EWM20661.1, cds10014 (CDS) Nannochloropsis gaditana

Overview
NameEWM20661.1
Unique Namecds10014
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037260.1:92787..92928 -
Alignment locationKK037260.1:92638..92745 -
Alignment locationKK037260.1:92332..92495 -
Alignment locationKK037260.1:92097..92189 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20661.1
Productmitochondrial protein translocase family
Orig transcript idgnl|cribi|Naga_100172g11.4634.mrna
GeneTim13
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:92787..92928 -
KK037260.1supercontigKK037260.1:92638..92745 -
KK037260.1supercontigKK037260.1:92332..92495 -
KK037260.1supercontigKK037260.1:92097..92189 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR004217Tim10/DDP_fam_Znf
Homology
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|585100466|gb|EWM20661.1| (mitochondrial protein translocase family [Nannochloropsis gaditana])

HSP 1 Score: 334.724 bits (857), Expect = 4.007e-116
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query:    1 MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMGVTTMHSIVNSNEVLLEILGGIIFLLKDVECLRTTNVRLGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGGMQ 168
            MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMGVTTMHSIVNSNEVLLEILGGIIFLLKDVECLRTTNVRLGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGGMQ
Sbjct:    1 MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMGVTTMHSIVNSNEVLLEILGGIIFLLKDVECLRTTNVRLGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGGMQ 168          
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|553180121|ref|XP_005853348.1| (mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526] >gi|553192625|ref|XP_005855610.1| mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526] >gi|422293441|gb|EKU20741.1| mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526] >gi|422295713|gb|EKU23012.1| mitochondrial protein translocase family [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 238.424 bits (607), Expect = 1.488e-78
Identity = 131/168 (77.98%), Postives = 131/168 (77.98%), Query Frame = 0
Query:    1 MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMGVTTMHSIVNSNEVLLEILGGIIFLLKDVECLRTTNVRLGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGGMQ 168
            MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMG                                     LGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGGMQ
Sbjct:    1 MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMG------------------------------------GLGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGGMQ 132          
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|298705133|emb|CBJ28576.1| (Mitochondrial protein import TIM8.13 complex subunit, Tim13 homolog [Ectocarpus siliculosus])

HSP 1 Score: 79.337 bits (194), Expect = 5.897e-16
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 0
Query:   87 AGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGG 166
            + G G L+  +  EQQKA +Q++++RLT++AF  CI KP+SSLSS EQSCI ATV KY DTSEFVLGR+ +S    QGGG
Sbjct:   47 SAGMGDLQAAMQIEQQKAQMQAIVSRLTDLAFTKCIQKPSSSLSSSEQSCINATVLKYFDTSEFVLGRLMKSQ---QGGG 123          
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|397642224|gb|EJK75100.1| (hypothetical protein THAOC_03188 [Thalassiosira oceanica])

HSP 1 Score: 73.559 bits (179), Expect = 8.671e-14
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 0
Query:   87 AGGGGQLEELVMAEQQKALVQSVIARLTEMAFETCIT-KPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGGGM 167
            A G G +++  MA +Q+ +VQ+VI +LT+ AFE CIT KP  SL   + +C+ A V K+LDT+EF+ GR++R   +  GGGM
Sbjct:   47 ASGLGDMQQFSMALKQQMMVQTVINQLTDKAFEKCITGKPGDSLGGRDAACVNAVVCKWLDTNEFMTGRLER---KMGGGGM 125          
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|953488176|emb|CEG48193.1| (mitochondrial protein translocase family [Plasmopara halstedii])

HSP 1 Score: 72.7886 bits (177), Expect = 1.786e-13
Identity = 52/159 (32.70%), Postives = 77/159 (48.43%), Query Frame = 0
Query:    1 MSWFGFGGKKEDTQESSYDFSSSASGFEESGGGVGAYDSSLGGGGMGVTTMHSIVNSNEVLLEILGGIIFLLKDVECLRTTNVRLGAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETC-ITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRS 158
            MS+FGFG  KE     S   SS +  +EE       YD S         +  S  +SN      LGG                   + G  ++++L+M EQQ+AL+Q  I+++T +A++ C  +KP S LS  E+ CI+     YLDTS FV+ R+ +S
Sbjct:    1 MSFFGFGKSKEPEPSIS---SSDSYAYEEPN-----YDYSAPAVSSSFDSQSSTPSSN------LGGGT-----------------SSGAAEMQQLIMEEQQRALIQQAISKITALAWDKCSASKPDSELSYKEKDCIKNVTLAYLDTSMFVVHRLNKS 128          
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|301091785|ref|XP_002896069.1| (Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4] >gi|262095023|gb|EEY53075.1| Mitochondrial Protein Translocase (MPT) Family [Phytophthora infestans T30-4])

