EWM29670.1, cds1005 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29670.1 vs. NCBI_GenBank
Match: gi|585112244|gb|EWM29670.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana]) HSP 1 Score: 626.706 bits (1615), Expect = 0.000e+0 Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0 Query: 1 MCVSARSETATPPAAVSDTSASGSIKRYYDNAGLGRQDGDAIDQLNAFMTKQAHKVWSPDNEDYKVYEMVRQGHVVFKRRCMPLLYFYWATILVGLLRAPSLLFLAGALASTYFYMELYSAVLHIVLDNPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLFDWMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAILGGWSEGLITTLYHHVVPSQYVWLALFAVMTVFGLAGVVKIYIPAYDAFVAFVQ 304 MCVSARSETATPPAAVSDTSASGSIKRYYDNAGLGRQDGDAIDQLNAFMTKQAHKVWSPDNEDYKVYEMVRQGHVVFKRRCMPLLYFYWATILVGLLRAPSLLFLAGALASTYFYMELYSAVLHIVLDNPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLFDWMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAILGGWSEGLITTLYHHVVPSQYVWLALFAVMTVFGLAGVVKIYIPAYDAFVAFVQ Sbjct: 1 MCVSARSETATPPAAVSDTSASGSIKRYYDNAGLGRQDGDAIDQLNAFMTKQAHKVWSPDNEDYKVYEMVRQGHVVFKRRCMPLLYFYWATILVGLLRAPSLLFLAGALASTYFYMELYSAVLHIVLDNPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLFDWMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAILGGWSEGLITTLYHHVVPSQYVWLALFAVMTVFGLAGVVKIYIPAYDAFVAFVQ 304
BLAST of EWM29670.1 vs. NCBI_GenBank
Match: gi|585105365|gb|EWM24073.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana] >gi|585105366|gb|EWM24074.1| Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana]) HSP 1 Score: 264.618 bits (675), Expect = 5.660e-84 Identity = 135/297 (45.45%), Postives = 182/297 (61.28%), Query Frame = 0 Query: 1 MCVSARSETATPPAAVSDTSAS--GSIKRYYDNAGLGRQDGDAIDQLNAFMTKQAHK-VWSPDNEDYKVYEMVRQGHVVFKRRCMPLLYFYWATILVGLLRAPSLLFLAGALASTYFYMELYSAVLHIVLDNPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLFDWMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAILGGWSEGLITTLYHHVVPSQYVWLALFAVMTVFGLAGVVKIYIP 294 MC+ + S P A S + + S+ +A G D +D+LN A K + P +E Y +MV++G VFK R PL+Y YWA + G+L PSL F GA TY Y++LY AVLHIVLDNP F+K+P + + EF HHI+P EI R +R I DLN I+GL + +NL+LF+ + D CV AYLGQ AHRQAHM P K P LQ GL+V+P HR HH+TYD+GF IL GWS+ +T LY +VVPSQ+VWLA+F ++T G+AG++++Y+P Sbjct: 1 MCIGSVSAAIPPVTAASAEAVAQHSSMPVPESDAQDGDASMDIVDRLNVQAKHLAAKTIGVPGDEHYACLQMVKEGATVFKHRIWPLMYIYWAYTVYGILTGPSLAFALGAFVLTYLYIDLYGAVLHIVLDNPNFLKLPLIGEACLEFQFHHIIPHEITVRDFRHIAADLNGIIGLEYGVNLILFNGLTDPAYRCVACCAVLNAYLGQLAHRQAHMRPEKRDPVVAVLQGLGLMVTPDTHRRHHKTYDQGFPILSGWSDAPVTFLYRYVVPSQWVWLAMFVLLTFGGIAGLIRLYLP 297
BLAST of EWM29670.1 vs. NCBI_GenBank
Match: gi|553187743|ref|XP_005854670.1| (kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|422294387|gb|EKU21687.1| kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 211.846 bits (538), Expect = 7.708e-63 Identity = 122/312 (39.10%), Postives = 176/312 (56.41%), Query Frame = 0 Query: 5 ARSETATPPAAVSDTSASGSIKRYYDNAGLGRQDGDA-------------IDQLNAFMTKQAH---KVWSPDNEDYKVYEMVRQGHVVFKRRCMPLLYFYWATILVGLLRAPSLLFLAGALASTYFYMELYSAVLHIVLDNPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLF---DWMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAILGGWSEGLITTLYHHVVPSQYVWLALFAVMTVFGLAGVVKIYIPAYD 297 + ++ AT + + TS S + +G D ++ I++LN K+A KV +P + D+ +YE+VR+G+ VFK R M LLY YWA GLLR PSL F A TY Y+ELY A+LH+ LDNP+F+ +P L + EF HH++P EI R Y I DLN+IV L F + ++F + + + +A G AYL ++AHRQAH P K FA+ LQD G LVS LHR HH+T+D GF +L G SE +I + V +Q+VWLA F +MT+ GL ++ + + ++ Sbjct: 2 STTKVATTTRSANCTSRPDSRLHDCSSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGAGLLRCPSLAFGMSAFIITYLYIELYGAILHVNLDNPSFLFLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVALQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFILMTLAGLPCIISVNMRLWE 313
BLAST of EWM29670.1 vs. NCBI_GenBank
Match: gi|585101427|gb|EWM21272.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Nannochloropsis gaditana]) HSP 1 Score: 211.846 bits (538), Expect = 7.876e-63 Identity = 120/312 (38.46%), Postives = 174/312 (55.77%), Query Frame = 0 Query: 5 ARSETATPPAAVSDTSASGSIKRYYDNAGLGRQDGDA-------------IDQLNAFMTKQAH---KVWSPDNEDYKVYEMVRQGHVVFKRRCMPLLYFYWATILVGLLRAPSLLFLAGALASTYFYMELYSAVLHIVLDNPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLF---DWMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAILGGWSEGLITTLYHHVVPSQYVWLALFAVMTVFGLAGVVKIYIPAYD 297 + ++ AT + + TS S + + +G D ++ I++LN K+A KV +P + D+ +YE+VR+G+ VFK R M LLY YWA GLLR PS F A TY Y+ELY A+LH+ LDNP+F+ +P L + EF HH++P EI R Y I DLN+IV + F + ++F + + + +A G AYL ++AHRQAH P K FA+ LQD G LVS LHR HH+T+D GF +L G SE +I + V +Q+VWLA F MT GL ++ + + ++ Sbjct: 2 STTKVATTTQSANCTSRPDSRLHDFSSTAVGGHDSESKARTWRILTPAQRIEKLNGMAMKRAQEMEKVLTPSHPDWPMYELVRRGNPVFKHRWMVLLYAYWALTGTGLLRCPSFAFGMSAFIITYLYIELYGAILHVNLDNPSFLSLPVLWEACLEFQYHHVIPSEITLRSYPQIAADLNLIVAMQFIVCTIVFYAHGGLFNPYIHATMACGLVNAYLLEWAHRQAHFPRGKRHAFAQYLQDRGFLVSEALHRRHHQTFDVGFPVLSGLSEPVINFVRAKVCANQWVWLAAFISMTFAGLPCIISVNMRLWE 313
BLAST of EWM29670.1 vs. NCBI_GenBank
Match: gi|676396509|ref|XP_009041532.1| (hypothetical protein AURANDRAFT_67743 [Aureococcus anophagefferens] >gi|323447839|gb|EGB03747.1| hypothetical protein AURANDRAFT_67743 [Aureococcus anophagefferens]) HSP 1 Score: 102.064 bits (253), Expect = 2.294e-21 Identity = 79/284 (27.82%), Postives = 129/284 (45.42%), Query Frame = 0 Query: 3 VSARSETATPPAAVSDTSASGSIKRYYD---NAGLGRQDGDAIDQLNAFMTKQ--AHKVWSPDNEDYKVYEMVRQGHVVFKRRCMPLLYFYWATILVGLLRAPSLLFLAGALASTYFYMELYSAVLHIVLD---NPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLFDWMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHR-TYDRGFAILGGWSEGLITTLYHHVVPSQYVWLALF 277 V+A+ A PPAA A+ + Y D N D D++ + +Q K P + V G +V+ R + +++ Y A + + +APS + + + Y ++YS V H+ LD N A +K L Q EF HH +PV+I ++ + C DLN+IV + IN + + G + AY GQ+ HR AH P SK A+ L D G + + H HH+ +D F ++ G+ +G+I + H + +VW + Sbjct: 24 VAAKLGRAAPPAARDPLLAAVPREVYMDAASNVPSASYYKDLNDKVADILERQRTGAKTAPPIELSHVV---AADGALVYPNRYLWMVWVYSAVAIYLICQAPSPAVVLLGVPAMYLCYDVYSGVTHVNLDDQRNLAGLKSYILFQGCLEFQWHHAIPVDITKKSFVACCADLNIIVAVSVVINCVALRYTT-GTAAALTGLKLFGAYFGQYCHRSAHTPKSKRPRVAQYLMDKGFMCPQNKHLGHHKPPHDANFCLV-GYCDGIINGMLKHCGTNDWVWFGFW 302
BLAST of EWM29670.1 vs. NCBI_GenBank
Match: gi|298706641|emb|CBJ29579.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 100.908 bits (250), Expect = 2.388e-21 Identity = 78/225 (34.67%), Postives = 113/225 (50.22%), Query Frame = 0 Query: 68 EMVRQGHVVFKRRCMPLLYFYWATILVGLLR--------APSLLFLAGALASTYFYMELYSAVLHIVLDNPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLFDWMKDGRVMCVVAAGGAM--AYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHR-TYDRGFAILGGWSEGLITTLYHHVVPSQYVWLALFAVMT 281 + V G + F +R L+ Y + L+R AP++ GA A YF ++ YS VLH+VLD+ + VP L QP EF HH +P + R + + GDLN IVGL A+ LF M + A G M AY G + HRQAH SK + LQ+ G+++SP H+ HH +D + +LG + +T L + S + W+ALF +T Sbjct: 38 QFVLGGRLPFVKRIETLVRGYVCVSMFFLIRYGILECGVAPTV----GAFAVMYFVLDFYSGVLHVVLDDDWNMNVPLLSQPAMEFQYHHHIPDDGCSRPFVEGMGDLNFIVGLHLALFTALFVRGGSQDFMLLTAGGWKMVLAYWGIWNHRQAHQLKSKRPRWCTYLQNNGIMLSPAAHKVHHTPPHDDEYCLLGV-TTWPVTWLGRRNLGSIF-WIALFLGLT 256
BLAST of EWM29670.1 vs. NCBI_GenBank
Match: gi|954193073|gb|KRX05823.1| (hypothetical protein PPERSA_02355 [Pseudocohnilembus persalinus]) HSP 1 Score: 101.679 bits (252), Expect = 3.221e-21 Identity = 62/211 (29.38%), Postives = 102/211 (48.34%), Query Frame = 0 Query: 76 VFKRRCMPLLYFYWATILVGLLRAPSLLFLAGALASTYFYMELYSAVLHIVLDNPAFI---KVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLFDWMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAILGGWSEGLITTLYHHVVPSQYVWLALFAVMTVF 283 V++ R L+ Y + + ++PS + +F+ +L+S +LH+ LD+P + + L +P EF HH++P +IA + Y GDLN +VGLIFA + + + M + AY GQF+H+ +H S F LQ + +L+S H+ HH +D F I G G+I +L + + VW +F F Sbjct: 101 VYEDRSKYLIAAYICLGIYLVSQSPSWQITVFSFFLNFFWYDLFSGILHVCLDDPRNLIGWRSAILYKPCLEFQWHHVIPADIASKPYYQSIGDLNFVVGLIFAFQCCM-GILSNPTAMVLSGFKFFFAYYGQFSHKMSHTFEGDRSIFVNLLQKSHILLSEKDHKVHHTNHDDNFCIGSGTFNGVIRSLL-KITTNPNVWFCIFGYSLFF 309
BLAST of EWM29670.1 vs. NCBI_GenBank
