rna10058, rna10058 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10058
Unique Name	rna10058
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1189
Alignment location	KK037261.1:22580..24510 +

Link to JBrowse

Properties


Property Name	Value
Product	Bestrophin/UPF0187
Orig transcript id	gnl\|cribi\|Naga_100289g5.2202.mrna
Orig protein id	gnl\|cribi\|Naga_100289g5.2202
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037261.1	supercontig	KK037261.1:22580..24510 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100289g5	gene9759	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10058	rna10058-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20646.1	cds10027	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037261.1:22580..24510+
coding sequence from alignment at KK037261.1:22580..24510+

mRNA sequence

>rna10058 ID=rna10058|Name=rna10058|organism=Nannochloropsis gaditana|type=mRNA|length=1189bp
ACATGAACGAGGCCCGTGCCTGATTCCGATTTATAACATATTACAGGAAT
CCACATGGACACATAATCTACGAGACAAGCCAGACTTTCATCTCAAAAAG
TAGTTTGTGGCAAGGGCAGCCATGGCTCAGCATCAACCATGGAAATTCTT
GGTTTTTAAGTTTATAATTCTTGGTGGATGCATTTTTCTTGGAGCACAGG
GCAGCTCACTCTTCGATAAGATTCATGAACAACACCCCCAAAAGGGAGAC
AAAAGTTCCAAAACTTCCAAAAAGTCTTCATCTGGACAGCGTCGTGCAAG
TAGTCAGGCTTCAACTGAGGAAGCTGCCACAAAATCAAGTACCGTTCTGG
ATCCCGATTTCGACATGATTAGAAGGATCAAGGCTGGCACTTTCGATTTC
TTCAGGGATTCCTTGCCCGGCATGCTCGAGTACGTTGGAGGAGACGGGAG
TGAAAAGGATTGGGAGGAGTATGTAGGGCTGAGTACAGAAATAAAAGCCC
GCTCACCTCATTTCCTCACGCAAATGATGCAAACCATTTGTACTGCTGCC
TCACATACATTTTTATTTCCCTAAATCCTCTCGATGGATTCTTCCCTTGC
TGTCTCGTCTACTTTTCCCCGCTTCTCCTTTCTCAGAACGGTCACAAAGA
GGGAGGCACGACAAATCTTTGAGCAATTTCCCTTCATGAAAACCACCAAC
GTCTGGAAAAGATTTATAGAAACGGGAGAGGCTGCGGATGAGGACGCCGC
CGCCGCTGCAATGGTCGAGGCAGTGCGAGAGATGGGGGCTACCCTCATCG
AGGCGAGATCTATCACCAAAGACGCCGACACTGTCGTCCAGCACGCGAAT
GACTTCCTCGATGATCTGAAAGCAAACGACGCCTCCTCCCCTGAACTCGT
CGCGTCCGCCAAAAGGGGAAGTCCCAGGGCTATCGCCACTCTTCAACAGA
AATTTGTGGACCAGTACCTGGGCGGGATCGATCTGGAGACTTTTCAGAAC
CCTCAGTGGGTGGACAGGGCACGAGACAACTTTTTCGCGGACGAAAATTT
GCTTCGTGCGGTTGGGGACGAGAGCGTTCTGAGCAATCTTAGGAACCCGA
ACCTACGACCTCTTAAGGTGAGCGAGTACGAGGAAGCCGACCCAGCGCGC
ATTCTGTCCTCCCTCACCGGTAATCAGGCGCCCAGCTAG

protein sequence of rna10058

>rna10058-protein ID=rna10058-protein|Name=rna10058|organism=Nannochloropsis gaditana|type=polypeptide|length=344bp
MDIDLQNTYPENSKDGTHDVRSKEAVEGIESARGSGNVSLSPNPVLHPLI
PIQTGPLVQQRGAEDHDQGHLQIQRDQTALALIRSGSGSPTCAQKRSILM
QSEHGLQESHEKRIQSQEQQPEGGEELKARNRSISDKSLQSWESGTGGRH
LSRTATVSQLVNPKVPRRECHVLSELHAYRIPQPYPRKDQQRSCITTRPW
SFIRILFYFKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRIST
IHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDP
RDETLETREILVELAEDFRRKCNILYAFIRSEGRPGVMDKGKGG

