EWM20661.1, cds10014 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|585100466|gb|EWM20661.1| (mitochondrial protein translocase family [Nannochloropsis gaditana]) HSP 1 Score: 334.724 bits (857), Expect = 4.007e-116 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query: 1 MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMGVTTMHSIVNSNEVLLEILGGIIFLLKDVECLRTTNVRLGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGGMQ 168
MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMGVTTMHSIVNSNEVLLEILGGIIFLLKDVECLRTTNVRLGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGGMQ
Sbjct: 1 MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMGVTTMHSIVNSNEVLLEILGGIIFLLKDVECLRTTNVRLGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGGMQ 168
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|553180121|ref|XP_005853348.1| (mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526] >gi|553192625|ref|XP_005855610.1| mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526] >gi|422293441|gb|EKU20741.1| mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526] >gi|422295713|gb|EKU23012.1| mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 238.424 bits (607), Expect = 1.488e-78 Identity = 131/168 (77.98%), Postives = 131/168 (77.98%), Query Frame = 0
Query: 1 MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMGVTTMHSIVNSNEVLLEILGGIIFLLKDVECLRTTNVRLGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGGMQ 168
MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMG LGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGGMQ
Sbjct: 1 MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMG------------------------------------GLGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGGMQ 132
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|298705133|emb|CBJ28576.1| (Mitochondrial protein import TIM8.13 complex subunit, Tim13 homolog [Ectocarpus siliculosus]) HSP 1 Score: 79.337 bits (194), Expect = 5.897e-16 Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 0
Query: 87 AGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGG 166
+ G G L+ + EQQKA +Q++++RLT++AF CI KP+SSLSS EQSCI ATV KY DTSEFVLGR+ +S QGGG
Sbjct: 47 SAGMGDLQAAMQIEQQKAQMQAIVSRLTDLAFTKCIQKPSSSLSSSEQSCINATVLKYFDTSEFVLGRLMKSQ---QGGG 123
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|397642224|gb|EJK75100.1| (hypothetical protein THAOC_03188 [Thalassiosira oceanica]) HSP 1 Score: 73.559 bits (179), Expect = 8.671e-14 Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 0
Query: 87 AGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCIT-KPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGGM 167
A G G +++ MA +Q+ +VQ+VI +LT+ AFE CIT KP SL + +C+ A V K+LDT+EF+ GR++R + GGGM
Sbjct: 47 ASGLGDMQQFSMALKQQMMVQTVINQLTDKAFEKCITGKPGDSLGGRDAACVNAVVCKWLDTNEFMTGRLER---KMGGGGM 125
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|953488176|emb|CEG48193.1| (mitochondrial protein translocase family [Plasmopara halstedii]) HSP 1 Score: 72.7886 bits (177), Expect = 1.786e-13 Identity = 52/159 (32.70%), Postives = 77/159 (48.43%), Query Frame = 0
Query: 1 MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMGVTTMHSIVNSNEVLLEILGGIIFLLKDVECLRTTNVRLGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETC-ITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRS 158
MS+FGFG KE S SS + +EE YD S + S +SN LGG + G ++++L+M EQQ+AL+Q I+++T +A++ C +KP S LS E+ CI+ YLDTS FV+ R+ +S
Sbjct: 1 MSFFGFGKSKEPEPSIS---SSDSYAYEEPN-----YDYSAPAVSSSFDSQSSTPSSN------LGGGT-----------------SSGAAEMQQLIMEEQQRALIQQAISKITALAWDKCSASKPDSELSYKEKDCIKNVTLAYLDTSMFVVHRLNKS 128
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|301091785|ref|XP_002896069.1| (Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4] >gi|262095023|gb|EEY53075.1| Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4]) HSP 1 Score: 71.633 bits (174), Expect = 5.517e-13 Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 0
Query: 86 GAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETC-ITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRS 158
+ G ++++L+M EQQ+AL+Q I+++T +A+E C TKP S LSS E+ CI+ YLDTS F + R+ +S
Sbjct: 54 ASTGAAEMQQLLMEEQQRALIQQAISKITALAWEKCSATKPDSELSSKEKDCIKNVTLAYLDTSMFAVHRLNKS 127
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|567975344|gb|ETL25899.1| (hypothetical protein L916_20307 [Phytophthora parasitica] >gi|570936672|gb|ETP01929.1| hypothetical protein F441_20899 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 71.633 bits (174), Expect = 5.650e-13 Identity = 31/71 (43.66%), Postives = 50/71 (70.42%), Query Frame = 0
Query: 89 GGGQLEELVMAEQQKALVQSVIARLTEMAFETC-ITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRS 158
G ++++L+M EQQ+AL+Q I+++T +A++ C +KP S LSS E+ CI+ YLDTS FV+ R+ +S
Sbjct: 58 GAAEMQQLIMEEQQRALIQQAISKITALAWDKCSASKPDSELSSKEKDCIKNVTLAYLDTSMFVVHRLNKS 128
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|566009148|gb|ETI32059.1| (hypothetical protein F443_21042, partial [Phytophthora parasitica P1569] >gi|568034702|gb|ETM32369.1| hypothetical protein L914_20199, partial [Phytophthora parasitica]) HSP 1 Score: 71.633 bits (174), Expect = 8.490e-13 Identity = 31/71 (43.66%), Postives = 50/71 (70.42%), Query Frame = 0
Query: 89 GGGQLEELVMAEQQKALVQSVIARLTEMAFETC-ITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRS 158
G ++++L+M EQQ+AL+Q I+++T +A++ C +KP S LSS E+ CI+ YLDTS FV+ R+ +S
Sbjct: 78 GAAEMQQLIMEEQQRALIQQAISKITALAWDKCSASKPDSELSSKEKDCIKNVTLAYLDTSMFVVHRLNKS 148
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|567946637|gb|ETK72443.1| (hypothetical protein L915_20446, partial [Phytophthora parasitica] >gi|568004798|gb|ETL79108.1| hypothetical protein L917_20179, partial [Phytophthora parasitica] >gi|570312854|gb|ETO60802.1| hypothetical protein F444_21048, partial [Phytophthora parasitica P1976]) HSP 1 Score: 71.633 bits (174), Expect = 8.765e-13 Identity = 31/71 (43.66%), Postives = 50/71 (70.42%), Query Frame = 0
Query: 89 GGGQLEELVMAEQQKALVQSVIARLTEMAFETC-ITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRS 158
G ++++L+M EQQ+AL+Q I+++T +A++ C +KP S LSS E+ CI+ YLDTS FV+ R+ +S
Sbjct: 78 GAAEMQQLIMEEQQRALIQQAISKITALAWDKCSASKPDSELSSKEKDCIKNVTLAYLDTSMFVVHRLNKS 148
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|551590621|ref|XP_005779672.1| (hypothetical protein EMIHUDRAFT_64434 [Emiliania huxleyi CCMP1516] >gi|551590702|ref|XP_005779705.1| hypothetical protein EMIHUDRAFT_64409 [Emiliania huxleyi CCMP1516] >gi|485632192|gb|EOD27243.1| hypothetical protein EMIHUDRAFT_64434 [Emiliania huxleyi CCMP1516] >gi|485632225|gb|EOD27276.1| hypothetical protein EMIHUDRAFT_64409 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 69.3218 bits (168), Expect = 1.370e-12 Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 0
Query: 92 QLEEL---VMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQG 164
QL++L + EQQKA++Q+ I +LTE F+ C+TKP + L S E SCI +YLD+S FV+ R+ + +RGQG
Sbjct: 10 QLKDLQGFMETEQQKAVIQAAINKLTETCFDKCVTKPGAKLDSSEASCISNCAGRYLDSSVFVVSRMMQ--KRGQG 83 The following BLAST results are available for this feature:
BLAST of EWM20661.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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