HSP 1 Score: 71.633 bits (174), Expect = 5.517e-13
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 0
Query:   86 GAGGGGQLEELVMAEQQKALVQSVIARLTEMAFETC-ITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRS 158
             + G  ++++L+M EQQ+AL+Q  I+++T +A+E C  TKP S LSS E+ CI+     YLDTS F + R+ +S
Sbjct:   54 ASTGAAEMQQLLMEEQQRALIQQAISKITALAWEKCSATKPDSELSSKEKDCIKNVTLAYLDTSMFAVHRLNKS 127          
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|567975344|gb|ETL25899.1| (hypothetical protein L916_20307 [Phytophthora parasitica] >gi|570936672|gb|ETP01929.1| hypothetical protein F441_20899 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 71.633 bits (174), Expect = 5.650e-13
Identity = 31/71 (43.66%), Postives = 50/71 (70.42%), Query Frame = 0
Query:   89 GGGQLEELVMAEQQKALVQSVIARLTEMAFETC-ITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRS 158
            G  ++++L+M EQQ+AL+Q  I+++T +A++ C  +KP S LSS E+ CI+     YLDTS FV+ R+ +S
Sbjct:   58 GAAEMQQLIMEEQQRALIQQAISKITALAWDKCSASKPDSELSSKEKDCIKNVTLAYLDTSMFVVHRLNKS 128          
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|566009148|gb|ETI32059.1| (hypothetical protein F443_21042, partial [Phytophthora parasitica P1569] >gi|568034702|gb|ETM32369.1| hypothetical protein L914_20199, partial [Phytophthora parasitica])

HSP 1 Score: 71.633 bits (174), Expect = 8.490e-13
Identity = 31/71 (43.66%), Postives = 50/71 (70.42%), Query Frame = 0
Query:   89 GGGQLEELVMAEQQKALVQSVIARLTEMAFETC-ITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRS 158
            G  ++++L+M EQQ+AL+Q  I+++T +A++ C  +KP S LSS E+ CI+     YLDTS FV+ R+ +S
Sbjct:   78 GAAEMQQLIMEEQQRALIQQAISKITALAWDKCSASKPDSELSSKEKDCIKNVTLAYLDTSMFVVHRLNKS 148          
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|567946637|gb|ETK72443.1| (hypothetical protein L915_20446, partial [Phytophthora parasitica] >gi|568004798|gb|ETL79108.1| hypothetical protein L917_20179, partial [Phytophthora parasitica] >gi|570312854|gb|ETO60802.1| hypothetical protein F444_21048, partial [Phytophthora parasitica P1976])

HSP 1 Score: 71.633 bits (174), Expect = 8.765e-13
Identity = 31/71 (43.66%), Postives = 50/71 (70.42%), Query Frame = 0
Query:   89 GGGQLEELVMAEQQKALVQSVIARLTEMAFETC-ITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRS 158
            G  ++++L+M EQQ+AL+Q  I+++T +A++ C  +KP S LSS E+ CI+     YLDTS FV+ R+ +S
Sbjct:   78 GAAEMQQLIMEEQQRALIQQAISKITALAWDKCSASKPDSELSSKEKDCIKNVTLAYLDTSMFVVHRLNKS 148          
BLAST of EWM20661.1 vs. NCBI_GenBank
Match: gi|551590621|ref|XP_005779672.1| (hypothetical protein EMIHUDRAFT_64434 [Emiliania huxleyi CCMP1516] >gi|551590702|ref|XP_005779705.1| hypothetical protein EMIHUDRAFT_64409 [Emiliania huxleyi CCMP1516] >gi|485632192|gb|EOD27243.1| hypothetical protein EMIHUDRAFT_64434 [Emiliania huxleyi CCMP1516] >gi|485632225|gb|EOD27276.1| hypothetical protein EMIHUDRAFT_64409 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 69.3218 bits (168), Expect = 1.370e-12
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 0
Query:   92 QLEEL---VMAEQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQG 164
            QL++L   +  EQQKA++Q+ I +LTE  F+ C+TKP + L S E SCI     +YLD+S FV+ R+ +  +RGQG
Sbjct:   10 QLKDLQGFMETEQQKAVIQAAINKLTETCFDKCVTKPGAKLDSSEASCISNCAGRYLDSSVFVVSRMMQ--KRGQG 83          
The following BLAST results are available for this feature:
BLAST of EWM20661.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100466|gb|EWM20661.1|4.007e-116100.00mitochondrial protein translocase family [Nannochl... [more]
gi|553180121|ref|XP_005853348.1|1.488e-7877.98mitochondrial protein translocase family [Nannochl... [more]
gi|298705133|emb|CBJ28576.1|5.897e-1658.75Mitochondrial protein import TIM8.13 complex subun... [more]
gi|397642224|gb|EJK75100.1|8.671e-1446.34hypothetical protein THAOC_03188 [Thalassiosira oc... [more]
gi|953488176|emb|CEG48193.1|1.786e-1332.70mitochondrial protein translocase family [Plasmopa... [more]
gi|301091785|ref|XP_002896069.1|5.517e-1343.24Mitochondrial Protein Translocase (MPT) Family [Ph... [more]
gi|567975344|gb|ETL25899.1|5.650e-1343.66hypothetical protein L916_20307 [Phytophthora para... [more]
gi|566009148|gb|ETI32059.1|8.490e-1343.66hypothetical protein F443_21042, partial [Phytopht... [more]
gi|567946637|gb|ETK72443.1|8.765e-1343.66hypothetical protein L915_20446, partial [Phytopht... [more]
gi|551590621|ref|XP_005779672.1|1.370e-1246.05hypothetical protein EMIHUDRAFT_64434 [Emiliania h... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10045rna10045Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications