rna1006, rna1006 (mRNA) Nannochloropsis gaditana

Overview
Namerna1006
Unique Namerna1006
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2169
Alignment locationCM002456.1:945716..947221 +

Link to JBrowse

Properties
Property NameValue
ProductKua-ubiquitin conjugating enzyme hybrid, localization
Orig transcript idgnl|cribi|Naga_100112g14.5453.mrna
Orig protein idgnl|cribi|Naga_100112g14.5453
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:945716..947221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100112g14gene969Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1006rna1006-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29670.1cds1005Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1006 ID=rna1006|Name=rna1006|organism=Nannochloropsis gaditana|type=mRNA|length=2169bp
AGCCTAAATCGGCTGGAAAACGTGCATATTTAATCGATGGACACCACCTT
ACCTCTGGGTGGCTTTTCTCACAGGCATCTGATTCAGGAGCACTTATTTT
TGTTCCAGGGCCGTGCGATGTTCTCGCTCACCCAGACGTTAAGATCTGCC
ACGCATGCGCGAATATAAAGCTTACGACACTAAGCAAAAGCACCCCACAA
ATTGCACAGATTTCAATGCCTGAAGGCCGTGGACGTACCACAGATTAGTC
GCCTCCAATATTTTGCGGAGCAAGACGGATTTATCGCATCGTCACGACAA
AATGTCAGGTTCTAGGTGTCGACCGAGTTCCTTCACAACCTCCTCCGTTG
TCCTGTCCCTGAATTTTCTGATTCATTTTCTGTGGACGAGCTTCACGACA
GCTCGTGCTGTTTCACAATTATATTGCTCTAGTAGCGAAGGGTTTGTTGC
CTTACATCGGAACAGAGTCGTCTCTCCCTTCGCGTTTCAAGTATCTCAAC
CCCGAGCAGCATTGCTCTCTCGACAGATCCGCGCTCGGCTCGGTCTCAAT
GCCCCAGTAAACGTGCGATACACTTGTAAATCCACTGAGAAGACAAGAAT
GAAAAATAGTAATTCCCCTTATGAATCGTCGACTTCGATCTTAACCTCCC
TGTTTAAATCTAAGCCTTCCCAGGGCGGGAACGACAGATCCCTTGGCAAG
GGGAGAAGGGAAGGAAGAGGTGTGAGGCAAGTTCGGTCCTATTTCAAGTT
TTGGAATCAGCGTCGCATGAGTGAAGCTGTCGACCTTTTTACGGAAGACT
GCTCGTACGAAGATACGTTGTATCCCGGCGCCTTCCGGGGGAAGGAGGCC
TTGAAGGCCCACTTGTTTCGCGTGGCTGACGCTTTGCCCGACTCGTTTGC
CTTCGTCTTAGACGAGGTGAGTGACGGCGACGACGTGGTTGGCGTGCAGT
GGCACGTCGAGTCCGAGGGTAAGCAGCTCCCTTTTACGCGAGGGTCCTCC
ATCTACAAGCTGGATCGGGTGTCGGGGAAGCTATGCTCCGGTTTCGACGT
CCCCGAGCCCACGGTTAAGAGCGGAAGCGCCAGTCTGGCGGTCCTCTCCC
TTATCGGGCGCCTCCTCGACGAGCCTCGCAAGGCGGTACCTTTAGCTGCA
TTCATCTTCTATTGCTGGTTCGTTTTCCTCAGCACCGTGGCCCCGGGACC
CAACGCCTTGAGCTTGGATCCTGCCACATGGGCGGAGGTGCGAGACTTGT
CCTTGAATTTCTGGCTTGTCATGCCCTCCTTGGCACCCCAGTCCTCACCT
GTTCTACATCCCTGCTTGGAAGGGCTTTTCAATTTGTTGCTGGCATGGGC
CGCGCTTTTCAGTGGTTTTATGGTCGATGGGAAGGTGGCCGGCGAGAGCA
CCCAGGCAAGGAAAACGGGAGAGGGGAGAGGGGGGGCGAAGAATGCCTTC
CTGCCCTACGTTTTGGGAATGCAGCTTTTGACGAACGCGGTCTATTTACC
GTATTTGGTTCTGCGTAAAAATGTCTGGAAGCCAGCAGACGAACCGGCAG
GGGAGGGGTATACGCTGACGAAAGCCGAGGCCTTGGGCGAGTCCAAGATC
CCACCATTAGTCTTTATCGGAGTGGGACTTCTTTCTTTGGCGTGGGCAGG
TTTGGCACGCGGAGAGGTGTACGGAGTGGAATTGAGCGAACGATGGAGAA
GTTTTGTCCAAATACTCACTACGGACAGGTTGACCTTCAGCTTTGCGGTA
GATTTGCTCTATTTCTGGGTTTTTCAAGGCTGGCTTTTGGACGACGACAT
TGAAAGACGAGGGGGCGAGGTCGGAAAAATCAGCTTGAGCTTGTTTAAGG
CGATACCTTTCCTGGGACTGGGGGCATACCTGATGACGCGGCCGCCGCTA
TTACTGGGGGGTGAGCGTGGTAGTGTGAAGGAAGAGGTCTGAGACATGGG
AGATCCATGAAAGTCAAGACCTTTATTTATAGACAAATTTTGTGTCGTTA
TGTGATTCCTGCAGGCTGCCTGATAGCATGTCCTTGCCTGAAGATGTGCG
CCTGGAGGCATGCGGGCCGTTAGCGCCCTCCCAGATATGACCAGAGCACC
TGTCTCCGGGAAAGACCTCAAAGCCCACCGCGCTATATCATTCTGCCCTT
CAAACAACTTTGTTCTAGA
back to top

