAGGAAGCCAGACTTTTAAA
AGGAAACCTCCCAATGTTCGCAAACTTTGCTGCCAAGACACCATAAACAA
GTACGAGCGATCAAGCGAGCAGCAGGCCGTTAGAATGGACGAGGCTTGTT
CCCTTTTCCGACAAGGCGTCACGTCAGTTTTTAAGCAGGATCTAAGTGCA
CTCCCTTTTTTTAAATCGCTCGAAAGCTCAAGGATAAGCTGTGGATACCC
GGATGTCAGGGTTCGAGAGTGACGAGGAAGGCGATGGAGGGAGGGAGGAA
AAGGCGGGAAGAATGATCGGAAAGTATCGATTGTTTTTGTGTCGTGCGAA
GGACCTTGGAGTGACCGTGTGCTCATTAGGATTGAGCTTTTTTTAACAAT
TTGGAACGCTGGTGGAGGACGGGAGCTTGGAAGAAGTGAGTGCCTGGGTG
TGTAACCTCTGGGAGGAGTGCAAGGAGGGAAGGAGGGAGGGGGTGACGAA
GGTGTGCGCGCAGGAGGCCGCCGTGCTGAGGCTGCAGCAGCGCTGGAGTG
AGTGGATGGTTCTCCACCTTGCCGTGACCAATAATTGGGGTGGCGGCGAC
AGCTACCGAAAAGCCACCTTGCTCTTGGAGGAAACCTTGCGCCTTTTCGT
CCCTCCCCCCCTCGCTCGAACCGCCCACCGACCCAAGAAACTCCCCACGC
CTGAGGAACTCGAGGAAAAATTGGGGGACTACATGGAGGAGGAGGAAGCC
AGACTTTTAAAAGGAAACCTCCCAATGTTCGCAAACTTTGCTGCCAAGAC
ACCATAAACAAGTACGAGCGATCAAGCGAGCAGCAGGCCGTTAGAATGGA
CGAGGCTTGTTCCCTTTTCCGACAAGGCGTCACGTCAGTTTTTAAGCAGG
ATCTAAGTGCACTCCCTTTTTTTAAATCGCTCGAAAGCTCAAGGATAAGC
TGTGGATACCCGGATG back to top
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