Match: gi|676397009|ref|XP_009041782.1| (hypothetical protein AURANDRAFT_67953 [Aureococcus anophagefferens] >gi|323447600|gb|EGB03515.1| hypothetical protein AURANDRAFT_67953 [Aureococcus anophagefferens]) HSP 1 Score: 98.5969 bits (244), Expect = 3.921e-20 Identity = 82/305 (26.89%), Postives = 136/305 (44.59%), Query Frame = 0 Query: 3 VSARSETATPPAAVSDTSASGSIKRYYD---NAGLGRQDGDAIDQLNAFMTKQ--AHKVWSPDNEDYKVYEMVRQGHVVFKRRCMPLLYFYWATILVGLLRAPSLLFLAGALASTYFYMELYSAVLHIVLD---NPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLFDWMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHR-TYDRGFAILGGWSEGLITTLYHHVVPSQYVWLAL---FAVMTVFGLAGVVKIYIPA 295 V+A+ A PPAA A+ + Y D N D D++ + +Q K P + V G +V+ R + +++ Y A + + +APS + + + Y ++YS V H+ LD N A +K L Q EF HH +PV+I ++ + C DLN+IV + IN + + AY GQ+ HR AH P SK A+ L D G + + H HH+ +D F ++ G+ +G+I + H + +VW F+ V+ + V+ + P+ Sbjct: 24 VAAKLGRAAPPAARDPLLAAVPREVYMDAASNVPSASYYKDLNDKVADILERQRTGAKTAPPIELSHVV---AADGALVYPNRYLWMVWVYSAVAIYLICQAPSPAVVLLGVPAMYLCYDVYSGVTHVNLDDQRNLAGLKSYILFQGCLEFQWHHAIPVDITKKSFVACCADLNIIVAVSVVINCVALRYTTGTAATLTGLKLFG-AYFGQYCHRSAHTPKSKRPRVAQYLMDKGFMCPQNKHLGHHKPPHDANFCLV-GYCDGIINGMLKHCGTNDWVWFGFWLAFSFGDVYVVNKVLTVAAPS 323
BLAST of EWM29670.1 vs. NCBI_GenBank
Match: gi|1181277989|ref|WP_084583998.1| (carotenoid synthesis regulator CarF [Sphingomonas azotifigens]) HSP 1 Score: 68.1662 bits (165), Expect = 7.991e-10 Identity = 63/222 (28.38%), Postives = 96/222 (43.24%), Query Frame = 0 Query: 78 KRRCMPLLYFYWATILVGLLRAPSLLFLAGALASTYFYMELYSAVLHIVLD---NPA--------------------------FIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAI--NLLLFD-----WMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAILGGWSEGLITTLY 263 +R MPL A LV +LR PS + AL + ++ +L S ++H+ +D PA KV LD+ +++F HH P + +R + G ++ L F++ N+L F W G V +V GGA A + +AH P RA++ GLL++P H+ HH T R FA GWS L+ L+ Sbjct: 3 RRILMPLFLLSLAANLVAVLRDPSWWVIP-ALLAGWYGADLASGLVHMYMDYKPTPAGKGLDALYFYAGSRESEHYKALWRERMAKVSPLDRLIYDFKNHHPRPDALGRRDLWRLIGSTVILAALPFSVMLNVLAFTGLVPGWAAAGGVTLIV--GGAFAQYFHGSLHRAHNPW-----IVRAMRRCGLLMTPAAHQLHHDTLQRDFATNCGWSNPLVNRLF 216
BLAST of EWM29670.1 vs. NCBI_GenBank
Match: gi|976912646|gb|KVH99123.1| (Kua-ubiquitin conjugating enzyme hybrid, localization [Cynara cardunculus var. scolymus]) HSP 1 Score: 67.0106 bits (162), Expect = 2.547e-9 Identity = 51/183 (27.87%), Postives = 82/183 (44.81%), Query Frame = 0 Query: 74 HVVFKRRCMPLLYFYWATILVGLLRAPSLL--FLAGALASTYFYMELYSAVLHIVLDNPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYR-DICGDLNVIVGLIFAINLLLFDWMKDGRVMCVVAAGGAMAYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAILGG 253 HV C +L+ ++ G + + L LAG + Y +++L+S V H V DN +P L + F HH LP +R++ ++ +I ++ +NL+ W VM V H AH SK+ ALQDAG++++ H AHHR+ D + I+ G Sbjct: 27 HVWVATGCTTVLFSLANAVVYGSTHSHTWLKTILAGFIG--YLFVDLFSGVYHWVFDNYGDFSIPILGSHIDTFRRHHELPWATTKRQFSSNLHVAARIITHVVPPMNLI---WHDQPAVMGFVGMFSGGVLFAVQIHAWAHESKSKLPAMVVALQDAGVVIAQSRHAAHHRSGDSSYCIVSG 204 The following BLAST results are available for this feature:
BLAST of EWM29670.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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