mRNA from alignment at KK037261.1:22580..24510+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10058 ID=rna10058|Name=rna10058|organism=Nannochloropsis gaditana|type=mRNA|length=1931bp|location=Sequence derived from alignment at KK037261.1:22580..24510+ (Nannochloropsis gaditana)
GCCACGACAAAACTATTGTGTCAAGATCACTACCACAGGATGATTACGCG
AGATGCTTCTGCGAAGTCACATGGCATTTAAAGCTCTTTTACTTGTAGAC
AGATCATTTTCTGTTTAAGCATGTCAGCAAAGGGGtagatttttttttcc
actttTTCAAATCATATCCTTCACATCCAtgttcctccatcctttATGCC
CACGTAAGTATACAGATGGACATCGACCTTCAGAATACATACCCCGAAAA
TTCAAAGGATGGGACACACGATGTTAGAAGTAAAGAAGCTGTCGAGGGCA
TCGAGTCAGCACGTGGGTCTGGCAAcgtttctctctcccctaaCCCTGTA
CTTCACCCGCTAATTCCTATTCAAACCGGGCCCCTCGTCCAACAACGAGG
TGCCGAAGACCATGACCAAGGGCACTTGCAAATTCAAAGAGATCAAACAG
CCCTAGCTTTGATTCGAAGCGGGTCTGGAAGCCCCACCTGCGCCCAAAAA
AGAAGCATCTTAATGCAATCGGAGCACGGACTACAAGAGTCACACGAAAA
GCGAATTCAGTcacaggagcagcagccagagggtggagaggagtTGAAAG
CACGGAACAGAAGTATTTCGGACAAATCTCTCCAGTCTTGGGAGAGTGGG
ACAGGTGGCCGGCACCTCTCCCGCACAGCCACCGTGAGCCAGTTGGTCAA
CCCCAAGGTGCCTCGACGGGAGTGTCATGTGTTGAGCGAGCTTCACGCGT
ATCGGATTCCTCAGCCCTACCCAAGAAAGGATCAGCAGCGCTCGTGCATG
TAAGTTATGCGTGTGCGTCGGCTGCTCTGCATTTTTCTCGCCTTTGAACC
GAGGGTGCCAGCACTGGACAGACCTTCGTAAGCGTCTTTGTCTCCtgttc
tcccctttcctgtcGGAGACTCCTCTGCCTCATTTCTTACGATTTAAGAT
ATCTTGCGGGACTCATTTGCCCTTATCTGAGCGTCCACTCTCCGGCACTG
TTGCTAACCCATCAATGCCGCTTTGTTTTGCCCACTCCCTACCCCGCAGC
ACGACGAGGCCCTGGTCTTTCATTCGAATCCTTTTCTACTTCAAGGGCAC
CGTCCTTGAGAACATATGGCCTCAGGTGCCCCTCCtactccctttctccc
tgctTCTCTCCGATTTATCCACTATTGATGTCCGTCACCATGACCCTCTT
GCAGCTTTTGTTTCATCGCCgctcctcaccttccactTGCTTTCTTCCAG
ATTCTTTTGGGCGTCCTCGTGATCATCTTTATCAAAGTTCTCCAGTCTGT
CTTTGACGTCACGTACCAAGTCAACCCTCGGATCTCCACCATTCACACCA
TCCTGGGATCGGTCCTGGGCTTTATCACAGTGTTTCGAACGAAtcggtga
gagggaggaggaggaaaaggcaaagatggagggagggctgcatCTTGATG
CAGGGTAGGGACATGATGTGTCTTATGACAAAATCTGAAGTTACCCTTTT
TCGTGCACAActcacccctctcctcttttgctttgtccctcgctccctcc
ttccagcgcctATGATTCCTACATCGAGGGCCGTAAATTCATCGCCCGTG
TGGTCAACAACTTGCGAACAGCCATGATGGACATGTACATCAATGATCCT
CGGTACTAAAtcagccttttcctccatctctacTGTTTTCCGTTTCCTTG
CGTCTTTTTAAATTTCTTCCAATCATATACCTAGTCTTCTTTATGTTTTC
CCCCTTGTTACCTTTTTTCATTTCTTACCTTTAACATCGATGGTCCTCAG
AGACGAGACGCTCGAGACAAGAGAGATCCTGGTAGAGCTGGCTGAAGATT
TTAGGCGCAAGTGTAACATTCTTTACGCGTTCATCAGGTCAGAGGGAAGA
CCAGGAGTGATggacaaagggaaaggaggtt

