EWM20672.1, cds10001 (CDS) Nannochloropsis gaditana

Overview
NameEWM20672.1
Unique Namecds10001
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037260.1:54953..55036 +
Alignment locationKK037260.1:55156..55185 +
Alignment locationKK037260.1:55409..55591 +
Alignment locationKK037260.1:55750..56273 +

Link to JBrowse

Properties
Property NameValue
End range.
End range56273
Protein idEWM20672.1
ProductProtein of unknown function DUF3661, vaculolar transmembrane
Partialtrue
Orig transcript idgnl|cribi|Naga_100420g1.1549.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:54953..55036 +
KK037260.1supercontigKK037260.1:55156..55185 +
KK037260.1supercontigKK037260.1:55409..55591 +
KK037260.1supercontigKK037260.1:55750..56273 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR022127DUF3661_TM
Homology
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|585100483|gb|EWM20672.1| (Protein of unknown function DUF3661, vaculolar transmembrane, partial [Nannochloropsis gaditana])

HSP 1 Score: 552.747 bits (1423), Expect = 0.000e+0
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0
Query:    1 MGLEGREADRLAANGSDPMEDVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQVGREGGREGGREGGREGGR 273
            MGLEGREADRLAANGSDPMEDVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQVGREGGREGGREGGREGGR
Sbjct:    1 MGLEGREADRLAANGSDPMEDVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQVGREGGREGGREGGREGGR 273          
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|698804794|ref|XP_009835426.1| (hypothetical protein H257_10545 [Aphanomyces astaci] >gi|574109418|gb|ETV74921.1| hypothetical protein H257_10545 [Aphanomyces astaci])

HSP 1 Score: 164.851 bits (416), Expect = 2.244e-46
Identity = 97/248 (39.11%), Postives = 142/248 (57.26%), Query Frame = 0
Query:   11 LAANGSDPMEDVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLG----GSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQ 254
            +A N + P     +  CTL+ G F+  IQ +L  ++L VL+ KRY E P RP  +W+ D+SKQ +GAGVAH ANL IAI L+ L     G+D+CA YF+NF LDTT GV ++YLLL+ L   A+             + + T+  +P                    G YG  ++  + +W +QL++WLVII +TK L+ A+I+    PL  +A  LF PF    +VELV+VM+  P+++N +QF+IQ
Sbjct:    1 MATNSTTP---ATIERCTLLNGTFNNLIQVMLGLIALSVLIFKRYHERPRRPLRIWMFDASKQLIGAGVAHAANLAIAITLSGLAKGQTGADQCAFYFVNFTLDTTFGVAVNYLLLKALVYFAV-------------KYNVTALQVP--------------------GDYGHPIQ--VRVWAIQLVTWLVIICSTKILIGAVIFGLETPLGDVAAWLFSPFGDLPKVELVIVMVACPVLMNGLQFWIQ 210          
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|698804792|ref|XP_009835425.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574109419|gb|ETV74922.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 159.073 bits (401), Expect = 1.683e-44
Identity = 95/247 (38.46%), Postives = 141/247 (57.09%), Query Frame = 0
Query:   11 LAANGSDPMEDVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLG----GSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYI 253
            +A N + P     +  CTL+ G F+  IQ +L  ++L VL+ KRY E P RP  +W+ D+SKQ +GAGVAH ANL IAI L+ L     G+D+CA YF+NF LDTT GV ++YLLL+ L   A+             + + T+  +P                    G YG  ++  + +W +QL++WLVII +TK L+ A+I+    PL  +A  LF PF    +VELV+VM+  P+++N +QF++
Sbjct:    1 MATNSTTP---ATIERCTLLNGTFNNLIQVMLGLIALSVLIFKRYHERPRRPLRIWMFDASKQLIGAGVAHAANLAIAITLSGLAKGQTGADQCAFYFVNFTLDTTFGVAVNYLLLKALVYFAV-------------KYNVTALQVP--------------------GDYGHPIQ--VRVWAIQLVTWLVIICSTKILIGAVIFGLETPLGDVAAWLFSPFGDLPKVELVIVMVACPVLMNGLQFWV 209          
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|673022780|ref|XP_008865351.1| (hypothetical protein H310_03319 [Aphanomyces invadans] >gi|574478579|gb|ETW05574.1| hypothetical protein H310_03319 [Aphanomyces invadans])

HSP 1 Score: 156.762 bits (395), Expect = 2.077e-43
Identity = 91/232 (39.22%), Postives = 129/232 (55.60%), Query Frame = 0
Query:   26 HCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGS----DECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYI 253
            +C L++G F+  +Q  L  + L VLV+KR  E P RPF VW  D+SKQ +GAGVAH ANL IAI L +L  S    DEC+ YF+NF LDT++GV ++++LL                RTT       +++L  + +    P           GYYG+ +R    +WL QLLSW+ I+   K ++   IY   APLN     LF P   + +VEL+ VM+  P ++NA+QF+I
Sbjct:   12 NCKLISGTFETLVQVGLGIVGLSVLVLKRAYEKPQRPFQVWAYDASKQAIGAGVAHAANLFIAIMLVKLSKSDDAKDECSFYFINFTLDTSLGVLLNWVLL----------------RTT------VAAALHFNWTWLQVP-----------GYYGNPIRT--RVWLTQLLSWIAIVLTAKLVIARFIYAFSAPLNDFGNWLFDPLSNYPKVELLFVMVACPCLMNALQFWI 208          
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|813101889|ref|XP_012193648.1| (hypothetical protein SPRG_00150 [Saprolegnia parasitica CBS 223.65] >gi|641541556|gb|KDO35301.1| hypothetical protein SPRG_00150 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 156.377 bits (394), Expect = 3.461e-43
Identity = 97/274 (35.40%), Postives = 134/274 (48.91%), Query Frame = 0
Query:   11 LAANGSDPMEDVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLG----GSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLART---------GYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQVGREGGREGGREGGREG 271
            +AAN +     +V   C L++G F+ FIQ  L  +++ VLV KRY EHP RPF VW+ D+SKQC+GAG AH ANL IAI L +       +DECA YF+NF LDT+ GV +++ LL                                           C  +LAR          G+YG+ ++    +WL+QL  WLVII  TK ++  +I     P+N  A  LF P     R+ELVLVMI  P+ +N VQF++        +   +   E 
Sbjct:    1 MAANTTS----IVANECKLLSGPFETFIQVSLGLIAMSVLVCKRYFEHPQRPFRVWLFDASKQCIGAGWAHAANLTIAILLVQYSTEKENADECAFYFINFTLDTSFGVALNWFLLH------------------------------------------CSVLLARHFHWKALQVPGFYGNPIQT--RVWLIQLGVWLVIIIMTKLIIGRVILWFERPINAFANVLFEPLSDFPRLELVLVMIACPVTMNVVQFWVTDNFLKKHDSDVKAADEN 226          
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|325182680|emb|CCA17135.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 156.762 bits (395), Expect = 7.442e-43
Identity = 85/237 (35.86%), Postives = 129/237 (54.43%), Query Frame = 0
Query:   26 HCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGS--------DECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQ 254
             C L+ G F  F+Q LL  +++ VL++KR RE P RP  +W LD+SKQ +GAG AH+ANL IAI L +   +        D+CA+YF+NF +DTT GVF++YL L++L                    S+ S+                C  +  +G YGD +   +  W +QL+SW+ +I A K ++ ++++     L T    +F P + + +VELV+VMI  P I+N  QF+IQ
Sbjct:   18 ECQLLNGIFATFVQILLGLIAVSVLLLKRQRESPQRPLQIWALDASKQLIGAGFAHVANLAIAILLYKYDHTRSHGDREADQCALYFMNFSMDTTFGVFLNYLFLRML--------------------SNLSNRFG-------------CTSMKTSGDYGDPIE--IRRWTIQLISWISVILAVKLVIASMLFCVNEQLETFTHWMFQPLEMYPKVELVVVMIACPCIMNGFQFWIQ 219          
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|1173928977|gb|OQR82352.1| (hypothetical protein ACHHYP_16186 [Achlya hypogyna])

HSP 1 Score: 162.925 bits (411), Expect = 1.298e-42
Identity = 96/263 (36.50%), Postives = 130/263 (49.43%), Query Frame = 0
Query:   22 VVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLG----GSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLART---------GYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQVGREGGREGGREGGREG 271
            +    C L++G F+ FIQ  L  +++ VLV KRY EHP RPF VW+ D+SKQC+GAG AH ANL IAI L +       +DECA YF+NF LDT+ GV +++ LL                                           C  +LAR          GYYGD ++    IWL QL  WLVII  TK ++  +I     P+N  A  LF P  ++ R+ELVLVMI  P+ +N VQF++        +  ++   E 
Sbjct:  357 ITANECKLLSGPFETFIQLTLGLIAMSVLVCKRYFEHPQRPFRVWLFDASKQCIGAGWAHAANLAIAILLVQYSKVKDNADECAFYFINFTLDTSFGVALNWFLLH------------------------------------------CSVLLARKFHWKALQVPGYYGDPIQT--RIWLTQLGVWLVIIIMTKLIIGRIILWFDTPINAFANWLFEPLSEYPRLELVLVMIACPVTMNIVQFWVTDNFLKKHDSDQKAADEN 575          
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|695468588|ref|XP_009539905.1| (hypothetical protein PHYSODRAFT_536028 [Phytophthora sojae] >gi|348664774|gb|EGZ04614.1| hypothetical protein PHYSODRAFT_536028 [Phytophthora sojae])

HSP 1 Score: 156.377 bits (394), Expect = 1.664e-42
Identity = 94/237 (39.66%), Postives = 129/237 (54.43%), Query Frame = 0
Query:   26 HCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGS--------DECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQ 254
             C L++G F   +Q LL  +++ VLV+KR RE P RP MVW  D+SKQ +GA  AH+ANL+IAI L              D+CA+YF+NF LDTT GVF++Y+LL  +   A              R   TS   P                    G YG  +R  +  WL+Q++SW+++IF+ KF + +LI +   PL   A+ LF P  KH  VEL LVMI  P ++NA+QF+IQ
Sbjct:   15 ECKLLSGSFAAGLQVLLGLIAMSVLVLKRLREVPRRPLMVWAFDASKQMIGATFAHVANLLIAILLYSYQQEQLTDEEAVDQCALYFVNFTLDTTFGVFLNYVLLSGVVLLA-------------HRFGWTSLKTP--------------------GDYGIPIR--VRTWLLQVISWIIVIFSCKFFIASLIVVFEKPLGAFAVLLFKPLDKHPEVELALVMIACPCLMNALQFWIQ 216          
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|1173959519|gb|OQS05744.1| (hypothetical protein THRCLA_02157 [Thraustotheca clavata])

HSP 1 Score: 164.081 bits (414), Expect = 4.308e-42
Identity = 97/255 (38.04%), Postives = 132/255 (51.76%), Query Frame = 0
Query:   21 DVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLG----GSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQVGREGGREGGREGGREG 271
            +     C L +G F+ F+Q  L  +++ VLV KRY EHP R   VW+ D+SKQC+GAGVAH ANL+IAI L  L      +DECA YF+NF LDT+ GV +++ LL         CS        ++R     S   P                   GYYG+ ++    IWL QL  WLVII  TK ++  +IYL  +P+N  A  LF P   +  VELVLVMI  P+ +N +QF+I        +  ++   E 
Sbjct: 1265 NATANDCKLFSGPFETFVQVSLGFIAMSVLVCKRYFEHPRRHVKVWLFDASKQCIGAGVAHAANLMIAILLVSLSKERDNADECAFYFINFTLDTSFGVALNWFLLH--------CS------VLAARKFHWKSLQVP-------------------GYYGEPIQ--TRIWLTQLGMWLVIILTTKLIIGRIIYLFESPINAFANWLFEPLSNYPHVELVLVMIACPVSMNIIQFWITDNFLKKHDSDKKAADEN 1484          
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|566019453|gb|ETI42364.1| (hypothetical protein F443_12487 [Phytophthora parasitica P1569] >gi|567956791|gb|ETK82408.1| hypothetical protein L915_12197 [Phytophthora parasitica] >gi|567985452|gb|ETL35793.1| hypothetical protein L916_12123 [Phytophthora parasitica] >gi|568014853|gb|ETL89030.1| hypothetical protein L917_11961 [Phytophthora parasitica] >gi|568045114|gb|ETM42275.1| hypothetical protein L914_12042 [Phytophthora parasitica] >gi|570323045|gb|ETO70993.1| hypothetical protein F444_12578 [Phytophthora parasitica P1976] >gi|570946851|gb|ETP12108.1| hypothetical protein F441_12451 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 152.14 bits (383), Expect = 6.621e-41
Identity = 92/243 (37.86%), Postives = 133/243 (54.73%), Query Frame = 0
Query:   20 EDVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGS--------DECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQ 254
            ED     C L++G+F + +Q LL  +++ VL  KR+RE P RP MVW  D+SKQ VGA  AH+ANL+IAI L              D+CA+YF+NF LDTT+GVF++Y+LL  +                + R S +S   P                    G YG  +R  +  W++Q++SW+++IF  KFL+  LI     PL   A+ LF P +++  VEL +VMI  P ++NA+QF+IQ
Sbjct:    8 EDGEEKECKLLSGDFAVLLQVLLGFIAISVLAFKRWREVPRRPLMVWAFDASKQMVGATFAHVANLLIAIVLYSYQEELESDEEPVDQCALYFVNFTLDTTLGVFLNYVLLSAV-------------VLLALRFSWSSLKTP--------------------GDYGTPVR--VRTWILQVISWIIVIFTCKFLIAVLIVAFQKPLGAFAVLLFKPLEEYPDVELAIVMIACPCLMNALQFWIQ 215          
The following BLAST results are available for this feature:
BLAST of EWM20672.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100483|gb|EWM20672.1|0.000e+0100.00Protein of unknown function DUF3661, vaculolar tra... [more]
gi|698804794|ref|XP_009835426.1|2.244e-4639.11hypothetical protein H257_10545 [Aphanomyces astac... [more]
gi|698804792|ref|XP_009835425.1|1.683e-4438.46hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|673022780|ref|XP_008865351.1|2.077e-4339.22hypothetical protein H310_03319 [Aphanomyces invad... [more]
gi|813101889|ref|XP_012193648.1|3.461e-4335.40hypothetical protein SPRG_00150 [Saprolegnia paras... [more]
gi|325182680|emb|CCA17135.1|7.442e-4335.86conserved hypothetical protein [Albugo laibachii N... [more]
gi|1173928977|gb|OQR82352.1|1.298e-4236.50hypothetical protein ACHHYP_16186 [Achlya hypogyna... [more]
gi|695468588|ref|XP_009539905.1|1.664e-4239.66hypothetical protein PHYSODRAFT_536028 [Phytophtho... [more]
gi|1173959519|gb|OQS05744.1|4.308e-4238.04hypothetical protein THRCLA_02157 [Thraustotheca c... [more]
gi|566019453|gb|ETI42364.1|6.621e-4137.86hypothetical protein F443_12487 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10032rna10032Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications