rna10045, rna10045 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10045
Unique Name	rna10045
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1479
Alignment location	KK037260.1:92097..92928 -

Link to JBrowse

Properties


Property Name	Value
Product	mitochondrial protein translocase family
Orig transcript id	gnl\|cribi\|Naga_100172g11.4634.mrna
Orig protein id	gnl\|cribi\|Naga_100172g11.4634
Gene	Tim13
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037260.1	supercontig	KK037260.1:92097..92928 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Tim13	gene9747	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10045	rna10045-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20661.1	cds10014	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037260.1:92097..92928-
coding sequence from alignment at KK037260.1:92097..92928-

mRNA sequence

>rna10045 ID=rna10045|Name=rna10045|organism=Nannochloropsis gaditana|type=mRNA|length=1479bp
ATGGCAATGGCTATAATGAGGACGGGATCTGAACACGTCAAACTCCTCTC
TCTGTTGGTAATCGTCGCGCTTTTGTTCGTGTCTGGGATAAGCGCCGATA
GCCATCGCAGACGGAAGAGCACAGCCCATGGCGGGTGCGCGAGTGCCAGC
TTTATCACCCCTCCTATGGCTCACGGGGCTAATTACGGAAGGGGTAGAAG
TGTTCCCTCCAGCCCTAGCGCTTTCACCCAAGCACCACGCGTGGACCTTG
GGGGCCTCCGTCAAGCCAAGGGAAGGACAGGGAGGGGTGGGTCCTTATTC
ATGCAATCGAAAGATTATTATGACATTCTCGGGGTCTCGCGTAGCGCCAC
GAAGCAGGAGATCAAGAAGGCCTATCGGAAACTGGCACTGCGCTGGCACC
CGGACGTCTGCAAGGAAGAGGGGGCGGCGGATAAATTCAAGGAGGTGAAC
AAGGCTTACGAGGCGCTCAGCGACGAGGAGAAGCGGGCACGCTACGATCG
CTTTGGGGAGGCGGGCGTGGAGGGTCGGGGCTTCGGGGGGGGGGCACAAT
TCGTGGACGACTTCGATATTGGCGACATTTTCGACTCGTTCTTCGGAGGA
GCCGGCGGAGGACGTGGCGGAGGGGGAAGGCGGGGTCCCGGCGGGCGGCG
CACCCCCCAGGTGGTGCCAGGAGACGATTTGCGGCTGGACCTGACTGTTC
CCTTCAGCACCTCCATCTTTGGGGCCGAGGAGAAGGTACGCATCAACCAC
TTGGAGACATGCAAGACCTGCAACGGCTCCGGCGCCAAGAAAGGGAGCCC
CTCCCGCGTCTGCGGGAAATGCCAAGGGAACGGGGTGGTGGTGCAGGTCC
AACGCACCGCCTTCGGCATCATGCAGACGCAAGTCGTGTGCGACCAGTGC
GACGGGACCGGCGAGGTGGTGGCGGAGAAATGCGGGGACTGCAAGGGAGC
GGGGGCCCTCCAGACCAACAAACAGATCAAGATCGACATCCCCGCCGGCG
TGCAGGACGGTACCAAGCTACGCATCAAGGGGGAAGGCGACGCCGGCCAA
CGCGGCGGCCCATCCGGAGACCTCTACGTCTTCCTCTCTGTGGAGGTGGA
CAAGCGCTTCCGGCGGGAAGGCATCGATTTGTACACGGACCTGAGCATCG
ACTACTTGGACGCCATCTTGGGGAGTGAGAAGCCGGTTCCCACCGCGGAT
GGGAAAGAGGAGGTGGTTCAGATTCCCTCGGGGACCCAACCTACGACCCG
CATCACCCTCAAGGGCAAGGGCGTGCCGCGTTTGGGACAGCCCAACCTTC
GCGGTGACCAGATTGTGAACGTGGTGGTGAACTTCCCCACCAAGCTTTCA
AGCAAAGAGAAGGAGCTTCTCCAGAAGCTAAGGACGGTGCAAGGAGGGGC
GACGGGCGTGAAAGGAGGGCAGGGTGTTGGAAAGGAGAGCAAAGGCATGG
GGGGGTGGTTTGGAGGGAGCAGCAAGTAA