Coding sequence (CDS) from alignment at KK037261.1:22580..24510+

>rna10058 ID=rna10058|Name=rna10058|organism=Nannochloropsis gaditana|type=CDS|length=5165bp|location=Sequence derived from alignment at KK037261.1:22580..24510+ (Nannochloropsis gaditana)
ATGGACATCGACCTTCAGAATACATACCCCGAAAATTCAAAGGATGGGAC
ACACGATGTTAGAAGTAAAGAAGCTGTCGAGGGCATCGAGTCAGCACGTG
GGTCTGGCAAcgtttctctctcccctaaCCCTGTACTTCACCCGCTAATT
CCTATTCAAACCGGGCCCCTCGTCCAACAACGAGGTGCCGAAGACCATGA
CCAAGGGCACTTGCAAATTCAAAGAGATCAAACAGCCCTAGCTTTGATTC
GAAGCGGGTCTGGAAGCCCCACCTGCGCCCAAAAAAGAAGCATCTTAATG
CAATCGGAGCACGGACTACAAGAGTCACACGAAAAGCGAATTCAGTcaca
ggagcagcagccagagggtggagaggagtTGAAAGCACGGAACAGAAGTA
TTTCGGACAAATCTCTCCAGTCTTGGGAGAGTGGGACAGGTGGCCGGCAC
CTCTCCCGCACAGCCACCGTGAGCCAGTTGGTCAACCCCAAGGTGCCTCG
ACGGGAGTGTCATGTGTTGAGCGAGCTTCACGCGTATCGGATTCCTCAGC
CCTACCCAAGAAAGGATCAGCAGCGCTCGTGCATCACGACGAGGCCCTGG
TCTTTCATTCGAATCCTTTTCTACTTCAAGGGCACCGTCCTTGAGAACAT
ATGGCCTCAGATTCTTTTGGGCGTCCTCGTGATCATCTTTATCAAAGTTC
TCCAGTCTGTCTTTGACGTCACGTACCAAGTCAACCCTCGGATCTCCACC
ATTCACACCATCCTGGGATCGGTCCTGGGCTTTATCACAGTGTTTCGAAC
GAAtcgcgcctATGATTCCTACATCGAGGGCCGTAAATTCATCGCCCGTG
TGGTCAACAACTTGCGAACAGCCATGATGGACATGTACATCAATGATCCT
CGAGACGAGACGCTCGAGACAAGAGAGATCCTGGTAGAGCTGGCTGAAGA
TTTTAGGCGCAAGTGTAACATTCTTTACGCGTTCATCAGGTCAGAGGGAA
GACCAGGAGTGATggacaaagggaaaggaggttATGGACATCGACCTTCA
GAATACATACCCCGAAAATTCAAAGGATGGGACACACGATGTTAGAAGTA
AAGAAGCTGTCGAGGGCATCGAGTCAGCACGTGGGTCTGGCAAcgtttct
ctctcccctaaCCCTGTACTTCACCCGCTAATTCCTATTCAAACCGGGCC
CCTCGTCCAACAACGAGGTGCCGAAGACCATGACCAAGGGCACTTGCAAA
TTCAAAGAGATCAAACAGCCCTAGCTTTGATTCGAAGCGGGTCTGGAAGC
CCCACCTGCGCCCAAAAAAGAAGCATCTTAATGCAATCGGAGCACGGACT
ACAAGAGTCACACGAAAAGCGAATTCAGTcacaggagcagcagccagagg
gtggagaggagtTGAAAGCACGGAACAGAAGTATTTCGGACAAATCTCTC
CAGTCTTGGGAGAGTGGGACAGGTGGCCGGCACCTCTCCCGCACAGCCAC
CGTGAGCCAGTTGGTCAACCCCAAGGTGCCTCGACGGGAGTGTCATGTGT