protein sequence of rna1006

>rna1006-protein ID=rna1006-protein|Name=rna1006|organism=Nannochloropsis gaditana|type=polypeptide|length=304bp
MCVSARSETATPPAAVSDTSASGSIKRYYDNAGLGRQDGDAIDQLNAFMT
KQAHKVWSPDNEDYKVYEMVRQGHVVFKRRCMPLLYFYWATILVGLLRAP
SLLFLAGALASTYFYMELYSAVLHIVLDNPAFIKVPGLDQPVFEFLAHHI
LPVEIAQRRYRDICGDLNVIVGLIFAINLLLFDWMKDGRVMCVVAAGGAM
AYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAI
LGGWSEGLITTLYHHVVPSQYVWLALFAVMTVFGLAGVVKIYIPAYDAFV
AFVQ
back to top

mRNA from alignment at CM002456.1:945716..947221+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1006 ID=rna1006|Name=rna1006|organism=Nannochloropsis gaditana|type=mRNA|length=1506bp|location=Sequence derived from alignment at CM002456.1:945716..947221+ (Nannochloropsis gaditana)
ACCTTCATCTTTGAAGCAGTTCGCCAGGGACATGTAAATGCACTTATAAA
ACATCAAAACCCTCGGGATTTGAGCTTTTGAGACTGGCTTAATGGTCGTC
TTTGTCGCTTACGGaatacctcctccccgccccggcacGAAGTTTTCCCG
CAGGCCCGCCCGTCGCCATTGTTGCATAGTAACAACATTATGTGTGTCAG
CGCGCGTTCGGAGACAGCCACTCCGCCAGCTGCTGTGTCCGATACTAGTG
CAAGTGGTAGCATCAAACGTTACTATGACAATGCTGGGCTCGGTCGTCAG
GATGGGGACGCAATAGACCAACTGAATGCATTTATGACTAAGCAAGCGCA
CAAGGTCTGGAGTCCGGACAACGAGGACTACAAAGTGTACGAAATGGTGC
GCCAGGGACACGTGGTCTTCAAGAGGCGGTGCATGCCGTTGCTTTATTTC
TACTGGGCCACCATTCTGGTCGGGCTGCTTCGAGCCCCGTCTCTACTGTT
CTTGGCGGGGGCCTTGGCTTCCACGTACTTCTATATGGAACTGTACAGCG
CTGTTTTGCACATTGTGTTGGACAATCCGGCCTTTATAAAAGTACCCGGC
TTAGACCAGCCTGTTTTTGAGTTCTTAGCGCATCATATATTGCCCGTGGA
AATCGCGCAGAGACGGTATCGAGACATTTGCGGTGACTTGAACGTGATCG
TGGGCCTCATCTTCGCGATCAATCTGCTTCTCTTTGATTGGATGAAAGAC
GGGCGTGTCATGTGCGTTGTCGCCGCGGGTGGCGCCATGGCATACTTGGG
CCAGTTCGCTCACCGGCAGGCGCACATGCCCCCCTCGAAAGTGAGCCCCT
TTGCCCGCGCCTTGCAGGACGCGGGCCTCCTGGTCTCCCCGCACTTGCAC
CGCGCGCACCACCGCACGTACGACCGGGGGTTTGCCATCCTGGGGGGTTG
GTCCGAGGGCTTGATCACAACGCTCTACCACCACGTGGTCCCGTCCCAGT
ACGTGTGGCTGGCCTTGTTCGCTGTCATGACAGTGTTCGGGCTGGCGGGC
GTGGTGAAGATATACATCCCTGCCTACGACGCTTTCGTAGCTTTCGTGCA
GTAACGAGTCGCTGAGTGGAATGCAGGGGATGTCGATGGACCTTGATGGG
TGGGGATCTGACGTCGTGCGCGGGGATATCCGGCACGAGCAGCTAGCGAT
TGGTGAGAAAGGTGTGAAATTTACTGTAGACTCTGCACAGTCAGCAATGG
GAAAAGAAGTACAGGATTTGACTAAGCTGTTGATAGGAAAGCGACGGGTG
ACACTACCGGAGGCTGAAAGACATCGCTTTCCATAAGACTGGAGAAAGTA
GGTGACCGTGGCATCGAAAGACTCTCTCGTTCGGGAGCATAGTTTGGTAA
AATGGCAAGCAACCTAGTGTTATCGGAGTGGGCAGGTCGAGGGAAGTAAA
ATAAATCAGGGGGCTCGCCCACGAAGACCCTGCTGGCTTCTTCATAAGAG
CCGTTT
back to top

