rna10034, rna10034 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10034
Unique Name	rna10034
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	857
Alignment location	KK037260.1:60534..63363 +

Link to JBrowse

Properties


Property Name	Value
Product	atp-binding cassette sub-family g member 2
Orig transcript id	gnl\|cribi\|Naga_100766g3.3158.mrna
Orig protein id	gnl\|cribi\|Naga_100766g3.3158
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037260.1	supercontig	KK037260.1:60534..63363 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100766g3	gene9736	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10034	rna10034-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20670.1	cds10003	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037260.1:60534..63363+
coding sequence from alignment at KK037260.1:60534..63363+

mRNA sequence

>rna10034 ID=rna10034|Name=rna10034|organism=Nannochloropsis gaditana|type=mRNA|length=857bp
GCATGGATACATACGTGTAGGAGCACAGCGATTCCGTCATGGCAGTGTGG
AGGTTGCCAACGGTAACTGAGTGCCCTCCCACCTCCTCCCCCCAGGACAA
TTTCCTCATGGACGAGCAGCGGGGGCTGGGGGAGCGTCTCCCCTTGATCA
AAACCCAGCGTTTGTCCCCCGCTTCCTCTTCCTCCTCCACCTCCTCCTCC
TCCTCCCTTCCCGCCCCCACGACCGCCTTCGGCTCCCGTGCCGCCCACGG
GAGACACCACCACGCCTCCCATCCAGCCACGCTCTCCTCTTCCTCCTCCT
CCTCCCTCGCCGTGCAGCAACGTCACCGACGCCCGTCGACCCCCGGGACC
ACGAATTTCGACGACAACATAGTCCCGGAAGGGGGTTGCCTGGAGGGGGG
AGAAGGGACGACGGGGGGGCTAACAGGGGGGGCAGGAGGTTTGGGGGGAG
GAGGAGGAGGAGAAGCGACAGCTCCCTCACTCATACCGCCCTTGCAACAA
AAGAGGGCGAGAGTGGATTAAGTAGGTGGAAAGCGGGGCCAAATACGTGT
AGATTACGTAAAGATAGTCAAAGAGAGGTTACGAGCACGCATTGCATGTA
TAGTCACGCGCCTCGGGAGGAGCGAGGAAAGGACTGCCAGGAATGGCACT
CAAATTAGACATTGTGCCAAGAGGAGACACACAAAAGAAATGTTACATCC
CATTCATCAAATTTAGTCAGCGGTCTTGTAAGAAGCGTGACAGGAGGCTT
TACTTTCGAAAGTGCAAAGGTATACTTCCGTCAGGAGACATTGTCAGCAT
ATCATCTTTAAAATTTACCCGTTTTATGTCAAGGGCAAAGGTCAATGTAT
GAAAACG

protein sequence of rna10034

>rna10034-protein ID=rna10034-protein|Name=rna10034|organism=Nannochloropsis gaditana|type=polypeptide|length=224bp
MVAYMIIFSAITSLELFIQERSLFVHEKTSGFYRTSAYFIAKILCEILPT
RLVPTIFFALITAFMAGLRTDFYHLFMYWLTLAVTSITSTSLCLLVSCAT
SVYSAAFLGCGAVYLLFMLASGFVLQADQIPNYLAPFKYLSFYRYCLQNL
LSLDLKGRVFDCYTPEQLAVSGKVAICLPTGDLYLESQGINPDHLWMNIG
ILAAMIPVYLGIAYLFLRSLKKKS

mRNA from alignment at KK037260.1:60534..63363+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10034 ID=rna10034|Name=rna10034|organism=Nannochloropsis gaditana|type=mRNA|length=2830bp|location=Sequence derived from alignment at KK037260.1:60534..63363+ (Nannochloropsis gaditana)
ggGGCAGGCTCACATCGGCTGCCTCTTCATGGTCGCATACATGATCATTT
TTTCAGCCATCACCTCCCTGGAGCTCTTCATTCAGGtaaaaagggaagaa
gcaaggaagtgatagagggagggagggagggagggagggagggagggaga
aaggacaggaGAGGGCTTCGTCGGGGACTCCTCTCTCACATGGCTGGCTC
CCAAGCGCCCCTATGGCCTGCGCCCTCAAACCTTGGCGCGGAcgtcgtcc
ttcccttcgccgccgcccttcccccccctccccctacctcAAGTACTCAC
TCTGTGTCCTGTCCTGCGTacctgtctttttcctccctttcaggAACGCT
CTCTCTTCGTGCACGAGAAAACCAGCGGTTTCTACCGGACAAGCGCCTAT
TTCATCGCCAAGGTGGGTCCTcgctccgtctttcccttctaCGTCCCctg
ccattcctccttcctcttcctgtcttgcgggcccctccctctagAGAAAT
GCCCCTTTTGGCCGCGCTCTCGGACTCGGATCTTTCTGTCTCGCGCGTTT
CCTTGTCgaccccctttcttttccttccctttgaccCTGCTTCTCTTACT
ACGTACTCCCCTTGTCgactctctttcttccctttccttttccttttcct
ttgacCCTGTTCCTCTTACTACGAACTTTCCTTGTCGATTTTCCCTCTGC
CGTTTCTcgtgtcctcttccctttttaCTCGCTTTACCTTGTGGAttctc
ttcccgcccttcttcttgcctttCCCTGTATGTCTCCCGCCAGCCCACCA
CggttcttccttctctcacccctctcgcttccctccctgcccccggtCCC
ATGcgttctcccctcctttccttcacctCTCCCAGATCCTATGTGAAATC
CTCCCCACGCGGCTGGTGCCAACAATCTTCTTCGCGCTCATCACCGCCTT
CatgggtaggagggaagggcaggaacaAGGGCCGAGAAactgggaggaag
agttgACGCGGTGGTGTGTGAGAGCAGAGACGACGCGTTCGCACACGAGC
TCTTGCATTTCCATTTttgactcctcccctcctcacacACTCAGCGGGTT
TGCGGACAGACTTCTATCACCTGTTCATGTATTGGCTCACCCTGGCAGGT
GCGTGTCTAgatgaaaaaaggaagaaggggggagagagggagggagggaa
agagataGGGAGGATGGAACCGACCATGCCTCTGGATCAACGGCTtacat
cccccttcccgctctctcccccccaagTCACGAgcatcacctccacctcc
ctctgcctcctcgtctcttGTGCCACCAGCGTCTATTCAGCCGCCTTCCT
CGGGTGCGGCGCTGTCTATCTCCTCTTCATGCTCGCCTCGGGATTCGTTC
TTCAAGCAGGTAAGTGGAGAATATcaccttctctttctcgcgTCCTACTc
tccctcaacccctcctccctccctccctccctccctccctccctctctcc
ctctctccctttcttccttcctccctccctctctccctctctccctttct
ccctccctccctctttcctgcccaCCCAAccccgctcccgcccccgccca
gaCCAAATTCCCAACTACCTAGCTCCCTTCAAGTACTTGTCCTTCTACCG
GTACTGTCTGCAGAACCTGCTCTCTTTGGATCTGAAAGGGCGTGTCTTCG
ATTGCTATACGCCGGAGCAGCTTGCGGTGTCTGGCAAGGtaatggaaaag
gaaaaagatcCGGGGGATGGAGCGCAAGGAacggggacggggcggaagag
aagaTCCCTGTCTTCAGGGGAGCGCATTCCTTAGGCCgtgaggatgaaga
ggtgaCGATGGACGTGCCTGCgtggaaggagcaggagcgtgTCCCTCGGC
CCATGTGGCGAGCATCTCCCAACACCACGCAGAGGCAACCCCCTGACACG
CCGTTGACCATGCCctctcttgctccctccctccttgcctccctcttttc
cttcctccaggtgGCCATTTGTCTGCCTACCGGCGATCTCTACCTTGAAT
CCCAAGGCATCAATCCGGACCACCTATGGATGAACATTGGGATCCTGGCC
GCCATGATTCCTGTTTATTTGGGCATTGcctatctcttcctccggtCTCT
GAAGAAGAAGTCTTAGActgtgggaaaaggagaggatggaaagcggAATT
GTGCGCAGCCGGTAGATGAGTTCCGGGATTTAAGATGTCATTTTTCGAGA
CAAAGTAAGCGGGCACCATGTGAGGAAAGGCTATGGAAGGTGATGCTTCT
CTCTTGGTCGCGTGCGGGGCGCGTGCTCGTACTGGCAGCTTCTATGTGGC
CGTGCAAAGAGAAATTGACAGAAATGGGATGTGTGGCTGCAGTAACACTT
TGAGACTTCGTTTTAAAGGGAATCTTTGGGTAAAAGGAAGGTTGTATTGC
AGTCGATTCTTAGTTTGAAAAGTACAAGATGTGCCCTTAAAGTTGGCGCC
AGTAGATTAGACTTGCTGGATTTCAACAGATTGAGATTCTTCGTCCTTGC
CGCAGCTTACGGGAAGTGGGATCGGATGAAAAGGAGCATGTCGAATATGC
ACAATAACACGGGAGATCAAGTTGAATAGAGTTGACTAGGTTAAGGGTTA
CTTGCCATTCAAGGGCTTACATATTATGACGTCAGAGGAACGTGGTAGGG
TTTGTATCCTCGGATAAGTCTTCGAAAAATAAGTAAAATGTCTTCATAAT
GAAGCAGAGAGagacgaggaaaagcaaTATGAGACATGAGTTATGCATGC
CAGCATGCCTCCTTGACGAGTTCGCTTCCT

Coding sequence (CDS) from alignment at KK037260.1:60534..63363+

>rna10034 ID=rna10034|Name=rna10034|organism=Nannochloropsis gaditana|type=CDS|length=4725bp|location=Sequence derived from alignment at KK037260.1:60534..63363+ (Nannochloropsis gaditana)
ATGGTCGCATACATGATCATTTTTTCAGCCATCACCTCCCTGGAGCTCTT
CATTCAGgAACGCTCTCTCTTCGTGCACGAGAAAACCAGCGGTTTCTACC
GGACAAGCGCCTATTTCATCGCCAAGATCCTATGTGAAATCCTCCCCACG
CGGCTGGTGCCAACAATCTTCTTCGCGCTCATCACCGCCTTCatggCGGG
TTTGCGGACAGACTTCTATCACCTGTTCATGTATTGGCTCACCCTGGCAG
TCACGAgcatcacctccacctccctctgcctcctcgtctcttGTGCCACC
AGCGTCTATTCAGCCGCCTTCCTCGGGTGCGGCGCTGTCTATCTCCTCTT
CATGCTCGCCTCGGGATTCGTTCTTCAAGCAGaCCAAATTCCCAACTACC
TAGCTCCCTTCAAGTACTTGTCCTTCTACCGGTACTGTCTGCAGAACCTG
CTCTCTTTGGATCTGAAAGGGCGTGTCTTCGATTGCTATACGCCGGAGCA
GCTTGCGGTGTCTGGCAAGgtgGCCATTTGTCTGCCTACCGGCGATCTCT
ACCTTGAATCCCAAGGCATCAATCCGGACCACCTATGGATGAACATTGGG
ATCCTGGCCGCCATGATTCCTGTTTATTTGGGCATTGcctatctcttcct
ccggtCTCTGAAGAAGAAGTCTTAGATGGTCGCATACATGATCATTTTTT
CAGCCATCACCTCCCTGGAGCTCTTCATTCAGgAACGCTCTCTCTTCGTG
CACGAGAAAACCAGCGGTTTCTACCGGACAAGCGCCTATTTCATCGCCAA
GATCCTATGTGAAATCCTCCCCACGCGGCTGGTGCCAACAATCTTCTTCG
CGCTCATCACCGCCTTCatggCGGGTTTGCGGACAGACTTCTATCACCTG
TTCATGTATTGGCTCACCCTGGCAGTCACGAgcatcacctccacctccct
ctgcctcctcgtctcttGTGCCACCAGCGTCTATTCAGCCGCCTTCCTCG
GGTGCGGCGCTGTCTATCTCCTCTTCATGCTCGCCTCGGGATTCGTTCTT
CAAGCAGaCCAAATTCCCAACTACCTAGCTCCCTTCAAGTACTTGTCCTT
CTACCGGTACTGTCTGCAGAACCTGCTCTCTTTGGATCTGAAAGGGCGTG
TCTTCGATTGCTATACGCCGGAGCAGCTTGCGGTGTCTGGCAAGgtgGCC
ATTTGTCTGCCTACCGGCGATCTCTACCTTGAATCCCAAGGCATCAATCC
GGACCACCTATGGATGAACATTGGGATCCTGGCCGCCATGATTCCTGTTT
ATTTGGGCATTGcctatctcttcctccggtCTCTGAAGAAGAAGTCTTAG
ATGGTCGCATACATGATCATTTTTTCAGCCATCACCTCCCTGGAGCTCTT
CATTCAGgAACGCTCTCTCTTCGTGCACGAGAAAACCAGCGGTTTCTACC
GGACAAGCGCCTATTTCATCGCCAAGATCCTATGTGAAATCCTCCCCACG
CGGCTGGTGCCAACAATCTTCTTCGCGCTCATCACCGCCTTCatggCGGG
TTTGCGGACAGACTTCTATCACCTGTTCATGTATTGGCTCACCCTGGCAG
TCACGAgcatcacctccacctccctctgcctcctcgtctcttGTGCCACC
AGCGTCTATTCAGCCGCCTTCCTCGGGTGCGGCGCTGTCTATCTCCTCTT
CATGCTCGCCTCGGGATTCGTTCTTCAAGCAGaCCAAATTCCCAACTACC
TAGCTCCCTTCAAGTACTTGTCCTTCTACCGGTACTGTCTGCAGAACCTG
CTCTCTTTGGATCTGAAAGGGCGTGTCTTCGATTGCTATACGCCGGAGCA
GCTTGCGGTGTCTGGCAAGgtgGCCATTTGTCTGCCTACCGGCGATCTCT
ACCTTGAATCCCAAGGCATCAATCCGGACCACCTATGGATGAACATTGGG
ATCCTGGCCGCCATGATTCCTGTTTATTTGGGCATTGcctatctcttcct
ccggtCTCTGAAGAAGAAGTCTTAGATGGTCGCATACATGATCATTTTTT
CAGCCATCACCTCCCTGGAGCTCTTCATTCAGgAACGCTCTCTCTTCGTG
CACGAGAAAACCAGCGGTTTCTACCGGACAAGCGCCTATTTCATCGCCAA
GATCCTATGTGAAATCCTCCCCACGCGGCTGGTGCCAACAATCTTCTTCG
CGCTCATCACCGCCTTCatggCGGGTTTGCGGACAGACTTCTATCACCTG
TTCATGTATTGGCTCACCCTGGCAGTCACGAgcatcacctccacctccct
ctgcctcctcgtctcttGTGCCACCAGCGTCTATTCAGCCGCCTTCCTCG
GGTGCGGCGCTGTCTATCTCCTCTTCATGCTCGCCTCGGGATTCGTTCTT
CAAGCAGaCCAAATTCCCAACTACCTAGCTCCCTTCAAGTACTTGTCCTT
CTACCGGTACTGTCTGCAGAACCTGCTCTCTTTGGATCTGAAAGGGCGTG
TCTTCGATTGCTATACGCCGGAGCAGCTTGCGGTGTCTGGCAAGgtgGCC
ATTTGTCTGCCTACCGGCGATCTCTACCTTGAATCCCAAGGCATCAATCC
GGACCACCTATGGATGAACATTGGGATCCTGGCCGCCATGATTCCTGTTT
ATTTGGGCATTGcctatctcttcctccggtCTCTGAAGAAGAAGTCTTAG
ATGGTCGCATACATGATCATTTTTTCAGCCATCACCTCCCTGGAGCTCTT
CATTCAGgAACGCTCTCTCTTCGTGCACGAGAAAACCAGCGGTTTCTACC
GGACAAGCGCCTATTTCATCGCCAAGATCCTATGTGAAATCCTCCCCACG
CGGCTGGTGCCAACAATCTTCTTCGCGCTCATCACCGCCTTCatggCGGG
TTTGCGGACAGACTTCTATCACCTGTTCATGTATTGGCTCACCCTGGCAG
TCACGAgcatcacctccacctccctctgcctcctcgtctcttGTGCCACC
AGCGTCTATTCAGCCGCCTTCCTCGGGTGCGGCGCTGTCTATCTCCTCTT
CATGCTCGCCTCGGGATTCGTTCTTCAAGCAGaCCAAATTCCCAACTACC
TAGCTCCCTTCAAGTACTTGTCCTTCTACCGGTACTGTCTGCAGAACCTG
CTCTCTTTGGATCTGAAAGGGCGTGTCTTCGATTGCTATACGCCGGAGCA
GCTTGCGGTGTCTGGCAAGgtgGCCATTTGTCTGCCTACCGGCGATCTCT
ACCTTGAATCCCAAGGCATCAATCCGGACCACCTATGGATGAACATTGGG
ATCCTGGCCGCCATGATTCCTGTTTATTTGGGCATTGcctatctcttcct
ccggtCTCTGAAGAAGAAGTCTTAGATGGTCGCATACATGATCATTTTTT
CAGCCATCACCTCCCTGGAGCTCTTCATTCAGgAACGCTCTCTCTTCGTG
CACGAGAAAACCAGCGGTTTCTACCGGACAAGCGCCTATTTCATCGCCAA
GATCCTATGTGAAATCCTCCCCACGCGGCTGGTGCCAACAATCTTCTTCG
CGCTCATCACCGCCTTCatggCGGGTTTGCGGACAGACTTCTATCACCTG
TTCATGTATTGGCTCACCCTGGCAGTCACGAgcatcacctccacctccct
ctgcctcctcgtctcttGTGCCACCAGCGTCTATTCAGCCGCCTTCCTCG
GGTGCGGCGCTGTCTATCTCCTCTTCATGCTCGCCTCGGGATTCGTTCTT
CAAGCAGaCCAAATTCCCAACTACCTAGCTCCCTTCAAGTACTTGTCCTT
CTACCGGTACTGTCTGCAGAACCTGCTCTCTTTGGATCTGAAAGGGCGTG
TCTTCGATTGCTATACGCCGGAGCAGCTTGCGGTGTCTGGCAAGgtgGCC
ATTTGTCTGCCTACCGGCGATCTCTACCTTGAATCCCAAGGCATCAATCC
GGACCACCTATGGATGAACATTGGGATCCTGGCCGCCATGATTCCTGTTT
ATTTGGGCATTGcctatctcttcctccggtCTCTGAAGAAGAAGTCTTAG
ATGGTCGCATACATGATCATTTTTTCAGCCATCACCTCCCTGGAGCTCTT
CATTCAGgAACGCTCTCTCTTCGTGCACGAGAAAACCAGCGGTTTCTACC
GGACAAGCGCCTATTTCATCGCCAAGATCCTATGTGAAATCCTCCCCACG
CGGCTGGTGCCAACAATCTTCTTCGCGCTCATCACCGCCTTCatggCGGG
TTTGCGGACAGACTTCTATCACCTGTTCATGTATTGGCTCACCCTGGCAG
TCACGAgcatcacctccacctccctctgcctcctcgtctcttGTGCCACC
AGCGTCTATTCAGCCGCCTTCCTCGGGTGCGGCGCTGTCTATCTCCTCTT
CATGCTCGCCTCGGGATTCGTTCTTCAAGCAGaCCAAATTCCCAACTACC
TAGCTCCCTTCAAGTACTTGTCCTTCTACCGGTACTGTCTGCAGAACCTG
CTCTCTTTGGATCTGAAAGGGCGTGTCTTCGATTGCTATACGCCGGAGCA
GCTTGCGGTGTCTGGCAAGgtgGCCATTTGTCTGCCTACCGGCGATCTCT
ACCTTGAATCCCAAGGCATCAATCCGGACCACCTATGGATGAACATTGGG
ATCCTGGCCGCCATGATTCCTGTTTATTTGGGCATTGcctatctcttcct
ccggtCTCTGAAGAAGAAGTCTTAG

Synonyms

Publications