protein sequence of rna10045

>rna10045-protein ID=rna10045-protein|Name=rna10045|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMGVTT
MHSIVNSNEVLLEILGGIIFLLKDVECLRTTNVRLGAGGGGQLEELVMAE
QQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEF
VLGRVQRSAQRGQGGGMQ

mRNA from alignment at KK037260.1:92097..92928-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10045 ID=rna10045|Name=rna10045|organism=Nannochloropsis gaditana|type=mRNA|length=832bp|location=Sequence derived from alignment at KK037260.1:92097..92928- (Nannochloropsis gaditana)
ATGTCTTGGTTTGGCTTCGGTGGTAAGAAGGAGGACACACAAGAAAGCTC
ATATGATTTCTCAAGCTCAGCCAGCGGATTTGAGGAAAGCGGAGGAGGGG
TTGGCGCGTATGACTCCTCACTGGGCGGGGGCGGTATGGGAGGTGAGTGA
AAGGCAGCAAGGCTTCGTGGGAATGCAAAACAGTAACTACCATGCATAGC
ATAGTAAACAGTAATGAGGTGCTCCTTGAGATTTTAGGGGGTATTATTTT
TTTGCTGAAAGATGTAGAATGCTTGAGGACGACGAATGTGAGTCAGGAAG
GAGCGGGCAGGGCCTTAAGAAAAAAGCATAAATTGTAGGGCATCAGACAG
GCGTACATGGGGTGAAATTCGAGCACACAAAGACAGACGTTTACTTTTTC
CTCAGTCTTTGTCACTCATGTCTTGCAACGCAGGGCTCGGGGCCGGGGGC
GGAGGACAGCTCGAAGAGCTGGTCATGGCGGAGCAGCAGAAGGCGCTGGT
CCAATCTGTGATCGCGCGCTTGACAGAGATGGCATTTGAAACCTGCATCA
CTAAGCCGGCATCCTCCTTATCAAGCGGGGAGCAGAGCTGCATACAGGTA
CGGGGTGAGAAGTCCGGTGCCAGGGGCAGAATATCGCCCAGGTGGAGAGA
GAGAATGCACTGCCTGTGAGCGAGTATCGCGGGGGAGGTCGTCCCGGCGC
ACTCGTCAAACTCAGTACTTATCCCTTCACCTTCTGCAGGCGACTGTGGC
AAAGTACCTGGACACGTCTGAGTTTGTGCTGGGACGTGTGCAACGATCGG
CGCAGCGCGGTCAGGGGGGCGGTATGCAGTAG