TGAGCGAGCTTCACGCGTATCGGATTCCTCAGCCCTACCCAAGAAAGGAT
CAGCAGCGCTCGTGCATCACGACGAGGCCCTGGTCTTTCATTCGAATCCT
TTTCTACTTCAAGGGCACCGTCCTTGAGAACATATGGCCTCAGATTCTTT
TGGGCGTCCTCGTGATCATCTTTATCAAAGTTCTCCAGTCTGTCTTTGAC
GTCACGTACCAAGTCAACCCTCGGATCTCCACCATTCACACCATCCTGGG
ATCGGTCCTGGGCTTTATCACAGTGTTTCGAACGAAtcgcgcctATGATT
CCTACATCGAGGGCCGTAAATTCATCGCCCGTGTGGTCAACAACTTGCGA
ACAGCCATGATGGACATGTACATCAATGATCCTCGAGACGAGACGCTCGA
GACAAGAGAGATCCTGGTAGAGCTGGCTGAAGATTTTAGGCGCAAGTGTA
ACATTCTTTACGCGTTCATCAGGTCAGAGGGAAGACCAGGAGTGATggac
aaagggaaaggaggttATGGACATCGACCTTCAGAATACATACCCCGAAA
ATTCAAAGGATGGGACACACGATGTTAGAAGTAAAGAAGCTGTCGAGGGC
ATCGAGTCAGCACGTGGGTCTGGCAAcgtttctctctcccctaaCCCTGT
ACTTCACCCGCTAATTCCTATTCAAACCGGGCCCCTCGTCCAACAACGAG
GTGCCGAAGACCATGACCAAGGGCACTTGCAAATTCAAAGAGATCAAACA
GCCCTAGCTTTGATTCGAAGCGGGTCTGGAAGCCCCACCTGCGCCCAAAA
AAGAAGCATCTTAATGCAATCGGAGCACGGACTACAAGAGTCACACGAAA
AGCGAATTCAGTcacaggagcagcagccagagggtggagaggagtTGAAA
GCACGGAACAGAAGTATTTCGGACAAATCTCTCCAGTCTTGGGAGAGTGG
GACAGGTGGCCGGCACCTCTCCCGCACAGCCACCGTGAGCCAGTTGGTCA
ACCCCAAGGTGCCTCGACGGGAGTGTCATGTGTTGAGCGAGCTTCACGCG
TATCGGATTCCTCAGCCCTACCCAAGAAAGGATCAGCAGCGCTCGTGCAT
CACGACGAGGCCCTGGTCTTTCATTCGAATCCTTTTCTACTTCAAGGGCA
CCGTCCTTGAGAACATATGGCCTCAGATTCTTTTGGGCGTCCTCGTGATC
ATCTTTATCAAAGTTCTCCAGTCTGTCTTTGACGTCACGTACCAAGTCAA
CCCTCGGATCTCCACCATTCACACCATCCTGGGATCGGTCCTGGGCTTTA
TCACAGTGTTTCGAACGAAtcgcgcctATGATTCCTACATCGAGGGCCGT
AAATTCATCGCCCGTGTGGTCAACAACTTGCGAACAGCCATGATGGACAT
GTACATCAATGATCCTCGAGACGAGACGCTCGAGACAAGAGAGATCCTGG
TAGAGCTGGCTGAAGATTTTAGGCGCAAGTGTAACATTCTTTACGCGTTC
ATCAGGTCAGAGGGAAGACCAGGAGTGATggacaaagggaaaggaggttA
TGGACATCGACCTTCAGAATACATACCCCGAAAATTCAAAGGATGGGACA
CACGATGTTAGAAGTAAAGAAGCTGTCGAGGGCATCGAGTCAGCACGTGG
GTCTGGCAAcgtttctctctcccctaaCCCTGTACTTCACCCGCTAATTC
CTATTCAAACCGGGCCCCTCGTCCAACAACGAGGTGCCGAAGACCATGAC
CAAGGGCACTTGCAAATTCAAAGAGATCAAACAGCCCTAGCTTTGATTCG
AAGCGGGTCTGGAAGCCCCACCTGCGCCCAAAAAAGAAGCATCTTAATGC
AATCGGAGCACGGACTACAAGAGTCACACGAAAAGCGAATTCAGTcacag
gagcagcagccagagggtggagaggagtTGAAAGCACGGAACAGAAGTAT
TTCGGACAAATCTCTCCAGTCTTGGGAGAGTGGGACAGGTGGCCGGCACC
TCTCCCGCACAGCCACCGTGAGCCAGTTGGTCAACCCCAAGGTGCCTCGA
CGGGAGTGTCATGTGTTGAGCGAGCTTCACGCGTATCGGATTCCTCAGCC
CTACCCAAGAAAGGATCAGCAGCGCTCGTGCATCACGACGAGGCCCTGGT
CTTTCATTCGAATCCTTTTCTACTTCAAGGGCACCGTCCTTGAGAACATA
TGGCCTCAGATTCTTTTGGGCGTCCTCGTGATCATCTTTATCAAAGTTCT
CCAGTCTGTCTTTGACGTCACGTACCAAGTCAACCCTCGGATCTCCACCA
TTCACACCATCCTGGGATCGGTCCTGGGCTTTATCACAGTGTTTCGAACG
AAtcgcgcctATGATTCCTACATCGAGGGCCGTAAATTCATCGCCCGTGT
GGTCAACAACTTGCGAACAGCCATGATGGACATGTACATCAATGATCCTC
GAGACGAGACGCTCGAGACAAGAGAGATCCTGGTAGAGCTGGCTGAAGAT
TTTAGGCGCAAGTGTAACATTCTTTACGCGTTCATCAGGTCAGAGGGAAG
ACCAGGAGTGATggacaaagggaaaggaggttATGGACATCGACCTTCAG
AATACATACCCCGAAAATTCAAAGGATGGGACACACGATGTTAGAAGTAA
AGAAGCTGTCGAGGGCATCGAGTCAGCACGTGGGTCTGGCAAcgtttctc
tctcccctaaCCCTGTACTTCACCCGCTAATTCCTATTCAAACCGGGCCC
CTCGTCCAACAACGAGGTGCCGAAGACCATGACCAAGGGCACTTGCAAAT
TCAAAGAGATCAAACAGCCCTAGCTTTGATTCGAAGCGGGTCTGGAAGCC
CCACCTGCGCCCAAAAAAGAAGCATCTTAATGCAATCGGAGCACGGACTA
CAAGAGTCACACGAAAAGCGAATTCAGTcacaggagcagcagccagaggg
tggagaggagtTGAAAGCACGGAACAGAAGTATTTCGGACAAATCTCTCC
AGTCTTGGGAGAGTGGGACAGGTGGCCGGCACCTCTCCCGCACAGCCACC
GTGAGCCAGTTGGTCAACCCCAAGGTGCCTCGACGGGAGTGTCATGTGTT
GAGCGAGCTTCACGCGTATCGGATTCCTCAGCCCTACCCAAGAAAGGATC
AGCAGCGCTCGTGCATCACGACGAGGCCCTGGTCTTTCATTCGAATCCTT
TTCTACTTCAAGGGCACCGTCCTTGAGAACATATGGCCTCAGATTCTTTT
GGGCGTCCTCGTGATCATCTTTATCAAAGTTCTCCAGTCTGTCTTTGACG
TCACGTACCAAGTCAACCCTCGGATCTCCACCATTCACACCATCCTGGGA
TCGGTCCTGGGCTTTATCACAGTGTTTCGAACGAAtcgcgcctATGATTC
CTACATCGAGGGCCGTAAATTCATCGCCCGTGTGGTCAACAACTTGCGAA
CAGCCATGATGGACATGTACATCAATGATCCTCGAGACGAGACGCTCGAG
ACAAGAGAGATCCTGGTAGAGCTGGCTGAAGATTTTAGGCGCAAGTGTAA
CATTCTTTACGCGTTCATCAGGTCAGAGGGAAGACCAGGAGTGATggaca
aagggaaaggaggtt

Synonyms

Publications