Coding sequence (CDS) from alignment at CM002456.1:945716..947221+

>rna1006 ID=rna1006|Name=rna1006|organism=Nannochloropsis gaditana|type=CDS|length=915bp|location=Sequence derived from alignment at CM002456.1:945716..947221+ (Nannochloropsis gaditana)
ATGTGTGTCAGCGCGCGTTCGGAGACAGCCACTCCGCCAGCTGCTGTGTC
CGATACTAGTGCAAGTGGTAGCATCAAACGTTACTATGACAATGCTGGGC
TCGGTCGTCAGGATGGGGACGCAATAGACCAACTGAATGCATTTATGACT
AAGCAAGCGCACAAGGTCTGGAGTCCGGACAACGAGGACTACAAAGTGTA
CGAAATGGTGCGCCAGGGACACGTGGTCTTCAAGAGGCGGTGCATGCCGT
TGCTTTATTTCTACTGGGCCACCATTCTGGTCGGGCTGCTTCGAGCCCCG
TCTCTACTGTTCTTGGCGGGGGCCTTGGCTTCCACGTACTTCTATATGGA
ACTGTACAGCGCTGTTTTGCACATTGTGTTGGACAATCCGGCCTTTATAA
AAGTACCCGGCTTAGACCAGCCTGTTTTTGAGTTCTTAGCGCATCATATA
TTGCCCGTGGAAATCGCGCAGAGACGGTATCGAGACATTTGCGGTGACTT
GAACGTGATCGTGGGCCTCATCTTCGCGATCAATCTGCTTCTCTTTGATT
GGATGAAAGACGGGCGTGTCATGTGCGTTGTCGCCGCGGGTGGCGCCATG
GCATACTTGGGCCAGTTCGCTCACCGGCAGGCGCACATGCCCCCCTCGAA
AGTGAGCCCCTTTGCCCGCGCCTTGCAGGACGCGGGCCTCCTGGTCTCCC
CGCACTTGCACCGCGCGCACCACCGCACGTACGACCGGGGGTTTGCCATC
CTGGGGGGTTGGTCCGAGGGCTTGATCACAACGCTCTACCACCACGTGGT
CCCGTCCCAGTACGTGTGGCTGGCCTTGTTCGCTGTCATGACAGTGTTCG
GGCTGGCGGGCGTGGTGAAGATATACATCCCTGCCTACGACGCTTTCGTA
GCTTTCGTGCAGTAA
back to top
Synonyms
Publications