Coding sequence (CDS) from alignment at KK037260.1:92097..92928-

>rna10045 ID=rna10045|Name=rna10045|organism=Nannochloropsis gaditana|type=CDS|length=2028bp|location=Sequence derived from alignment at KK037260.1:92097..92928- (Nannochloropsis gaditana)
GCGACTGTGGCAAAGTACCTGGACACGTCTGAGTTTGTGCTGGGACGTGT
GCAACGATCGGCGCAGCGCGGTCAGGGGGGCGGTATGCAGTAGGGCTCGG
GGCCGGGGGCGGAGGACAGCTCGAAGAGCTGGTCATGGCGGAGCAGCAGA
AGGCGCTGGTCCAATCTGTGATCGCGCGCTTGACAGAGATGGCATTTGAA
ACCTGCATCACTAAGCCGGCATCCTCCTTATCAAGCGGGGAGCAGAGCTG
CATACAGTAACTACCATGCATAGCATAGTAAACAGTAATGAGGTGCTCCT
TGAGATTTTAGGGGGTATTATTTTTTTGCTGAAAGATGTAGAATGCTTGA
GGACGACGAATGTGAATGTCTTGGTTTGGCTTCGGTGGTAAGAAGGAGGA
CACACAAGAAAGCTCATATGATTTCTCAAGCTCAGCCAGCGGATTTGAGG
AAAGCGGAGGAGGGGTTGGCGCGTATGACTCCTCACTGGGCGGGGGCGGT
ATGGGAGGCGACTGTGGCAAAGTACCTGGACACGTCTGAGTTTGTGCTGG
GACGTGTGCAACGATCGGCGCAGCGCGGTCAGGGGGGCGGTATGCAGTAG
GGCTCGGGGCCGGGGGCGGAGGACAGCTCGAAGAGCTGGTCATGGCGGAG
CAGCAGAAGGCGCTGGTCCAATCTGTGATCGCGCGCTTGACAGAGATGGC
ATTTGAAACCTGCATCACTAAGCCGGCATCCTCCTTATCAAGCGGGGAGC
AGAGCTGCATACAGTAACTACCATGCATAGCATAGTAAACAGTAATGAGG
TGCTCCTTGAGATTTTAGGGGGTATTATTTTTTTGCTGAAAGATGTAGAA
TGCTTGAGGACGACGAATGTGAATGTCTTGGTTTGGCTTCGGTGGTAAGA
AGGAGGACACACAAGAAAGCTCATATGATTTCTCAAGCTCAGCCAGCGGA
TTTGAGGAAAGCGGAGGAGGGGTTGGCGCGTATGACTCCTCACTGGGCGG
GGGCGGTATGGGAGGCGACTGTGGCAAAGTACCTGGACACGTCTGAGTTT
GTGCTGGGACGTGTGCAACGATCGGCGCAGCGCGGTCAGGGGGGCGGTAT
GCAGTAGGGCTCGGGGCCGGGGGCGGAGGACAGCTCGAAGAGCTGGTCAT
GGCGGAGCAGCAGAAGGCGCTGGTCCAATCTGTGATCGCGCGCTTGACAG
AGATGGCATTTGAAACCTGCATCACTAAGCCGGCATCCTCCTTATCAAGC
GGGGAGCAGAGCTGCATACAGTAACTACCATGCATAGCATAGTAAACAGT
AATGAGGTGCTCCTTGAGATTTTAGGGGGTATTATTTTTTTGCTGAAAGA
TGTAGAATGCTTGAGGACGACGAATGTGAATGTCTTGGTTTGGCTTCGGT
GGTAAGAAGGAGGACACACAAGAAAGCTCATATGATTTCTCAAGCTCAGC
CAGCGGATTTGAGGAAAGCGGAGGAGGGGTTGGCGCGTATGACTCCTCAC
TGGGCGGGGGCGGTATGGGAGGCGACTGTGGCAAAGTACCTGGACACGTC
TGAGTTTGTGCTGGGACGTGTGCAACGATCGGCGCAGCGCGGTCAGGGGG
GCGGTATGCAGTAGGGCTCGGGGCCGGGGGCGGAGGACAGCTCGAAGAGC
TGGTCATGGCGGAGCAGCAGAAGGCGCTGGTCCAATCTGTGATCGCGCGC
TTGACAGAGATGGCATTTGAAACCTGCATCACTAAGCCGGCATCCTCCTT
ATCAAGCGGGGAGCAGAGCTGCATACAGTAACTACCATGCATAGCATAGT
AAACAGTAATGAGGTGCTCCTTGAGATTTTAGGGGGTATTATTTTTTTGC
TGAAAGATGTAGAATGCTTGAGGACGACGAATGTGAATGTCTTGGTTTGG
CTTCGGTGGTAAGAAGGAGGACACACAAGAAAGCTCATATGATTTCTCAA
GCTCAGCCAGCGGATTTGAGGAAAGCGGAGGAGGGGTTGGCGCGTATGAC
TCCTCACTGGGCGGGGGCGGTATGGGAG

Synonyms

Publications