rna10037, rna10037 (mRNA) Nannochloropsis gaditana

Overview
Namerna10037
Unique Namerna10037
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length911
Alignment locationKK037260.1:66634..67400 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100172g1.4635.mrna
Orig protein idgnl|cribi|Naga_100172g1.4635
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:66634..67400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100172g1gene9739Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10037rna10037-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20662.1cds10006Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10037 ID=rna10037|Name=rna10037|organism=Nannochloropsis gaditana|type=mRNA|length=911bp
ATGCAGCTCCCTCCCCCCCCGAAACGTCAACAATGCCATCTTGTACACAC
TGGCGGATTCGGTTCACTCAACCCGGAGACGAACACCTTCATATTGGGGG
ATGCGTGGCAGGGACCTGGAGCTAACATTGTTTGCGTTCCGCACGCAGTG
CTTTGTGTTCTTGCAGCGAGGAAAGTGCCGATCTATGTGACAACGTCACG
AAACCCTTACAAGTCGCAACCCTTGCACGCAATGCCTCCCCACATCCCTG
CTTTTCCTTTTCCTTCCTAGACATGGCGCTCCAAGCTGCACATGTATGCA
CACTTGTCACGATTCTTCCTCAACATTTCTTTTTTACTTGTTTCTCATTG
GACACAGCCTCACCTCCTTCTGCCGTCAAGCCCAAGCGAGGGCAACTTCG
TGCAAGAACAAAGGACCCAACAAGAAGATCAAATACAGGCCAATGACTCC
TCCAGCCGTGATCAAGGAGACCGTGCTGCCAGCAGATGAGACTGTCGCCA
AGAAACAAAAAATTGCGAACGGCCACGGCAAAGCCTCCGCTGCCGCCGCC
GATTCTCAAGCGGCGGTCACAGTTCTGAACGACGAGAATGTCAACACCCC
GGACGCCCGCATCTACGAATACGTCTCTGCCTGTAACCCCGACATGCCAC
CCATTCCAGCCCTCGCCCATCCTCCCGAACTTCATGCTTCGGGCCCGACC
CGCGTCATTGCCTTCGACCTCTCGGCCCACATGGGCGTCGACTACGAGGC
CACGTCGCCCAACCTGCTGGCGGCGTACGTCCGGGTATTGCGGGGGGAGT
CCATTGAGACCCAAGCGTGCGCCACGTCTCAGGCATTTTACGTGATCCGT
GGCCAGGGCAAGAGCACAAGCACCGAACACAGCCTCCAAGTCACCTACAA
GGAGGGAGACC
back to top

protein sequence of rna10037

>rna10037-protein ID=rna10037-protein|Name=rna10037|organism=Nannochloropsis gaditana|type=polypeptide|length=93bp
MAGRLVCDPARVVALPPQRLGGGCLGAPHAGRWPLHPHALPRHPLFQSQQ
MASNRVSLRRGGKNKKKEGLSNTDFALRHNDGSTNEREGRDLH
back to top

mRNA from alignment at KK037260.1:66634..67400+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10037 ID=rna10037|Name=rna10037|organism=Nannochloropsis gaditana|type=mRNA|length=767bp|location=Sequence derived from alignment at KK037260.1:66634..67400+ (Nannochloropsis gaditana)
ATGGCTGGGTGAAGGACCCCATCCGTCTCGACTGGGCTACAGGtacggaa
ggagggcgggagggagggagggggggaggaagggatgaaaaggaagacag
aTACAAGTTCCGGCATGGGAGAGTGTGGTGACGCTATCAAGGGGGACGGT
GTGGCTTTACTGGGGAGGTCCTGAAGACACTCGCTGGGCGGCTCTCCCTC
ACAAGAACAACCTGTCTATGCTCGTCCTCTCAACGTCCCTCTCCCAtgat
ccctccccccgccttcaccttttccctcctccaggaggcTCGTTTGTGAC
CCCGCCAGGGTGGTGGCACTCCCACCACAAcgactcggaggaggatgcct
gGGTGCTCCCCATGCAGGACGCTGGCCTTTACACCCACATGTAggcgcct
ctccttcccccttttcctccctccctcccgccctccctcccaccctccag
TCTTGCGTtcaccctttcctttcttgtgcTTCCCCTTTGAGGTGGAAACC
CATCCTGGAgtgtccctctcccctctcttttggAGTCTGTCATTAATGCC
TcggccaccctccctttctcccgcgctccctcctctccattcgTCGCAGG
CGCTCCCTCGACATCCGCTTTTCCAAAGCCAACAAATGGCCTCGAATCGA
GTGAGCTTGcgtcgagggggaaaaaataaaaagaaggaaggcctCTCTAA
CACTGATTTCGCGCTCAGGCATAATGACGGAAGTACaaatgagagggaag
ggagggacttACACTGA
back to top

Coding sequence (CDS) from alignment at KK037260.1:66634..67400+

>rna10037 ID=rna10037|Name=rna10037|organism=Nannochloropsis gaditana|type=CDS|length=846bp|location=Sequence derived from alignment at KK037260.1:66634..67400+ (Nannochloropsis gaditana)
ATGGCTGGgaggcTCGTTTGTGACCCCGCCAGGGTGGTGGCACTCCCACC
ACAAcgactcggaggaggatgcctgGGTGCTCCCCATGCAGGACGCTGGC
CTTTACACCCACATGCGCTCCCTCGACATCCGCTTTTCCAAAGCCAACAA
ATGGCCTCGAATCGAGTGAGCTTGcgtcgagggggaaaaaataaaaagaa
ggaaggcctCTCTAACACTGATTTCGCGCTCAGGCATAATGACGGAAGTA
CaaatgagagggaagggagggacttACACTGAATGGCTGGgaggcTCGTT
TGTGACCCCGCCAGGGTGGTGGCACTCCCACCACAAcgactcggaggagg
atgcctgGGTGCTCCCCATGCAGGACGCTGGCCTTTACACCCACATGCGC
TCCCTCGACATCCGCTTTTCCAAAGCCAACAAATGGCCTCGAATCGAGTG
AGCTTGcgtcgagggggaaaaaataaaaagaaggaaggcctCTCTAACAC
TGATTTCGCGCTCAGGCATAATGACGGAAGTACaaatgagagggaaggga
gggacttACACTGAATGGCTGGgaggcTCGTTTGTGACCCCGCCAGGGTG
GTGGCACTCCCACCACAAcgactcggaggaggatgcctgGGTGCTCCCCA
TGCAGGACGCTGGCCTTTACACCCACATGCGCTCCCTCGACATCCGCTTT
TCCAAAGCCAACAAATGGCCTCGAATCGAGTGAGCTTGcgtcgaggggga
aaaaataaaaagaaggaaggcctCTCTAACACTGATTTCGCGCTCAGGCA
TAATGACGGAAGTACaaatgagagggaagggagggacttACACTGA
back to top
Synonyms
Publications