EWM20644.1, cds10029 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|585100442|gb|EWM20644.1| (Pre-rRNA-processing protein TSR2 [Nannochloropsis gaditana]) HSP 1 Score: 485.337 bits (1248), Expect = 2.057e-173 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0 Query: 1 MDLSALPFFKSLESSRISCGYPGGSQTFKRKPPNVRKLCCQDTINKYERSSEQQAVRMDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQEAAVLRLQQRWSESGFESDEEGDGGREEKAGRMIGKYRLFLCRAKDLGVTVCSLGLSFF 236 MDLSALPFFKSLESSRISCGYPGGSQTFKRKPPNVRKLCCQDTINKYERSSEQQAVRMDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQEAAVLRLQQRWSESGFESDEEGDGGREEKAGRMIGKYRLFLCRAKDLGVTVCSLGLSFF Sbjct: 1 MDLSALPFFKSLESSRISCGYPGGSQTFKRKPPNVRKLCCQDTINKYERSSEQQAVRMDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQEAAVLRLQQRWSESGFESDEEGDGGREEKAGRMIGKYRLFLCRAKDLGVTVCSLGLSFF 236
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|553189765|ref|XP_005855069.1| (dt1p1a10l protein [Nannochloropsis gaditana CCMP526] >gi|422293992|gb|EKU21292.1| dt1p1a10l protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 242.276 bits (617), Expect = 4.387e-79 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 Query: 58 MDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKV 174 MDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKV Sbjct: 1 MDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKV 117
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|902112055|gb|KNA03795.1| (hypothetical protein SOVF_205590 [Spinacia oleracea]) HSP 1 Score: 80.1073 bits (196), Expect = 8.651e-15 Identity = 52/162 (32.10%), Postives = 84/162 (51.85%), Query Frame = 0 Query: 61 ACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPT-PEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQEA-AVLRLQQRWSESGFESDE-EGDGGREEKAGRMIGKYRLFLC 219 A F++G++ VF +W L +AV N WGG DS+ K+ + F P +K P ++LEE+L + + F T +DGS+EEV+ + ++EEC EG + + K+ ++ VLR++Q S+S DE E G +E + M+ FL Sbjct: 14 AIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKP--------NRKEPIYIDDLEEELNVGL-DSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMKSQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLS 166
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|168020137|ref|XP_001762600.1| (predicted protein [Physcomitrella patens] >gi|162686333|gb|EDQ72723.1| predicted protein, partial [Physcomitrella patens]) HSP 1 Score: 77.7962 bits (190), Expect = 9.545e-15 Identity = 47/117 (40.17%), Postives = 61/117 (52.14%), Query Frame = 0 Query: 60 EACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCA 176 EA S+F GV S F +W L LA+ N WGG +S +KA L + L FV + R +ELEE L D M EQF ED S++EV+ + L EEC +G E V + A Sbjct: 4 EAISMFASGVHSCFLRWTALQLAIENEWGGRNSSQKAAQLENDILAWFVHSKVRRYI---------DELEELLDDTMIEQFSMQTEDDSIQEVAEQLFILHEECSQGNYETVRSLAA 111
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|299117407|emb|CBN73910.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 75.0998 bits (183), Expect = 4.481e-13 Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = 0 Query: 58 MDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEEC 163 + +A F+ GV S QW L LAV NNWGGGDS RKA LL E + +F + KK +E+E L D++++ F T ED S +V+ + ++ +C Sbjct: 4 LQDAWGNFQGGVKSALNQWTALRLAVENNWGGGDSERKAALLEEGVMNMF----------KTKKEIYKDEVENFLADFLDDNFSTYAEDDSPAQVAMMLVEMFSQC 99
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|953503286|emb|CEG36054.1| (Uncharacterized conserved protein [Plasmopara halstedii]) HSP 1 Score: 75.0998 bits (183), Expect = 6.868e-13 Identity = 42/150 (28.00%), Postives = 76/150 (50.67%), Query Frame = 0 Query: 48 ERSSEQQAVRMDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQEAAVLRLQQRWSESGFESDE 197 E S + A + F V V +W L +A+ WGGGD+ RK +LLEE L +F + K + + + +G Y+E +FG + EDGS+EE+S + L +ECK+ + + V + Q +++ + + ++ ++D+ Sbjct: 11 EHSEQFAAGAIKSPWDYFEYSVKLVLARWTALRMAIEGEWGGGDTRRKYEILLEEILNVF----------KYNKTVYADAMSDNIGGYVESEFGLICEDGSVEEISTLLTVLADECKKAQYDRVKAMHEQVQSLIPIDLKAAKVRTQNDD 150
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|1173950427|gb|OQR98388.1| (hypothetical protein THRCLA_06723 [Thraustotheca clavata]) HSP 1 Score: 74.7146 bits (182), Expect = 7.796e-13 Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 0 Query: 65 FRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEG 166 F G +W L +A+ WGGGD RK +LLEE L LF + +KL ++L + DY+E +FG + EDGS++EVS +C EECK+G Sbjct: 22 FELGAKLALARWTALRMAMEGEWGGGDMKRKFEILLEEILHLF----------KYQKLVQYDDLAVNIEDYIESEFGLVCEDGSVDEVSKILCACAEECKQG 113
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|669159394|ref|XP_008615259.1| (hypothetical protein SDRG_11017 [Saprolegnia diclina VS20] >gi|530733176|gb|EQC31418.1| hypothetical protein SDRG_11017 [Saprolegnia diclina VS20]) HSP 1 Score: 74.7146 bits (182), Expect = 8.536e-13 Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 0 Query: 65 FRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQ 177 F GV +W L +A+ WGGGD RK +LLEE L LF + +K ++L + DY+E +FG + EDGS++EV+ +C EECK+G+ E + ++ Q Sbjct: 22 FELGVKLTLARWTALRMAMEGEWGGGDMKRKCEILLEEILHLF----------KYQKQVLFDDLAVNIEDYIESEFGLVCEDGSVDEVAKVLCACAEECKQGQIERIRQLKEQ 124
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|813119189|ref|XP_012196186.1| (hypothetical protein SPRG_02247 [Saprolegnia parasitica CBS 223.65] >gi|641539631|gb|KDO33440.1| hypothetical protein SPRG_02247 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 74.3294 bits (181), Expect = 8.894e-13 Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 0 Query: 65 FRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQ 177 F GV +W L +A+ WGGGD RK +LLEE L LF + +K ++L + DY+E +FG + EDGS++EV+ +C EECK+G+ E + ++ Q Sbjct: 22 FELGVKLTLARWTALRMAMEGEWGGGDMKRKCEILLEEILHLF----------KYQKQVLFDDLAVNIEDYIESEFGLVCEDGSVDEVAKVLCACAEECKQGQIERIRQLKEQ 124
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|762157190|ref|XP_011416744.1| (PREDICTED: pre-rRNA-processing protein TSR2 homolog [Crassostrea gigas]) HSP 1 Score: 73.9442 bits (180), Expect = 1.422e-12 Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 0 Query: 63 SLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGR 167 ++F V +VF W VL LAVT +GG DS KA ++ + F R K E+E+ L D M +F T+VEDGSL ++S+ +C +++ C+EG+ Sbjct: 7 TMFPAAVATVFDSWTVLQLAVTQGFGGADSREKAEWMITAVDQWF----------RENKDIDDYEVEDFLADIMNTEFDTIVEDGSLSQISSLICRIYKLCREGK 101 The following BLAST results are available for this feature:
BLAST of EWM20644.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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