EWM20646.1, cds10027 (CDS) Nannochloropsis gaditana

Overview
NameEWM20646.1
Unique Namecds10027
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:22795..23378 +
Alignment locationKK037261.1:23629..23704 +
Alignment locationKK037261.1:23830..23975 +
Alignment locationKK037261.1:24136..24231 +
Alignment locationKK037261.1:24380..24510 +

Link to JBrowse

Properties
Property NameValue
End range.
End range24510
Protein idEWM20646.1
ProductBestrophin/UPF0187
Partialtrue
Orig transcript idgnl|cribi|Naga_100289g5.2202.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:22795..23378 +
KK037261.1supercontigKK037261.1:23629..23704 +
KK037261.1supercontigKK037261.1:23830..23975 +
KK037261.1supercontigKK037261.1:24136..24231 +
KK037261.1supercontigKK037261.1:24380..24510 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR021134Bestrophin/UPF0187
Homology
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|585100445|gb|EWM20646.1| (Bestrophin/UPF0187, partial [Nannochloropsis gaditana])

HSP 1 Score: 711.835 bits (1836), Expect = 0.000e+0
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0
Query:    1 MDIDLQNTYPENSKDGTHDVRSKEAVEGIESARGSGNVSLSPNPVLHPLIPIQTGPLVQQRGAEDHDQGHLQIQRDQTALALIRSGSGSPTCAQKRSILMQSEHGLQESHEKRIQSQEQQPEGGEELKARNRSISDKSLQSWESGTGGRHLSRTATVSQLVNPKVPRRECHVLSELHAYRIPQPYPRKDQQRSCITTRPWSFIRILFYFKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLETREILVELAEDFRRKCNILYAFIRSEGRPGVMDKGKGG 344
            MDIDLQNTYPENSKDGTHDVRSKEAVEGIESARGSGNVSLSPNPVLHPLIPIQTGPLVQQRGAEDHDQGHLQIQRDQTALALIRSGSGSPTCAQKRSILMQSEHGLQESHEKRIQSQEQQPEGGEELKARNRSISDKSLQSWESGTGGRHLSRTATVSQLVNPKVPRRECHVLSELHAYRIPQPYPRKDQQRSCITTRPWSFIRILFYFKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLETREILVELAEDFRRKCNILYAFIRSEGRPGVMDKGKGG
Sbjct:    1 MDIDLQNTYPENSKDGTHDVRSKEAVEGIESARGSGNVSLSPNPVLHPLIPIQTGPLVQQRGAEDHDQGHLQIQRDQTALALIRSGSGSPTCAQKRSILMQSEHGLQESHEKRIQSQEQQPEGGEELKARNRSISDKSLQSWESGTGGRHLSRTATVSQLVNPKVPRRECHVLSELHAYRIPQPYPRKDQQRSCITTRPWSFIRILFYFKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLETREILVELAEDFRRKCNILYAFIRSEGRPGVMDKGKGG 344          
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|255076247|ref|XP_002501798.1| (membrane protein [Micromonas commoda] >gi|226517062|gb|ACO63056.1| membrane protein [Micromonas commoda])

HSP 1 Score: 81.6481 bits (200), Expect = 3.850e-13
Identity = 50/144 (34.72%), Postives = 79/144 (54.86%), Query Frame = 0
Query:  199 PWSFIRILFYFKGTVLENIWPQILLGVLVIIF---IKVLQSVFDVTYQVNPRIS---TIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTA--MMDMYINDPRDETLETREILVELAEDFRRKCNILYAFIRSEGR 334
            P++FI ILF ++GTVL  I PQ LL   V IF   IK+     ++T      ++   T H++ G ++GF+ VFRT+ +Y  + EG+K++  + + +R A    + ++    DE     +I  +  E  RR  N+LYAFIR   R
Sbjct: 1047 PFTFITILFRYRGTVLPKIMPQTLLAAAVSIFAQIIKIYWCGANITSHSECPLAFSETAHSVAGGIIGFMLVFRTSISYYRFYEGKKYLGHLYDCIRNANIAFNSFLRVGNDEQGHDAKINADKVE-LRRLSNVLYAFIRQAVR 1189          
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|303278418|ref|XP_003058502.1| (membrane protein [Micromonas pusilla CCMP1545] >gi|226459662|gb|EEH56957.1| membrane protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 72.7886 bits (177), Expect = 2.844e-10
Identity = 43/146 (29.45%), Postives = 79/146 (54.11%), Query Frame = 0
Query:  199 PWSFIRILFYFKGTVLENIWPQILLGVLVIIFIKVLQSVF---DVTYQVNPRIS---TIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMM--DMYINDPRDETLET--REILVELAEDFRRKCNILYAFIRSEGR 334
            P +F  +LF ++GTVL  I PQ L  V V +  +V++  +   ++T      ++   T H++ G ++GF+ VFRT+ +Y  + EG+K++  + +++R A +  + ++    DE +       L     + RR  ++LYAFIR   R
Sbjct: 1029 PLTFFTVLFRYRGTVLPKIMPQTLFAVFVSVLAQVVKIYWCGANITSHSECPLAFSETAHSVAGGIIGFMLVFRTSISYYRFYEGKKYLGNLYDSVRNANIGFNAFMRSSEDEHVHAGFSHSLNRDRVELRRLSSVLYAFIRQAVR 1174          
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|553194865|ref|XP_005856043.1| (membrane protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293015|gb|EKU20316.1| membrane protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 67.3958 bits (163), Expect = 4.983e-9
Identity = 47/156 (30.13%), Postives = 72/156 (46.15%), Query Frame = 0
Query:  203 IRILFYFKGTVLENIWPQILLGVLVIIFIKVL----------QSVFDVTYQVN--PRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMY---INDPRDET---------LETREILVELAEDFRRKCNILYAFIRSEGR 334
            +R L +F       +WP I  G+   I  ++L          Q  F     V   P +   H  +GS+LGF   FRTN AYD Y EGRK ++ ++ N R+ + D+Y   +  P   +         +     ++ ++ D RR+ NIL+AFIR   R
Sbjct:   62 LRTLLWFAYL----LWPYIGFGIFSSILAQLLLATVSQEHVEQGSFLTMLDVKDYPDLKIGHGFIGSILGFSIAFRTNAAYDRYYEGRKILSIILENSRSILRDVYSFLLKAPAFPSPTSSCSSLPVPDDAAVLVISSDLRRRLNILFAFIRQSVR 213          
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|751839977|emb|CEL57591.1| (UPF0187 protein [Rhizoctonia solani AG-1 IB])

HSP 1 Score: 66.2402 bits (160), Expect = 2.020e-8
Identity = 40/139 (28.78%), Postives = 71/139 (51.08%), Query Frame = 0
Query:  209 FKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLET-----REILVELAEDFRRKCNILYAFIRS-----EGRPGV 337
            F+GTVL ++WP+++    +   +  +    D     NP++ T+   LG+VLG +  FRT  AYD Y EGRK  A +  + R     ++I+ P D + ++     ++ L+++  +     N++ AF  S      G PG+
Sbjct:   17 FRGTVLNDLWPELMFFTGIGAMVTCVSKFTDTKLAFNPQLLTV---LGTVLGLVISFRTTSAYDRYWEGRKLWATISLSSRNLANLIWIHVPTDRSAKSSTPLPKDHLLKVMIEKTSMINLIQAFSVSVKHYLRGEPGI 152          
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|1021835088|gb|KZP23433.1| (UPF0187-domain-containing protein [Fibularhizoctonia sp. CBS 109695])

HSP 1 Score: 66.2402 bits (160), Expect = 2.066e-8
Identity = 42/142 (29.58%), Postives = 81/142 (57.04%), Query Frame = 0
Query:  206 LFYFKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLE-TREI--LVELAEDFRRKCNILYA-------FIRSEGRPGV 337
            ++ F+ TV  +IWP++L   LV   + ++  +   +  V+   + + T+LG+VLG +  FRT+ AY+ Y +GRK  + ++   R   M ++I+ P    ++ T+E+  +VE+A + +   N+++A       F+RSE  PG+
Sbjct:   13 MYKFRATVFNDIWPEVLFFSLVATMVVLVSELTPHSLGVS---NQMLTVLGTVLGLVISFRTSSAYERYQDGRKLWSNIMVASRNIAMMIWIHVPSSREIKGTQEMTPIVEVAIEKKSMINLVHAFSVATKHFLRSE--PGI 149          
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|551330710|ref|WP_022950152.1| (membrane protein [Methylohalobius crimeensis])

HSP 1 Score: 65.0846 bits (157), Expect = 2.581e-8
Identity = 40/122 (32.79%), Postives = 64/122 (52.46%), Query Frame = 0
Query:  195 ITTRPWSFIRILFYFKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMY--INDPRD--ETLETREILV 312
            I  + +++IR+LF+F+G+  E  WP+IL   ++ I +  L+  + +  Q     +T   ++G  LG    FR N AYD + EGRK    +VN  R+     Y  I+ P+D  E    RE+ V
Sbjct:    2 IVKQKFAWIRLLFHFRGSSFEETWPRILTVTVIAIIVTYLEMRYGL--QKYTLTTTPFALIGVALGIFLGFRNNAAYDRFWEGRKLWGALVNTARSLARQAYSLIDGPQDDAELQRFREMFV 121          
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|576981148|gb|EUC53891.1| (bestrophin protein [Rhizoctonia solani AG-3 Rhs1AP])

HSP 1 Score: 65.0846 bits (157), Expect = 5.311e-8
Identity = 40/139 (28.78%), Postives = 69/139 (49.64%), Query Frame = 0
Query:  209 FKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLET-----REILVELAEDFRRKCNILYAFIRS-----EGRPGV 337
            F+GTVL ++WP+++    V   +  +    D     NP++ T+   LG+VLG +  FRT  AYD Y EGRK    +  + R     ++I+ P D + ++     ++ L+ +  +     N++ AF  S      G PG+
Sbjct:   17 FRGTVLNDLWPELMFFTGVGAMVTCVSKFTDTKLSFNPQLLTV---LGTVLGLVISFRTTSAYDRYWEGRKLWTTISLSSRNLANLIWIHVPTDRSAKSSTPLPKDHLLRVTIEKSSMINLIQAFSVSVKHYLRGEPGI 152          
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|660971256|gb|KEP54926.1| (bestrophin protein [Rhizoctonia solani 123E])

HSP 1 Score: 65.0846 bits (157), Expect = 5.498e-8
Identity = 40/139 (28.78%), Postives = 69/139 (49.64%), Query Frame = 0
Query:  209 FKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLET-----REILVELAEDFRRKCNILYAFIRS-----EGRPGV 337
            F+GTVL ++WP+++    V   +  +    D     NP++ T+   LG+VLG +  FRT  AYD Y EGRK    +  + R     ++I+ P D + ++     ++ L+ +  +     N++ AF  S      G PG+
Sbjct:   17 FRGTVLNDLWPELMFFTGVGAMVTCVSKFTDTKLSFNPQLLTV---LGTVLGLVISFRTTSAYDRYWEGRKLWTTISLSSRNLANLIWIHVPTDRSAKSSTPLPKDHLLRVTIEKSSMINLIQAFSVSVKHYLRGEPGI 152          
BLAST of EWM20646.1 vs. NCBI_GenBank
Match: gi|924113974|emb|CUA77434.1| (hypothetical protein RSOLAG22IIIB_02448 [Rhizoctonia solani])

HSP 1 Score: 65.0846 bits (157), Expect = 6.071e-8
Identity = 39/139 (28.06%), Postives = 71/139 (51.08%), Query Frame = 0
Query:  209 FKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLET-----REILVELAEDFRRKCNILYAFIRS-----EGRPGV 337
            F+GTVL ++WP++L    + + +  +    D     +P++ T+   LG+VLG +  FRT  AYD Y EGRK    +  + R     ++I+ P D + ++     ++ L+++  +     N++ AF  S      G PG+
Sbjct:   17 FRGTVLNDLWPELLFFTGIGVMVTCVSKFTDTKISFDPQLLTV---LGTVLGLVISFRTTSAYDRYWEGRKLWTTISLSSRNLANLIWIHVPTDRSAKSSTPLPKDHLLKVMIEKASMINLIQAFSVSVKHYLRGEPGI 152          
The following BLAST results are available for this feature:
BLAST of EWM20646.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100445|gb|EWM20646.1|0.000e+0100.00Bestrophin/UPF0187, partial [Nannochloropsis gadit... [more]
gi|255076247|ref|XP_002501798.1|3.850e-1334.72membrane protein [Micromonas commoda] >gi|22651706... [more]
gi|303278418|ref|XP_003058502.1|2.844e-1029.45membrane protein [Micromonas pusilla CCMP1545] >gi... [more]
gi|553194865|ref|XP_005856043.1|4.983e-930.13membrane protein, partial [Nannochloropsis gaditan... [more]
gi|751839977|emb|CEL57591.1|2.020e-828.78UPF0187 protein [Rhizoctonia solani AG-1 IB][more]
gi|1021835088|gb|KZP23433.1|2.066e-829.58UPF0187-domain-containing protein [Fibularhizocton... [more]
gi|551330710|ref|WP_022950152.1|2.581e-832.79membrane protein [Methylohalobius crimeensis][more]
gi|576981148|gb|EUC53891.1|5.311e-828.78bestrophin protein [Rhizoctonia solani AG-3 Rhs1AP... [more]
gi|660971256|gb|KEP54926.1|5.498e-828.78bestrophin protein [Rhizoctonia solani 123E][more]
gi|924113974|emb|CUA77434.1|6.071e-828.06hypothetical protein RSOLAG22IIIB_02448 [Rhizocton... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10058rna10058Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications