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Properties
| Property Name | Value |
|---|
| Product | Protein of unknown function DUF3661, vaculolar transmembrane |
| Orig transcript id | gnl|cribi|Naga_100420g1.1549.mrna |
| Orig protein id | gnl|cribi|Naga_100420g1.1549 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037260.1 | supercontig | KK037260.1:54641..56273 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna10032 ID=rna10032|Name=rna10032|organism=Nannochloropsis gaditana|type=mRNA|length=2700bp
GCCCCTGGCCACCAAGGGTCGAATCACATACTTATTAAGTGCAGGGGCAA
GGGCGAAGGCAACGCCAGCACGCAGGGGGAGCGCGACACGAGCAAAGGTG
AGGAAGCCTGCAGAAAAAGCTGCTACCTGATTTGTCGTATGAAAGGGGAG
GACGCGGATGGAGGGCGAGCACGGGGTCAGAGAAGGCCGCAATTCTCCGC
GCGCTCGCACAGAAAACCCTGCAGCCACGATAGGACGAGGGATGCAAATG
GAACGCAACCGTCACGGAAGCCATTTGGGATCATTGTCCTCTCCTGTAAT
GGATGTCTCACCTTTGCTTGCCCGTCACTCGTGCTCAAATCCAGCCACTC
CCCCGTGCTTTGATGGAAGGCGACGATCCCTACTGGCAAGGAGATAAACC
AGAACAACACCTCAGACGCAATGTAGGACGCAACACCTGCCAGCCCAAAA
TCTTGCAGTCGCTCGCGGAGGGACCGTGGGTCCGCGTCGTTCTCCTCTGG
CTGGTAGCCAAGGCGAACGAGGAGGGAGGTGATGGCGTTGGAAGGAGTGG
AATCCTCCCGCGGCGTCGCAAAAGTGCGGAAATCGAACAAAATGTGTCGT
CTTCTTGAGATGCTGGTGCTGCAGCGTGTGCTTGAGGGGAGCGGGAGGCT
ATCGAGCGTGAGAGAGGATAGTGGCCGGGAGGACGTGGAGGAAGGGACAC
GAGAGGGCGAGGAGGTAGAGAAGCGTAGCGGGAGAAGGAAGGCTCGTGTG
CATGAGATGAAGAAGAAAAATATCAGGAAGATGCTTGAAAGGCCCTTGTG
GACTGTTCGGTCCATCACAAAGGGGATTTGACGCCTCTCAGTAAGGATGA
GTCTCAGTCAGGAGGGCTGTTTGAGCGGTGCACCGCCAGTGGCAGAACGA
AAGGACCCTCCCCGCCCGAGCCGGAACCTAAATGTGGATGTTGCAAGGAT
TAATTTGAAAAGAGAAGGTGTGTAATGAGCGCGAGGGCAGGACAGAGATG
GTGACACATGAAAGTGGTAGATGTAGAACAACAAGGAGTATCAGGATCGT
GCAGTCAAACCGCCTTCAAACGAAAGAAAGCCAAAAATCCCAAAGGCCAT
GGCTGACAGTCTGCATGTACATTCTCTCACTGAATGAAGCAGACGTATTT
CCAGAAAGGCGATGCACTGTCATGCTTGAAATTTATCGTCACACCAAAAG
GGCCATAGGCTCTCGAACAACCTCCTGCCCCTCATCTTAACGGTCCTGCG
ACTACACCAACACGGAGCAGAAAAAAGGGCTGAAACTACGTTAACTCTAT
CCATTGGCACAAAGACACCCAAACAAAACCTCCGACATGATTGTCTTGGA
CTCTAGAGGTGGAGCACCAGCCCTTTCGTGATTTTACAAGAGCGTCGTTC
ATCCGCATAGACACGGTCCTGCTGACCCGTGCGATACTGGCTTGTACCCA
CTCACATGCAAGCGACACCGCAGCCTCTACCGTGGGCTTTCAATCGCTGG
CCATCATATTTAAGTGGTCTTACGGTCTCGCGCTCAGCTTGCCATCTCTT
TTCTGCTCACGCTTTCCCCTTATCCATCCCAGTAGCCTAGACATGCGCTT
CCCCTCAACAGCTACAAGCACCTCCTTCCTCCTCCTCGCTGCTATAGGCT
GGCTGACCCTCACCTCTTCAGGACGTGCTACTCTCACATACATATGGGAA
GGCGACAGAGACAAGGCGAGGAAAAGAGTAGCCCTCCGACAGCTCAAGTT
TTTGAGGGCAGAGTTGACCTCGTTGGCAGATCGGATCGAACGGGCGCGGG
AGCGCACGAACAAGGCACTGAGGAAGGAGGAGGAGGGCAGAGATGAAGAG
GAGGAGGAGGGGGGGAGAAGAGAGGGAGAGAAGGAGGAGGGGGAGAGCGC
AGCGTCCACCAGCGCGTATTATCACTTCAGTTCGTCGGGGAGGAAATTCA
AGAACAAGTGGGATGAGTACGACGTTGAGAGGGAATTAGAAAGGCTGGAA
CAAGAGGAAAAGAGGGAAGGGAACGGGGAAGAGAAGCTGGGAGGCGGAGA
GGGGAGAGAAGGAAGCGAAGAGGAGGAAGGAGGAGAGGCGAACGGCCAAA
TAGGGCGCGAGGGGAGGAGCGTGGAAGGAAGGAGGGAAGGAAGGAAGGAG
GGAGGGAGGGAGGGGGAGAGGGAGGGAGGGAAAGAAAAGAAGAGGCCGAC
GCTAGGACAGGTGAGGACGGAAGTGGGTGAATTACAGAGCGATTTGGAGA
AGGCGATGGGGCACCTGGACAGTGTCCGGGGGGACGAGGAGGTGAGGCGG
AGGCGGAAGGCCTTAGTGCTGCGGAGCCATGAGCTCTTTACAGACTTGGA
TGAGGTGACCCAGCGATTGCTATGAGCCCTTTTGTGCAAGAAAGGTCTGA
GCGTGCATCTTTACCCGACAAGCAGGCGTTCAGGCTCCGCGTAGTGTGTC
CGTGGGATCACGGGAATCGCTCCTGAGAGCCCAAGGGCTAGGGTTAGGGT
CTGGTGTAGGGTTAGGGTTAGGGTTAGAGTTAGGGTTGGATAAGGGTTTG
CAGGCACTCTCTCAGGTTGCTGGAGGGGTCTCCTTTCCCCCTCCCTGCGT
GCACAGGGCGGGTTGTTGGCGTGTTTAAAAGGACCGCGTCAAAAGACATT
AAAAAAAGTGTAACGGTTAGGGTTGCGTTCTCCATAGACAAGGTCACACG back to topprotein sequence of rna10032 >rna10032-protein ID=rna10032-protein|Name=rna10032|organism=Nannochloropsis gaditana|type=polypeptide|length=273bp
MGLEGREADRLAANGSDPMEDVVVAHCTLVTGEFDMFIQFLLACLSLGVL
VVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGSDEC
AMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSS
SLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFA
TKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQ
FYIQVGREGGREGGREGGREGGR back to topmRNA from alignment at KK037260.1:54641..56273+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna10032 ID=rna10032|Name=rna10032|organism=Nannochloropsis gaditana|type=mRNA|length=1633bp|location=Sequence derived from alignment at KK037260.1:54641..56273+ (Nannochloropsis gaditana)
TTGTCTCCCCTGGGCCTCAGGCGACCCTAGCGGCACGCCAAAAAGGACAG
CGATAGAAACATGACTAAGTGCCTTTTGCCTCTCTTTCAACTAAGAACGT
GTCTTTCACACCCACCACACAAGTAGACCAGGAGCAGGGATTGATGAGTG
TCCGCTACGGGGTGAGATTCCACATGGATCATCGACAAAAAGGGTTCAAG
ATCGATTTAGCAGCGTGCCAGTAAACAGGAGTAGTTACATTCGTCACTTC
GAACGCAACGACATTGAGCTCCACGTGCACCATCACCGAGGTTGACGTGC
CTGAAGATAGACAtggggctggaagggcgCGAGGCAGACAGGTTGGCCGC
AAATGGCAGCGACCCCATGGAGGACGTTGTCGTTGCACATTGCACGGTAC
GAAAGTTCTTAAAGTCATGATTTACAGAAGGGCCCAGTTCCCCCCAGGCA
ACCTATCTCACTTCATGcacttcatttttttctcttaTGAATGAATACGT
GGACGCGGTGCGAAGTTGGTAACTGGGGAATTCGACATGTTCATAGTAAG
TCCGTATAGCCTTAGCTCTCGCGTGTCTGTCCTTCGTACCAGTCGATCCG
CCTGGACCTACTTGTCATACTATCCAAATTTTCGACCCCAGACTCCACAT
ATTTTTATCATGTTCTCATGCTATCCTTTTCTGTGTCTTTTCGCACAACT
GACTTTTTTTCTGGTTCGTcaattttccctctccccccccctcggtaaac
tcctccttgccgccaCAGcaattcctccttgcctgcctctcGCTCGGCGT
TTTGGTGGTAAAACGCTACCGAGAGCACCCTCCTCGGCCCTTCATGGTGT
GGGTGCTTGACAGCAGCAAGCAGTGTGTCGGGGCCGGCGTGGCCCATATC
GCGAACCTGATCATCGCCATTTTCCTCGCGCGCTTGGGCGGGTCGGACGa
agtgggtgggagggagaaagggagggagggaaggagaaaaggaacaAGGA
CAAATCTATGAGGTTGATGTATGACGTCCAAAGTGGCACTTGCAGGAAAA
AATAAAGTGgcttgcctttccctccttcccgccctccctcccccctctcc
cctcctcagtGTGCCATGTACTTCCTCAACTTCTTCCTCGACACGACCGT
GGGCGTCTTCAtttcctacctccttcttcaactCCTCCAACGCAccgccc
tcgcctgctcCAAGCCACCGTCcccccgcaccacctcctcccgcccttca
tccacctcttcctccctccctccctcctcctcctccccctcctccccccc
tccctcctgctgcgCCGTCCTCGCGCGCACGGGCTACTACGGcgacgccc
tccgcccctccctctccatttgGCTGGTGCAGCTTCTTTCGTGGCTCGTC
ATCATTTTCGCCACCAAGTTTCTGGTCTTTGCCTTGATCTACCTGGCCTG
GGCCCCCCTCAATACCCTGGCACTCGGCCTATTCATGCCCTTCAAAAAGC
ATAGGAGGGTGGAGCTCGTCCTGGTCATGATCGTGGGGCCCTTGATTCTG
AACGCGGTCCAGTTCTACAtccaggtggggagggagggagggagggaggg
agggagggagggagggagggagggagggaggga back to topCoding sequence (CDS) from alignment at KK037260.1:54641..56273+ >rna10032 ID=rna10032|Name=rna10032|organism=Nannochloropsis gaditana|type=CDS|length=3284bp|location=Sequence derived from alignment at KK037260.1:54641..56273+ (Nannochloropsis gaditana)
AtggggctggaagggcgCGAGGCAGACAGGTTGGCCGCAAATGGCAGCGA
CCCCATGGAGGACGTTGTCGTTGCACATTGCACGTTGGTAACTGGGGAAT
TCGACATGTTCATAcaattcctccttgcctgcctctcGCTCGGCGTTTTG
GTGGTAAAACGCTACCGAGAGCACCCTCCTCGGCCCTTCATGGTGTGGGT
GCTTGACAGCAGCAAGCAGTGTGTCGGGGCCGGCGTGGCCCATATCGCGA
ACCTGATCATCGCCATTTTCCTCGCGCGCTTGGGCGGGTCGGACGaatGT
GCCATGTACTTCCTCAACTTCTTCCTCGACACGACCGTGGGCGTCTTCAt
ttcctacctccttcttcaactCCTCCAACGCAccgccctcgcctgctcCA
AGCCACCGTCcccccgcaccacctcctcccgcccttcatccacctcttcc
tccctccctccctcctcctcctccccctcctccccccctccctcctgctg
cgCCGTCCTCGCGCGCACGGGCTACTACGGcgacgccctccgcccctccc
tctccatttgGCTGGTGCAGCTTCTTTCGTGGCTCGTCATCATTTTCGCC
ACCAAGTTTCTGGTCTTTGCCTTGATCTACCTGGCCTGGGCCCCCCTCAA
TACCCTGGCACTCGGCCTATTCATGCCCTTCAAAAAGCATAGGAGGGTGG
AGCTCGTCCTGGTCATGATCGTGGGGCCCTTGATTCTGAACGCGGTCCAG
TTCTACAtccaggtggggagggagggagggagggagggagggagggaggg
agggagggagggagggagggaAtggggctggaagggcgCGAGGCAGACAG
GTTGGCCGCAAATGGCAGCGACCCCATGGAGGACGTTGTCGTTGCACATT
GCACGTTGGTAACTGGGGAATTCGACATGTTCATAcaattcctccttgcc
tgcctctcGCTCGGCGTTTTGGTGGTAAAACGCTACCGAGAGCACCCTCC
TCGGCCCTTCATGGTGTGGGTGCTTGACAGCAGCAAGCAGTGTGTCGGGG
CCGGCGTGGCCCATATCGCGAACCTGATCATCGCCATTTTCCTCGCGCGC
TTGGGCGGGTCGGACGaatGTGCCATGTACTTCCTCAACTTCTTCCTCGA
CACGACCGTGGGCGTCTTCAtttcctacctccttcttcaactCCTCCAAC
GCAccgccctcgcctgctcCAAGCCACCGTCcccccgcaccacctcctcc
cgcccttcatccacctcttcctccctccctccctcctcctcctccccctc
ctccccccctccctcctgctgcgCCGTCCTCGCGCGCACGGGCTACTACG
GcgacgccctccgcccctccctctccatttgGCTGGTGCAGCTTCTTTCG
TGGCTCGTCATCATTTTCGCCACCAAGTTTCTGGTCTTTGCCTTGATCTA
CCTGGCCTGGGCCCCCCTCAATACCCTGGCACTCGGCCTATTCATGCCCT
TCAAAAAGCATAGGAGGGTGGAGCTCGTCCTGGTCATGATCGTGGGGCCC
TTGATTCTGAACGCGGTCCAGTTCTACAtccaggtggggagggagggagg
gagggagggagggagggagggagggagggagggagggagggaAtggggct
ggaagggcgCGAGGCAGACAGGTTGGCCGCAAATGGCAGCGACCCCATGG
AGGACGTTGTCGTTGCACATTGCACGTTGGTAACTGGGGAATTCGACATG
TTCATAcaattcctccttgcctgcctctcGCTCGGCGTTTTGGTGGTAAA
ACGCTACCGAGAGCACCCTCCTCGGCCCTTCATGGTGTGGGTGCTTGACA
GCAGCAAGCAGTGTGTCGGGGCCGGCGTGGCCCATATCGCGAACCTGATC
ATCGCCATTTTCCTCGCGCGCTTGGGCGGGTCGGACGaatGTGCCATGTA
CTTCCTCAACTTCTTCCTCGACACGACCGTGGGCGTCTTCAtttcctacc
tccttcttcaactCCTCCAACGCAccgccctcgcctgctcCAAGCCACCG
TCcccccgcaccacctcctcccgcccttcatccacctcttcctccctccc
tccctcctcctcctccccctcctccccccctccctcctgctgcgCCGTCC
TCGCGCGCACGGGCTACTACGGcgacgccctccgcccctccctctccatt
tgGCTGGTGCAGCTTCTTTCGTGGCTCGTCATCATTTTCGCCACCAAGTT
TCTGGTCTTTGCCTTGATCTACCTGGCCTGGGCCCCCCTCAATACCCTGG
CACTCGGCCTATTCATGCCCTTCAAAAAGCATAGGAGGGTGGAGCTCGTC
CTGGTCATGATCGTGGGGCCCTTGATTCTGAACGCGGTCCAGTTCTACAt
ccaggtggggagggagggagggagggagggagggagggagggagggaggg
agggagggagggaAtggggctggaagggcgCGAGGCAGACAGGTTGGCCG
CAAATGGCAGCGACCCCATGGAGGACGTTGTCGTTGCACATTGCACGTTG
GTAACTGGGGAATTCGACATGTTCATAcaattcctccttgcctgcctctc
GCTCGGCGTTTTGGTGGTAAAACGCTACCGAGAGCACCCTCCTCGGCCCT
TCATGGTGTGGGTGCTTGACAGCAGCAAGCAGTGTGTCGGGGCCGGCGTG
GCCCATATCGCGAACCTGATCATCGCCATTTTCCTCGCGCGCTTGGGCGG
GTCGGACGaatGTGCCATGTACTTCCTCAACTTCTTCCTCGACACGACCG
TGGGCGTCTTCAtttcctacctccttcttcaactCCTCCAACGCAccgcc
ctcgcctgctcCAAGCCACCGTCcccccgcaccacctcctcccgcccttc
atccacctcttcctccctccctccctcctcctcctccccctcctcccccc
ctccctcctgctgcgCCGTCCTCGCGCGCACGGGCTACTACGGcgacgcc
ctccgcccctccctctccatttgGCTGGTGCAGCTTCTTTCGTGGCTCGT
CATCATTTTCGCCACCAAGTTTCTGGTCTTTGCCTTGATCTACCTGGCCT
GGGCCCCCCTCAATACCCTGGCACTCGGCCTATTCATGCCCTTCAAAAAG
CATAGGAGGGTGGAGCTCGTCCTGGTCATGATCGTGGGGCCCTTGATTCT
GAACGCGGTCCAGTTCTACAtccaggtggggagggagggagggagggagg
gagggagggagggagggagggagggagggaggga back to top
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