rna10040, rna10040 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10040
Unique Name	rna10040
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1302
Alignment location	KK037260.1:73391..74624 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100172g5.4631.mrna
Orig protein id	gnl\|cribi\|Naga_100172g5.4631
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037260.1	supercontig	KK037260.1:73391..74624 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100172g5	gene9742	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10040	rna10040-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20658.1	cds10009	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037260.1:73391..74624-
coding sequence from alignment at KK037260.1:73391..74624-

mRNA sequence

>rna10040 ID=rna10040|Name=rna10040|organism=Nannochloropsis gaditana|type=mRNA|length=1302bp
ATGTATAGCAACGACATCTCTAGCAATCCCGATGATTGCGGAGGAGAAGC
TCTTCAGGGAATAGGGGATGGCATGCGAGCAATGATGGATGACCCCCACG
GTGGTACCGAAGTCCTTTTTATCCGTCATGCCGAGTCTCGCAACAATGTC
CTACACGCCGAGGTGGGGGCGCGATACAATTTCGACCCAAATTTACATGA
ACTTATGGAAAAGGAGGTTGCTTCTCTGCGTAGCGAAGACGCTGATCTCA
GTGAGAAGGGTTTTGTGCAGGCGGAGCGGTTGGGCGAATACCTAGCCGAG
CGCCTAAGACAACGCCGGGTGCTCGTCGTCACCTCTCCCATGCAAAGGGC
GATAAAGACCATCAGACCCTTGGTCACTCGGCTCGGTATAGGCCCTGAAG
ACTTCGCTTGCTACGGTCGCTACTTCGAGGTGGGCGGGTGTTACCTGCAA
GATCGCGTCTACACGGGCACCTCCAGAGCCGAGCTTGAGGGAACCTACAA
GCTCCAGTGCTTTGACGTGGAAGAGGAAGGATGGTATGCCCACTCGAAAG
AGCGGGAGGGACATCCCCAAGCTCTTCTGCGCTGTGAACAGGCCTGGCTC
TGGATTCAGGACGTACTTCTGGCCGGGGCGCTCCCGAACGCCGTCGACGG
GGATGGGAGGGGGGGAGGAAGGGGGGGAGGGAGGAGCTACGACACCATCG
TTGTCGTGGGGCACGGAGAGTTCATGCATTATGTCATGAAAAAGATGGTT
GGAGGCGGCTCGCTGTCGTCCGCCCTGGGCTTTGTACACGGCAACACAGG
CATCAGCACGCTGCAGTACCATCCGTCTCGGGGCGCCTTAGTCCGCAGTT
TGAATGTTTTGGAACATCTTCCTCCCTCCCTGAGGACTGGTCATGCGCTT
GCTGATGGGTGGTGGGAAGTTGTGCCGCGTCCACTTTCCTCATCGCAGAG
GCCGTTGATACACCGCTTTGAAAACCTCCCGGAGGAGGAGCCCGGCTTGC
ACATGGCCACGCAGGCAATTCGGCAACGCTACCTCCCTCCCTCCCTCCCT
CCCTACCTGACTGACGTGGACGCGCATTCCGTGCATTTTTTGGCCTTATC
GCACGGGCAGGCTTCGGTGGTAGGACTCGCTTTATATGACGTCCGGGCAA
ACCGTCTGCGTCAGGTGTGGAAAAATCGAGAGGAGGGAAGGGGAGAGTGG
AAAAAGCGAACCCAGACTGCTAGCTCTGTCCCTCTGCGCTCCCTCGTCTT
CTCTGTAACTCTTTGTTTCCTTCTCTTCCTCCTTCCCTCTTTCTTTAGGT
AA

protein sequence of rna10040

>rna10040-protein ID=rna10040-protein|Name=rna10040|organism=Nannochloropsis gaditana|type=polypeptide|length=260bp
MLRRRHFQKVAGPWRGSTLLKPFLAIAALGILCWIRARTAQHLEASSFTP
TAQKGGPLVSGQDFRPLELTPFTGKPWRSEQVHSLHEFFGPRALLISLHI
PSGNRPIDTRSCPSGVHVVWCLRDPQGQSGGWSGTFRNGSFSRMTHGFPY
AQGTDKDRMMCVILSCPDHRCWTDGCGLTRKTRSMSWYAWKRRRGRVQGR
ECQGAKKTGGSWFLSRKSMAIKVSVWRPSVALWSQAKTPSWRLNESFSRR
QVSNHQHGFL

mRNA from alignment at KK037260.1:73391..74624-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10040 ID=rna10040|Name=rna10040|organism=Nannochloropsis gaditana|type=mRNA|length=1234bp|location=Sequence derived from alignment at KK037260.1:73391..74624- (Nannochloropsis gaditana)
ATGCTTCGACGGCGTCATTTTCAGAAGGTCGCGGGGCCCTGGAGGGGCAG
TACGTTGCTAAAACCCTTTCTTGCCATCGCAGCGTTGGGAATTCTTTGTT
GGATAAGAGCGCGTACCGCCCAACATTTAGAGGCTTCGTCGTTCACTCCA
ACTGCACAAAAGGTAAGAACGCATGTCACTCTTGCATCCGATATTGCTGA
ACATGCTGTCACCTACAAACAACGATCACTTCGTTTGCTTTACGTTCAAA
GGGTGGACCCCTGGTCTCGGGGCAAGACTTCCGCCCTCTGGAGCTCACGC
CATTCACGGGAAAGCCATGGCGATCGGAGCAGGTACATTCTTTGCACGAG
TTTTTTGGGCCTCGGGCTCTCCTTATATCTCTGCATATTCCTTCTGGAAA
CCGTCCTATAGACACTAGAAGTTGTCCCAGTGGTGTCCACGTCGTTTGGT
GTCTGCGAGATCCACAAGGTCAAAGCGGAGGATGGAGCGGTACGTTTAGA
AATGGATCTTTCTCGAGAATGACACATGGCTTCCCGTATGCCCAGGGCAC
TGACAAAGACAGGATGATGTGCGTGATTCTATCCTGTCCCGATCACAGGT
GTTGGACGGATGGCTGTGGTTTGACGAGAAAGACCAGATCAATGTCTTGG
TACGCCTGGAAGCGGAGGCGGGGACGGGTGCAGGGGAGGGAATGCCAGGG
GGCGAAGAAGACAGGAGGTTCTTGGTTTTTGAGCAGAAAAAGTATGGCTA
TCAAGGTCTCAGGTGAGGAGGAAGCTAAGAAGAAGTATCATAAGATGATT
TCTTCCCGAGGTCCTCGGCCTTTATGTGGCGCCTGTAATGTAGCTTTTTC
GCGTCCTCTTTCAACCAACCAGTTTGGGAGTCCGACAGCCTTTACAACGG
ACCAATAAATTTGTCGAAATGCCACAAATGACACAGTTTGGCGCCCATCG
GTGGCCTTGTGGAGCCAGGCGAAGACGCCCTCATGGCGGCTAAACGAGAG
CTTCTCGAGGAGGCAGGTCTCGGTATGTGCATGATATCCACGCAACCCTC
TTTTCTCCTCTCTATTGTGTGGTCTCTTTTATTCTTGCCTTAGATTCCCT
CTTTCGTTTTCTTCCGCCTCGATGCACCGTAAATAGTGCGACAAAGCGAC
CATACAACCATCTGAAACTTATTGTTTTAACCAGTGCAATCGGCTCGTAT
CACTCCCAAGAATCACCAACATGGATTTCTCTAG

Coding sequence (CDS) from alignment at KK037260.1:73391..74624-

>rna10040 ID=rna10040|Name=rna10040|organism=Nannochloropsis gaditana|type=CDS|length=3132bp|location=Sequence derived from alignment at KK037260.1:73391..74624- (Nannochloropsis gaditana)
AATCACCAACATGGATTTCTCTAGTTTGGCGCCCATCGGTGGCCTTGTGG
AGCCAGGCGAAGACGCCCTCATGGCGGCTAAACGAGAGCTTCTCGAGGAG
GCAGGTCTCGGGTGGACCCCTGGTCTCGGGGCAAGACTTCCGCCCTCTGG
AGCTCACGCCATTCACGGGAAAGCCATGGCGATCGGAGCAGGTACATTCT
TTGCACGAGTTTTTTGGGCCTCGGGCTCTCCTTATATCTCTGCATATTCC
TTCTGGAAACCGTCCTATAGACACTAGAAGTTGTCCCAGTGGTGTCCACG
TCGTTTGGTGTCTGCGAGATCCACAAGGTCAAAGCGGAGGATGGAGCGGT
ACGTTTAGAAATGGATCTTTCTCGAGAATGACACATGGCTTCCCGTATGC
CCAGGGCACTGACAAAGACAGGATGATGTGCGTGATTCTATCCTGTCCCG
ATCACAGGTGTTGGACGGATGGCTGTGGTTTGACGAGAAAGACCAGATCA
ATGTCTTGGTACGCCTGGAAGCGGAGGCGGGGACGGGTGCAGGGGAGGGA
ATGCCAGGGGGCGAAGAAGACAGGAGGTTCTTGGTTTTTGAGCAGAAAAA
GTATGGCTATCAAGGTCTCAGATGCTTCGACGGCGTCATTTTCAGAAGGT
CGCGGGGCCCTGGAGGGGCAGTACGTTGCTAAAACCCTTTCTTGCCATCG
CAGCGTTGGGAATTCTTTGTTGGATAAGAGCGCGTACCGCCCAACATTTA
GAGGCTTCGTCGTTCACTCCAACTGCACAAAAGAATCACCAACATGGATT
TCTCTAGTTTGGCGCCCATCGGTGGCCTTGTGGAGCCAGGCGAAGACGCC
CTCATGGCGGCTAAACGAGAGCTTCTCGAGGAGGCAGGTCTCGGGTGGAC
CCCTGGTCTCGGGGCAAGACTTCCGCCCTCTGGAGCTCACGCCATTCACG
GGAAAGCCATGGCGATCGGAGCAGGTACATTCTTTGCACGAGTTTTTTGG
GCCTCGGGCTCTCCTTATATCTCTGCATATTCCTTCTGGAAACCGTCCTA
TAGACACTAGAAGTTGTCCCAGTGGTGTCCACGTCGTTTGGTGTCTGCGA
GATCCACAAGGTCAAAGCGGAGGATGGAGCGGTACGTTTAGAAATGGATC
TTTCTCGAGAATGACACATGGCTTCCCGTATGCCCAGGGCACTGACAAAG
ACAGGATGATGTGCGTGATTCTATCCTGTCCCGATCACAGGTGTTGGACG
GATGGCTGTGGTTTGACGAGAAAGACCAGATCAATGTCTTGGTACGCCTG
GAAGCGGAGGCGGGGACGGGTGCAGGGGAGGGAATGCCAGGGGGCGAAGA
AGACAGGAGGTTCTTGGTTTTTGAGCAGAAAAAGTATGGCTATCAAGGTC
TCAGATGCTTCGACGGCGTCATTTTCAGAAGGTCGCGGGGCCCTGGAGGG
GCAGTACGTTGCTAAAACCCTTTCTTGCCATCGCAGCGTTGGGAATTCTT
TGTTGGATAAGAGCGCGTACCGCCCAACATTTAGAGGCTTCGTCGTTCAC
TCCAACTGCACAAAAGAATCACCAACATGGATTTCTCTAGTTTGGCGCCC
ATCGGTGGCCTTGTGGAGCCAGGCGAAGACGCCCTCATGGCGGCTAAACG
AGAGCTTCTCGAGGAGGCAGGTCTCGGGTGGACCCCTGGTCTCGGGGCAA
GACTTCCGCCCTCTGGAGCTCACGCCATTCACGGGAAAGCCATGGCGATC
GGAGCAGGTACATTCTTTGCACGAGTTTTTTGGGCCTCGGGCTCTCCTTA
TATCTCTGCATATTCCTTCTGGAAACCGTCCTATAGACACTAGAAGTTGT
CCCAGTGGTGTCCACGTCGTTTGGTGTCTGCGAGATCCACAAGGTCAAAG
CGGAGGATGGAGCGGTACGTTTAGAAATGGATCTTTCTCGAGAATGACAC
ATGGCTTCCCGTATGCCCAGGGCACTGACAAAGACAGGATGATGTGCGTG
ATTCTATCCTGTCCCGATCACAGGTGTTGGACGGATGGCTGTGGTTTGAC
GAGAAAGACCAGATCAATGTCTTGGTACGCCTGGAAGCGGAGGCGGGGAC
GGGTGCAGGGGAGGGAATGCCAGGGGGCGAAGAAGACAGGAGGTTCTTGG
TTTTTGAGCAGAAAAAGTATGGCTATCAAGGTCTCAGATGCTTCGACGGC
GTCATTTTCAGAAGGTCGCGGGGCCCTGGAGGGGCAGTACGTTGCTAAAA
CCCTTTCTTGCCATCGCAGCGTTGGGAATTCTTTGTTGGATAAGAGCGCG
TACCGCCCAACATTTAGAGGCTTCGTCGTTCACTCCAACTGCACAAAAGA
ATCACCAACATGGATTTCTCTAGTTTGGCGCCCATCGGTGGCCTTGTGGA
GCCAGGCGAAGACGCCCTCATGGCGGCTAAACGAGAGCTTCTCGAGGAGG
CAGGTCTCGGGTGGACCCCTGGTCTCGGGGCAAGACTTCCGCCCTCTGGA
GCTCACGCCATTCACGGGAAAGCCATGGCGATCGGAGCAGGTACATTCTT
TGCACGAGTTTTTTGGGCCTCGGGCTCTCCTTATATCTCTGCATATTCCT
TCTGGAAACCGTCCTATAGACACTAGAAGTTGTCCCAGTGGTGTCCACGT
CGTTTGGTGTCTGCGAGATCCACAAGGTCAAAGCGGAGGATGGAGCGGTA
CGTTTAGAAATGGATCTTTCTCGAGAATGACACATGGCTTCCCGTATGCC
CAGGGCACTGACAAAGACAGGATGATGTGCGTGATTCTATCCTGTCCCGA
TCACAGGTGTTGGACGGATGGCTGTGGTTTGACGAGAAAGACCAGATCAA
TGTCTTGGTACGCCTGGAAGCGGAGGCGGGGACGGGTGCAGGGGAGGGAA
TGCCAGGGGGCGAAGAAGACAGGAGGTTCTTGGTTTTTGAGCAGAAAAAG
TATGGCTATCAAGGTCTCAGATGCTTCGACGGCGTCATTTTCAGAAGGTC
GCGGGGCCCTGGAGGGGCAGTACGTTGCTAAAACCCTTTCTTGCCATCGC
AGCGTTGGGAATTCTTTGTTGGATAAGAGCGCGTACCGCCCAACATTTAG
AGGCTTCGTCGTTCACTCCAACTGCACAAAAG

Synonyms

Publications