EWM20658.1, cds10009 (CDS) Nannochloropsis gaditana

Overview
NameEWM20658.1
Unique Namecds10009
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037260.1:74463..74624 -
Alignment locationKK037260.1:73863..74373 -
Alignment locationKK037260.1:73603..73688 -
Alignment locationKK037260.1:73391..73414 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20658.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100172g5.4631.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:74463..74624 -
KK037260.1supercontigKK037260.1:73863..74373 -
KK037260.1supercontigKK037260.1:73603..73688 -
KK037260.1supercontigKK037260.1:73391..73414 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM20658.1 vs. NCBI_GenBank
Match: gi|585100463|gb|EWM20658.1| (hypothetical protein Naga_100172g5 [Nannochloropsis gaditana])

HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0 
Query:    1 MLRRRHFQKVAGPWRGSTLLKPFLAIAALGILCWIRARTAQHLEASSFTPTAQKGGPLVSGQDFRPLELTPFTGKPWRSEQVHSLHEFFGPRALLISLHIPSGNRPIDTRSCPSGVHVVWCLRDPQGQSGGWSGTFRNGSFSRMTHGFPYAQGTDKDRMMCVILSCPDHRCWTDGCGLTRKTRSMSWYAWKRRRGRVQGRECQGAKKTGGSWFLSRKSMAIKVSVWRPSVALWSQAKTPSWRLNESFSRRQVSNHQHGFL 260
            MLRRRHFQKVAGPWRGSTLLKPFLAIAALGILCWIRARTAQHLEASSFTPTAQKGGPLVSGQDFRPLELTPFTGKPWRSEQVHSLHEFFGPRALLISLHIPSGNRPIDTRSCPSGVHVVWCLRDPQGQSGGWSGTFRNGSFSRMTHGFPYAQGTDKDRMMCVILSCPDHRCWTDGCGLTRKTRSMSWYAWKRRRGRVQGRECQGAKKTGGSWFLSRKSMAIKVSVWRPSVALWSQAKTPSWRLNESFSRRQVSNHQHGFL
Sbjct:    1 MLRRRHFQKVAGPWRGSTLLKPFLAIAALGILCWIRARTAQHLEASSFTPTAQKGGPLVSGQDFRPLELTPFTGKPWRSEQVHSLHEFFGPRALLISLHIPSGNRPIDTRSCPSGVHVVWCLRDPQGQSGGWSGTFRNGSFSRMTHGFPYAQGTDKDRMMCVILSCPDHRCWTDGCGLTRKTRSMSWYAWKRRRGRVQGRECQGAKKTGGSWFLSRKSMAIKVSVWRPSVALWSQAKTPSWRLNESFSRRQVSNHQHGFL 260
[Close]
BLAST of EWM20658.1 vs. NCBI_GenBank
Match: gi|553192637|ref|XP_005855613.1| (nudix hydrolase [Nannochloropsis gaditana CCMP526] >gi|422293444|gb|EKU20744.1| nudix hydrolase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 98.9821 bits (245), Expect = 6.445e-20
Identity = 52/81 (64.20%), Postives = 54/81 (66.67%), Query Frame = 0 
Query:    1 MLRRRHFQKVAGPWRGSTLLKPFLAIAALGILCWIRARTAQHLEASSFTPTAQKGGPLVSGQDFRPLELTPFTGKPWRSEQ 81
            MLRRRHFQKVAGPWRG                           +ASSFTPTAQKGGPLVSG+DFRPLELTPFTGKPWRSEQ
Sbjct:    1 MLRRRHFQKVAGPWRG---------------------------KASSFTPTAQKGGPLVSGKDFRPLELTPFTGKPWRSEQ 54
The following BLAST results are available for this feature:
BLAST of EWM20658.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100463|gb|EWM20658.1|0.000e+0100.00hypothetical protein Naga_100172g5 [Nannochloropsi... [more]
gi|553192637|ref|XP_005855613.1|6.445e-2064.20nudix hydrolase [Nannochloropsis gaditana CCMP526]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10040rna10040Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications