EWM20672.1, cds10001 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|585100483|gb|EWM20672.1| (Protein of unknown function DUF3661, vaculolar transmembrane, partial [Nannochloropsis gaditana]) HSP 1 Score: 552.747 bits (1423), Expect = 0.000e+0 Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0
Query: 1 MGLEGREADRLAANGSDPMEDVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQVGREGGREGGREGGREGGR 273
MGLEGREADRLAANGSDPMEDVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQVGREGGREGGREGGREGGR
Sbjct: 1 MGLEGREADRLAANGSDPMEDVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQVGREGGREGGREGGREGGR 273
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|698804794|ref|XP_009835426.1| (hypothetical protein H257_10545 [Aphanomyces astaci] >gi|574109418|gb|ETV74921.1| hypothetical protein H257_10545 [Aphanomyces astaci]) HSP 1 Score: 164.851 bits (416), Expect = 2.244e-46 Identity = 97/248 (39.11%), Postives = 142/248 (57.26%), Query Frame = 0
Query: 11 LAANGSDPMEDVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLG----GSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQ 254
+A N + P + CTL+ G F+ IQ +L ++L VL+ KRY E P RP +W+ D+SKQ +GAGVAH ANL IAI L+ L G+D+CA YF+NF LDTT GV ++YLLL+ L A+ + + T+ +P G YG ++ + +W +QL++WLVII +TK L+ A+I+ PL +A LF PF +VELV+VM+ P+++N +QF+IQ
Sbjct: 1 MATNSTTP---ATIERCTLLNGTFNNLIQVMLGLIALSVLIFKRYHERPRRPLRIWMFDASKQLIGAGVAHAANLAIAITLSGLAKGQTGADQCAFYFVNFTLDTTFGVAVNYLLLKALVYFAV-------------KYNVTALQVP--------------------GDYGHPIQ--VRVWAIQLVTWLVIICSTKILIGAVIFGLETPLGDVAAWLFSPFGDLPKVELVIVMVACPVLMNGLQFWIQ 210
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|698804792|ref|XP_009835425.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574109419|gb|ETV74922.1| hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 159.073 bits (401), Expect = 1.683e-44 Identity = 95/247 (38.46%), Postives = 141/247 (57.09%), Query Frame = 0
Query: 11 LAANGSDPMEDVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLG----GSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYI 253
+A N + P + CTL+ G F+ IQ +L ++L VL+ KRY E P RP +W+ D+SKQ +GAGVAH ANL IAI L+ L G+D+CA YF+NF LDTT GV ++YLLL+ L A+ + + T+ +P G YG ++ + +W +QL++WLVII +TK L+ A+I+ PL +A LF PF +VELV+VM+ P+++N +QF++
Sbjct: 1 MATNSTTP---ATIERCTLLNGTFNNLIQVMLGLIALSVLIFKRYHERPRRPLRIWMFDASKQLIGAGVAHAANLAIAITLSGLAKGQTGADQCAFYFVNFTLDTTFGVAVNYLLLKALVYFAV-------------KYNVTALQVP--------------------GDYGHPIQ--VRVWAIQLVTWLVIICSTKILIGAVIFGLETPLGDVAAWLFSPFGDLPKVELVIVMVACPVLMNGLQFWV 209
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|673022780|ref|XP_008865351.1| (hypothetical protein H310_03319 [Aphanomyces invadans] >gi|574478579|gb|ETW05574.1| hypothetical protein H310_03319 [Aphanomyces invadans]) HSP 1 Score: 156.762 bits (395), Expect = 2.077e-43 Identity = 91/232 (39.22%), Postives = 129/232 (55.60%), Query Frame = 0
Query: 26 HCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGS----DECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYI 253
+C L++G F+ +Q L + L VLV+KR E P RPF VW D+SKQ +GAGVAH ANL IAI L +L S DEC+ YF+NF LDT++GV ++++LL RTT +++L + + P GYYG+ +R +WL QLLSW+ I+ K ++ IY APLN LF P + +VEL+ VM+ P ++NA+QF+I
Sbjct: 12 NCKLISGTFETLVQVGLGIVGLSVLVLKRAYEKPQRPFQVWAYDASKQAIGAGVAHAANLFIAIMLVKLSKSDDAKDECSFYFINFTLDTSLGVLLNWVLL----------------RTT------VAAALHFNWTWLQVP-----------GYYGNPIRT--RVWLTQLLSWIAIVLTAKLVIARFIYAFSAPLNDFGNWLFDPLSNYPKVELLFVMVACPCLMNALQFWI 208
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|813101889|ref|XP_012193648.1| (hypothetical protein SPRG_00150 [Saprolegnia parasitica CBS 223.65] >gi|641541556|gb|KDO35301.1| hypothetical protein SPRG_00150 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 156.377 bits (394), Expect = 3.461e-43 Identity = 97/274 (35.40%), Postives = 134/274 (48.91%), Query Frame = 0
Query: 11 LAANGSDPMEDVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLG----GSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLART---------GYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQVGREGGREGGREGGREG 271
+AAN + +V C L++G F+ FIQ L +++ VLV KRY EHP RPF VW+ D+SKQC+GAG AH ANL IAI L + +DECA YF+NF LDT+ GV +++ LL C +LAR G+YG+ ++ +WL+QL WLVII TK ++ +I P+N A LF P R+ELVLVMI P+ +N VQF++ + + E
Sbjct: 1 MAANTTS----IVANECKLLSGPFETFIQVSLGLIAMSVLVCKRYFEHPQRPFRVWLFDASKQCIGAGWAHAANLTIAILLVQYSTEKENADECAFYFINFTLDTSFGVALNWFLLH------------------------------------------CSVLLARHFHWKALQVPGFYGNPIQT--RVWLIQLGVWLVIIIMTKLIIGRVILWFERPINAFANVLFEPLSDFPRLELVLVMIACPVTMNVVQFWVTDNFLKKHDSDVKAADEN 226
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|325182680|emb|CCA17135.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 156.762 bits (395), Expect = 7.442e-43 Identity = 85/237 (35.86%), Postives = 129/237 (54.43%), Query Frame = 0
Query: 26 HCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGS--------DECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQ 254
C L+ G F F+Q LL +++ VL++KR RE P RP +W LD+SKQ +GAG AH+ANL IAI L + + D+CA+YF+NF +DTT GVF++YL L++L S+ S+ C + +G YGD + + W +QL+SW+ +I A K ++ ++++ L T +F P + + +VELV+VMI P I+N QF+IQ
Sbjct: 18 ECQLLNGIFATFVQILLGLIAVSVLLLKRQRESPQRPLQIWALDASKQLIGAGFAHVANLAIAILLYKYDHTRSHGDREADQCALYFMNFSMDTTFGVFLNYLFLRML--------------------SNLSNRFG-------------CTSMKTSGDYGDPIE--IRRWTIQLISWISVILAVKLVIASMLFCVNEQLETFTHWMFQPLEMYPKVELVVVMIACPCIMNGFQFWIQ 219
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|1173928977|gb|OQR82352.1| (hypothetical protein ACHHYP_16186 [Achlya hypogyna]) HSP 1 Score: 162.925 bits (411), Expect = 1.298e-42 Identity = 96/263 (36.50%), Postives = 130/263 (49.43%), Query Frame = 0
Query: 22 VVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLG----GSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLART---------GYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQVGREGGREGGREGGREG 271
+ C L++G F+ FIQ L +++ VLV KRY EHP RPF VW+ D+SKQC+GAG AH ANL IAI L + +DECA YF+NF LDT+ GV +++ LL C +LAR GYYGD ++ IWL QL WLVII TK ++ +I P+N A LF P ++ R+ELVLVMI P+ +N VQF++ + ++ E
Sbjct: 357 ITANECKLLSGPFETFIQLTLGLIAMSVLVCKRYFEHPQRPFRVWLFDASKQCIGAGWAHAANLAIAILLVQYSKVKDNADECAFYFINFTLDTSFGVALNWFLLH------------------------------------------CSVLLARKFHWKALQVPGYYGDPIQT--RIWLTQLGVWLVIIIMTKLIIGRIILWFDTPINAFANWLFEPLSEYPRLELVLVMIACPVTMNIVQFWVTDNFLKKHDSDQKAADEN 575
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|695468588|ref|XP_009539905.1| (hypothetical protein PHYSODRAFT_536028 [Phytophthora sojae] >gi|348664774|gb|EGZ04614.1| hypothetical protein PHYSODRAFT_536028 [Phytophthora sojae]) HSP 1 Score: 156.377 bits (394), Expect = 1.664e-42 Identity = 94/237 (39.66%), Postives = 129/237 (54.43%), Query Frame = 0
Query: 26 HCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGS--------DECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQ 254
C L++G F +Q LL +++ VLV+KR RE P RP MVW D+SKQ +GA AH+ANL+IAI L D+CA+YF+NF LDTT GVF++Y+LL + A R TS P G YG +R + WL+Q++SW+++IF+ KF + +LI + PL A+ LF P KH VEL LVMI P ++NA+QF+IQ
Sbjct: 15 ECKLLSGSFAAGLQVLLGLIAMSVLVLKRLREVPRRPLMVWAFDASKQMIGATFAHVANLLIAILLYSYQQEQLTDEEAVDQCALYFVNFTLDTTFGVFLNYVLLSGVVLLA-------------HRFGWTSLKTP--------------------GDYGIPIR--VRTWLLQVISWIIVIFSCKFFIASLIVVFEKPLGAFAVLLFKPLDKHPEVELALVMIACPCLMNALQFWIQ 216
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|1173959519|gb|OQS05744.1| (hypothetical protein THRCLA_02157 [Thraustotheca clavata]) HSP 1 Score: 164.081 bits (414), Expect = 4.308e-42 Identity = 97/255 (38.04%), Postives = 132/255 (51.76%), Query Frame = 0
Query: 21 DVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLG----GSDECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQVGREGGREGGREGGREG 271
+ C L +G F+ F+Q L +++ VLV KRY EHP R VW+ D+SKQC+GAGVAH ANL+IAI L L +DECA YF+NF LDT+ GV +++ LL CS ++R S P GYYG+ ++ IWL QL WLVII TK ++ +IYL +P+N A LF P + VELVLVMI P+ +N +QF+I + ++ E
Sbjct: 1265 NATANDCKLFSGPFETFVQVSLGFIAMSVLVCKRYFEHPRRHVKVWLFDASKQCIGAGVAHAANLMIAILLVSLSKERDNADECAFYFINFTLDTSFGVALNWFLLH--------CS------VLAARKFHWKSLQVP-------------------GYYGEPIQ--TRIWLTQLGMWLVIILTTKLIIGRIIYLFESPINAFANWLFEPLSNYPHVELVLVMIACPVSMNIIQFWITDNFLKKHDSDKKAADEN 1484
BLAST of EWM20672.1 vs. NCBI_GenBank
Match: gi|566019453|gb|ETI42364.1| (hypothetical protein F443_12487 [Phytophthora parasitica P1569] >gi|567956791|gb|ETK82408.1| hypothetical protein L915_12197 [Phytophthora parasitica] >gi|567985452|gb|ETL35793.1| hypothetical protein L916_12123 [Phytophthora parasitica] >gi|568014853|gb|ETL89030.1| hypothetical protein L917_11961 [Phytophthora parasitica] >gi|568045114|gb|ETM42275.1| hypothetical protein L914_12042 [Phytophthora parasitica] >gi|570323045|gb|ETO70993.1| hypothetical protein F444_12578 [Phytophthora parasitica P1976] >gi|570946851|gb|ETP12108.1| hypothetical protein F441_12451 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 152.14 bits (383), Expect = 6.621e-41 Identity = 92/243 (37.86%), Postives = 133/243 (54.73%), Query Frame = 0
Query: 20 EDVVVAHCTLVTGEFDMFIQFLLACLSLGVLVVKRYREHPPRPFMVWVLDSSKQCVGAGVAHIANLIIAIFLARLGGS--------DECAMYFLNFFLDTTVGVFISYLLLQLLQRTALACSKPPSPRTTSSRPSSTSSSLPPSSSSPSSPPPSCCAVLARTGYYGDALRPSLSIWLVQLLSWLVIIFATKFLVFALIYLAWAPLNTLALGLFMPFKKHRRVELVLVMIVGPLILNAVQFYIQ 254
ED C L++G+F + +Q LL +++ VL KR+RE P RP MVW D+SKQ VGA AH+ANL+IAI L D+CA+YF+NF LDTT+GVF++Y+LL + + R S +S P G YG +R + W++Q++SW+++IF KFL+ LI PL A+ LF P +++ VEL +VMI P ++NA+QF+IQ
Sbjct: 8 EDGEEKECKLLSGDFAVLLQVLLGFIAISVLAFKRWREVPRRPLMVWAFDASKQMVGATFAHVANLLIAIVLYSYQEELESDEEPVDQCALYFVNFTLDTTLGVFLNYVLLSAV-------------VLLALRFSWSSLKTP--------------------GDYGTPVR--VRTWILQVISWIIVIFTCKFLIAVLIVAFQKPLGAFAVLLFKPLEEYPDVELAIVMIACPCLMNALQFWIQ 215 The following BLAST results are available for this feature:
BLAST of EWM20672.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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