EWM20644.1, cds10029 (CDS) Nannochloropsis gaditana

Overview
NameEWM20644.1
Unique Namecds10029
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:29295..29297 -
Alignment locationKK037261.1:29077..29140 -
Alignment locationKK037261.1:28581..28738 -
Alignment locationKK037261.1:28130..28318 -
Alignment locationKK037261.1:27771..27926 -
Alignment locationKK037261.1:27186..27326 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20644.1
ProductPre-rRNA-processing protein TSR2
Orig transcript idgnl|cribi|Naga_100228g2.4661.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:29295..29297 -
KK037261.1supercontigKK037261.1:29077..29140 -
KK037261.1supercontigKK037261.1:28581..28738 -
KK037261.1supercontigKK037261.1:28130..28318 -
KK037261.1supercontigKK037261.1:27771..27926 -
KK037261.1supercontigKK037261.1:27186..27326 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019398Pre-rRNA_process_TSR2
Homology
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|585100442|gb|EWM20644.1| (Pre-rRNA-processing protein TSR2 [Nannochloropsis gaditana])

HSP 1 Score: 485.337 bits (1248), Expect = 2.057e-173
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query:    1 MDLSALPFFKSLESSRISCGYPGGSQTFKRKPPNVRKLCCQDTINKYERSSEQQAVRMDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQEAAVLRLQQRWSESGFESDEEGDGGREEKAGRMIGKYRLFLCRAKDLGVTVCSLGLSFF 236
            MDLSALPFFKSLESSRISCGYPGGSQTFKRKPPNVRKLCCQDTINKYERSSEQQAVRMDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQEAAVLRLQQRWSESGFESDEEGDGGREEKAGRMIGKYRLFLCRAKDLGVTVCSLGLSFF
Sbjct:    1 MDLSALPFFKSLESSRISCGYPGGSQTFKRKPPNVRKLCCQDTINKYERSSEQQAVRMDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQEAAVLRLQQRWSESGFESDEEGDGGREEKAGRMIGKYRLFLCRAKDLGVTVCSLGLSFF 236          
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|553189765|ref|XP_005855069.1| (dt1p1a10l protein [Nannochloropsis gaditana CCMP526] >gi|422293992|gb|EKU21292.1| dt1p1a10l protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 242.276 bits (617), Expect = 4.387e-79
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
Query:   58 MDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKV 174
            MDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKV
Sbjct:    1 MDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKV 117          
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|902112055|gb|KNA03795.1| (hypothetical protein SOVF_205590 [Spinacia oleracea])

HSP 1 Score: 80.1073 bits (196), Expect = 8.651e-15
Identity = 52/162 (32.10%), Postives = 84/162 (51.85%), Query Frame = 0
Query:   61 ACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPT-PEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQEA-AVLRLQQRWSESGFESDE-EGDGGREEKAGRMIGKYRLFLC 219
            A   F++G++ VF +W  L +AV N WGG DS+ K+     +    F  P         +K P   ++LEE+L   + + F T  +DGS+EEV+  +  ++EEC EG  + + K+   ++  VLR++Q  S+S    DE E   G +E +  M+     FL 
Sbjct:   14 AIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKP--------NRKEPIYIDDLEEELNVGL-DSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMKSQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLS 166          
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|168020137|ref|XP_001762600.1| (predicted protein [Physcomitrella patens] >gi|162686333|gb|EDQ72723.1| predicted protein, partial [Physcomitrella patens])

HSP 1 Score: 77.7962 bits (190), Expect = 9.545e-15
Identity = 47/117 (40.17%), Postives = 61/117 (52.14%), Query Frame = 0
Query:   60 EACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCA 176
            EA S+F  GV S F +W  L LA+ N WGG +S +KA  L  + L  FV   + R           +ELEE L D M EQF    ED S++EV+  +  L EEC +G  E V  + A
Sbjct:    4 EAISMFASGVHSCFLRWTALQLAIENEWGGRNSSQKAAQLENDILAWFVHSKVRRYI---------DELEELLDDTMIEQFSMQTEDDSIQEVAEQLFILHEECSQGNYETVRSLAA 111          
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|299117407|emb|CBN73910.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.0998 bits (183), Expect = 4.481e-13
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = 0
Query:   58 MDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEEC 163
            + +A   F+ GV S   QW  L LAV NNWGGGDS RKA LL E  + +F          + KK    +E+E  L D++++ F T  ED S  +V+  +  ++ +C
Sbjct:    4 LQDAWGNFQGGVKSALNQWTALRLAVENNWGGGDSERKAALLEEGVMNMF----------KTKKEIYKDEVENFLADFLDDNFSTYAEDDSPAQVAMMLVEMFSQC 99          
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|953503286|emb|CEG36054.1| (Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 75.0998 bits (183), Expect = 6.868e-13
Identity = 42/150 (28.00%), Postives = 76/150 (50.67%), Query Frame = 0
Query:   48 ERSSEQQAVRMDEACSLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQEAAVLRLQQRWSESGFESDE 197
            E S +  A  +      F   V  V  +W  L +A+   WGGGD+ RK  +LLEE L +F          +  K    + + + +G Y+E +FG + EDGS+EE+S  +  L +ECK+ + + V  +  Q  +++ +  + ++   ++D+
Sbjct:   11 EHSEQFAAGAIKSPWDYFEYSVKLVLARWTALRMAIEGEWGGGDTRRKYEILLEEILNVF----------KYNKTVYADAMSDNIGGYVESEFGLICEDGSVEEISTLLTVLADECKKAQYDRVKAMHEQVQSLIPIDLKAAKVRTQNDD 150          
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|1173950427|gb|OQR98388.1| (hypothetical protein THRCLA_06723 [Thraustotheca clavata])

HSP 1 Score: 74.7146 bits (182), Expect = 7.796e-13
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 0
Query:   65 FRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEG 166
            F  G      +W  L +A+   WGGGD  RK  +LLEE L LF          + +KL   ++L   + DY+E +FG + EDGS++EVS  +C   EECK+G
Sbjct:   22 FELGAKLALARWTALRMAMEGEWGGGDMKRKFEILLEEILHLF----------KYQKLVQYDDLAVNIEDYIESEFGLVCEDGSVDEVSKILCACAEECKQG 113          
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|669159394|ref|XP_008615259.1| (hypothetical protein SDRG_11017 [Saprolegnia diclina VS20] >gi|530733176|gb|EQC31418.1| hypothetical protein SDRG_11017 [Saprolegnia diclina VS20])

HSP 1 Score: 74.7146 bits (182), Expect = 8.536e-13
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 0
Query:   65 FRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQ 177
            F  GV     +W  L +A+   WGGGD  RK  +LLEE L LF          + +K    ++L   + DY+E +FG + EDGS++EV+  +C   EECK+G+ E + ++  Q
Sbjct:   22 FELGVKLTLARWTALRMAMEGEWGGGDMKRKCEILLEEILHLF----------KYQKQVLFDDLAVNIEDYIESEFGLVCEDGSVDEVAKVLCACAEECKQGQIERIRQLKEQ 124          
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|813119189|ref|XP_012196186.1| (hypothetical protein SPRG_02247 [Saprolegnia parasitica CBS 223.65] >gi|641539631|gb|KDO33440.1| hypothetical protein SPRG_02247 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 74.3294 bits (181), Expect = 8.894e-13
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 0
Query:   65 FRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGRREGVTKVCAQ 177
            F  GV     +W  L +A+   WGGGD  RK  +LLEE L LF          + +K    ++L   + DY+E +FG + EDGS++EV+  +C   EECK+G+ E + ++  Q
Sbjct:   22 FELGVKLTLARWTALRMAMEGEWGGGDMKRKCEILLEEILHLF----------KYQKQVLFDDLAVNIEDYIESEFGLVCEDGSVDEVAKVLCACAEECKQGQIERIRQLKEQ 124          
BLAST of EWM20644.1 vs. NCBI_GenBank
Match: gi|762157190|ref|XP_011416744.1| (PREDICTED: pre-rRNA-processing protein TSR2 homolog [Crassostrea gigas])

HSP 1 Score: 73.9442 bits (180), Expect = 1.422e-12
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 0
Query:   63 SLFRQGVTSVFKQWMVLHLAVTNNWGGGDSYRKATLLLEETLRLFVPPPLARTAHRPKKLPTPEELEEKLGDYMEEQFGTLVEDGSLEEVSAWVCNLWEECKEGR 167
            ++F   V +VF  W VL LAVT  +GG DS  KA  ++    + F          R  K     E+E+ L D M  +F T+VEDGSL ++S+ +C +++ C+EG+
Sbjct:    7 TMFPAAVATVFDSWTVLQLAVTQGFGGADSREKAEWMITAVDQWF----------RENKDIDDYEVEDFLADIMNTEFDTIVEDGSLSQISSLICRIYKLCREGK 101          
The following BLAST results are available for this feature:
BLAST of EWM20644.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100442|gb|EWM20644.1|2.057e-173100.00Pre-rRNA-processing protein TSR2 [Nannochloropsis ... [more]
gi|553189765|ref|XP_005855069.1|4.387e-79100.00dt1p1a10l protein [Nannochloropsis gaditana CCMP52... [more]
gi|902112055|gb|KNA03795.1|8.651e-1532.10hypothetical protein SOVF_205590 [Spinacia olerace... [more]
gi|168020137|ref|XP_001762600.1|9.545e-1540.17predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|299117407|emb|CBN73910.1|4.481e-1336.79conserved unknown protein [Ectocarpus siliculosus][more]
gi|953503286|emb|CEG36054.1|6.868e-1328.00Uncharacterized conserved protein [Plasmopara hals... [more]
gi|1173950427|gb|OQR98388.1|7.796e-1339.22hypothetical protein THRCLA_06723 [Thraustotheca c... [more]
gi|669159394|ref|XP_008615259.1|8.536e-1336.28hypothetical protein SDRG_11017 [Saprolegnia dicli... [more]
gi|813119189|ref|XP_012196186.1|8.894e-1336.28hypothetical protein SPRG_02247 [Saprolegnia paras... [more]
gi|762157190|ref|XP_011416744.1|1.422e-1236.19PREDICTED: pre-rRNA-processing protein TSR2 homolo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10060rna10060Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications