EWM20646.1, cds10027 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|585100445|gb|EWM20646.1| (Bestrophin/UPF0187, partial [Nannochloropsis gaditana]) HSP 1 Score: 711.835 bits (1836), Expect = 0.000e+0 Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0 Query: 1 MDIDLQNTYPENSKDGTHDVRSKEAVEGIESARGSGNVSLSPNPVLHPLIPIQTGPLVQQRGAEDHDQGHLQIQRDQTALALIRSGSGSPTCAQKRSILMQSEHGLQESHEKRIQSQEQQPEGGEELKARNRSISDKSLQSWESGTGGRHLSRTATVSQLVNPKVPRRECHVLSELHAYRIPQPYPRKDQQRSCITTRPWSFIRILFYFKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLETREILVELAEDFRRKCNILYAFIRSEGRPGVMDKGKGG 344 MDIDLQNTYPENSKDGTHDVRSKEAVEGIESARGSGNVSLSPNPVLHPLIPIQTGPLVQQRGAEDHDQGHLQIQRDQTALALIRSGSGSPTCAQKRSILMQSEHGLQESHEKRIQSQEQQPEGGEELKARNRSISDKSLQSWESGTGGRHLSRTATVSQLVNPKVPRRECHVLSELHAYRIPQPYPRKDQQRSCITTRPWSFIRILFYFKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLETREILVELAEDFRRKCNILYAFIRSEGRPGVMDKGKGG Sbjct: 1 MDIDLQNTYPENSKDGTHDVRSKEAVEGIESARGSGNVSLSPNPVLHPLIPIQTGPLVQQRGAEDHDQGHLQIQRDQTALALIRSGSGSPTCAQKRSILMQSEHGLQESHEKRIQSQEQQPEGGEELKARNRSISDKSLQSWESGTGGRHLSRTATVSQLVNPKVPRRECHVLSELHAYRIPQPYPRKDQQRSCITTRPWSFIRILFYFKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLETREILVELAEDFRRKCNILYAFIRSEGRPGVMDKGKGG 344
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|255076247|ref|XP_002501798.1| (membrane protein [Micromonas commoda] >gi|226517062|gb|ACO63056.1| membrane protein [Micromonas commoda]) HSP 1 Score: 81.6481 bits (200), Expect = 3.850e-13 Identity = 50/144 (34.72%), Postives = 79/144 (54.86%), Query Frame = 0 Query: 199 PWSFIRILFYFKGTVLENIWPQILLGVLVIIF---IKVLQSVFDVTYQVNPRIS---TIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTA--MMDMYINDPRDETLETREILVELAEDFRRKCNILYAFIRSEGR 334 P++FI ILF ++GTVL I PQ LL V IF IK+ ++T ++ T H++ G ++GF+ VFRT+ +Y + EG+K++ + + +R A + ++ DE +I + E RR N+LYAFIR R Sbjct: 1047 PFTFITILFRYRGTVLPKIMPQTLLAAAVSIFAQIIKIYWCGANITSHSECPLAFSETAHSVAGGIIGFMLVFRTSISYYRFYEGKKYLGHLYDCIRNANIAFNSFLRVGNDEQGHDAKINADKVE-LRRLSNVLYAFIRQAVR 1189
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|303278418|ref|XP_003058502.1| (membrane protein [Micromonas pusilla CCMP1545] >gi|226459662|gb|EEH56957.1| membrane protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 72.7886 bits (177), Expect = 2.844e-10 Identity = 43/146 (29.45%), Postives = 79/146 (54.11%), Query Frame = 0 Query: 199 PWSFIRILFYFKGTVLENIWPQILLGVLVIIFIKVLQSVF---DVTYQVNPRIS---TIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMM--DMYINDPRDETLET--REILVELAEDFRRKCNILYAFIRSEGR 334 P +F +LF ++GTVL I PQ L V V + +V++ + ++T ++ T H++ G ++GF+ VFRT+ +Y + EG+K++ + +++R A + + ++ DE + L + RR ++LYAFIR R Sbjct: 1029 PLTFFTVLFRYRGTVLPKIMPQTLFAVFVSVLAQVVKIYWCGANITSHSECPLAFSETAHSVAGGIIGFMLVFRTSISYYRFYEGKKYLGNLYDSVRNANIGFNAFMRSSEDEHVHAGFSHSLNRDRVELRRLSSVLYAFIRQAVR 1174
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|553194865|ref|XP_005856043.1| (membrane protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293015|gb|EKU20316.1| membrane protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 67.3958 bits (163), Expect = 4.983e-9 Identity = 47/156 (30.13%), Postives = 72/156 (46.15%), Query Frame = 0 Query: 203 IRILFYFKGTVLENIWPQILLGVLVIIFIKVL----------QSVFDVTYQVN--PRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMY---INDPRDET---------LETREILVELAEDFRRKCNILYAFIRSEGR 334 +R L +F +WP I G+ I ++L Q F V P + H +GS+LGF FRTN AYD Y EGRK ++ ++ N R+ + D+Y + P + + ++ ++ D RR+ NIL+AFIR R Sbjct: 62 LRTLLWFAYL----LWPYIGFGIFSSILAQLLLATVSQEHVEQGSFLTMLDVKDYPDLKIGHGFIGSILGFSIAFRTNAAYDRYYEGRKILSIILENSRSILRDVYSFLLKAPAFPSPTSSCSSLPVPDDAAVLVISSDLRRRLNILFAFIRQSVR 213
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|751839977|emb|CEL57591.1| (UPF0187 protein [Rhizoctonia solani AG-1 IB]) HSP 1 Score: 66.2402 bits (160), Expect = 2.020e-8 Identity = 40/139 (28.78%), Postives = 71/139 (51.08%), Query Frame = 0 Query: 209 FKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLET-----REILVELAEDFRRKCNILYAFIRS-----EGRPGV 337 F+GTVL ++WP+++ + + + D NP++ T+ LG+VLG + FRT AYD Y EGRK A + + R ++I+ P D + ++ ++ L+++ + N++ AF S G PG+ Sbjct: 17 FRGTVLNDLWPELMFFTGIGAMVTCVSKFTDTKLAFNPQLLTV---LGTVLGLVISFRTTSAYDRYWEGRKLWATISLSSRNLANLIWIHVPTDRSAKSSTPLPKDHLLKVMIEKTSMINLIQAFSVSVKHYLRGEPGI 152
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|1021835088|gb|KZP23433.1| (UPF0187-domain-containing protein [Fibularhizoctonia sp. CBS 109695]) HSP 1 Score: 66.2402 bits (160), Expect = 2.066e-8 Identity = 42/142 (29.58%), Postives = 81/142 (57.04%), Query Frame = 0 Query: 206 LFYFKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLE-TREI--LVELAEDFRRKCNILYA-------FIRSEGRPGV 337 ++ F+ TV +IWP++L LV + ++ + + V+ + + T+LG+VLG + FRT+ AY+ Y +GRK + ++ R M ++I+ P ++ T+E+ +VE+A + + N+++A F+RSE PG+ Sbjct: 13 MYKFRATVFNDIWPEVLFFSLVATMVVLVSELTPHSLGVS---NQMLTVLGTVLGLVISFRTSSAYERYQDGRKLWSNIMVASRNIAMMIWIHVPSSREIKGTQEMTPIVEVAIEKKSMINLVHAFSVATKHFLRSE--PGI 149
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|551330710|ref|WP_022950152.1| (membrane protein [Methylohalobius crimeensis]) HSP 1 Score: 65.0846 bits (157), Expect = 2.581e-8 Identity = 40/122 (32.79%), Postives = 64/122 (52.46%), Query Frame = 0 Query: 195 ITTRPWSFIRILFYFKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMY--INDPRD--ETLETREILV 312 I + +++IR+LF+F+G+ E WP+IL ++ I + L+ + + Q +T ++G LG FR N AYD + EGRK +VN R+ Y I+ P+D E RE+ V Sbjct: 2 IVKQKFAWIRLLFHFRGSSFEETWPRILTVTVIAIIVTYLEMRYGL--QKYTLTTTPFALIGVALGIFLGFRNNAAYDRFWEGRKLWGALVNTARSLARQAYSLIDGPQDDAELQRFREMFV 121
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|576981148|gb|EUC53891.1| (bestrophin protein [Rhizoctonia solani AG-3 Rhs1AP]) HSP 1 Score: 65.0846 bits (157), Expect = 5.311e-8 Identity = 40/139 (28.78%), Postives = 69/139 (49.64%), Query Frame = 0 Query: 209 FKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLET-----REILVELAEDFRRKCNILYAFIRS-----EGRPGV 337 F+GTVL ++WP+++ V + + D NP++ T+ LG+VLG + FRT AYD Y EGRK + + R ++I+ P D + ++ ++ L+ + + N++ AF S G PG+ Sbjct: 17 FRGTVLNDLWPELMFFTGVGAMVTCVSKFTDTKLSFNPQLLTV---LGTVLGLVISFRTTSAYDRYWEGRKLWTTISLSSRNLANLIWIHVPTDRSAKSSTPLPKDHLLRVTIEKSSMINLIQAFSVSVKHYLRGEPGI 152
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|660971256|gb|KEP54926.1| (bestrophin protein [Rhizoctonia solani 123E]) HSP 1 Score: 65.0846 bits (157), Expect = 5.498e-8 Identity = 40/139 (28.78%), Postives = 69/139 (49.64%), Query Frame = 0 Query: 209 FKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLET-----REILVELAEDFRRKCNILYAFIRS-----EGRPGV 337 F+GTVL ++WP+++ V + + D NP++ T+ LG+VLG + FRT AYD Y EGRK + + R ++I+ P D + ++ ++ L+ + + N++ AF S G PG+ Sbjct: 17 FRGTVLNDLWPELMFFTGVGAMVTCVSKFTDTKLSFNPQLLTV---LGTVLGLVISFRTTSAYDRYWEGRKLWTTISLSSRNLANLIWIHVPTDRSAKSSTPLPKDHLLRVTIEKSSMINLIQAFSVSVKHYLRGEPGI 152
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|924113974|emb|CUA77434.1| (hypothetical protein RSOLAG22IIIB_02448 [Rhizoctonia solani]) HSP 1 Score: 65.0846 bits (157), Expect = 6.071e-8 Identity = 39/139 (28.06%), Postives = 71/139 (51.08%), Query Frame = 0 Query: 209 FKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLET-----REILVELAEDFRRKCNILYAFIRS-----EGRPGV 337 F+GTVL ++WP++L + + + + D +P++ T+ LG+VLG + FRT AYD Y EGRK + + R ++I+ P D + ++ ++ L+++ + N++ AF S G PG+ Sbjct: 17 FRGTVLNDLWPELLFFTGIGVMVTCVSKFTDTKISFDPQLLTV---LGTVLGLVISFRTTSAYDRYWEGRKLWTTISLSSRNLANLIWIHVPTDRSAKSSTPLPKDHLLKVMIEKASMINLIQAFSVSVKHYLRGEPGI 152 The following BLAST results are available for this feature:
BLAST of EWM20646.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|