rna1003, rna1003 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1003
Unique Name	rna1003
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2234
Alignment location	CM002456.1:938393..938805 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100112g18.5454.mrna
Orig protein id	gnl\|cribi\|Naga_100112g18.5454
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:938393..938805 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100112g18	gene966	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1003	rna1003-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29671.1	cds1002	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:938393..938805-
coding sequence from alignment at CM002456.1:938393..938805-

mRNA sequence

>rna1003 ID=rna1003|Name=rna1003|organism=Nannochloropsis gaditana|type=mRNA|length=2234bp
GACAGGTCGCGCCGGGACGCATGCATACTTCAAGACAAGTAAATCAATCG
GCTGACCTCCAGTACTCCACAGTGTTGTGGGAGGCGGCCTTTGACGCCAA
TAAAAATGACGACGACACGGAGGAGGCCGACCTCAGCGACGAAGAGATGA
GGGAAGCGCATGGGCCAAGCCTGGAGCACTCAATCATGGTGGCTCGCGGG
GGAAAACTGTGCATACGGGTGCGGGACGACTCATGGATACTGCCGGGGAC
AGTATTTGTCTCTCACTTCGACTCCGTGAGCTCGCAAGGCGGCAAAGGTC
CCATCGAGGAGAGTGGTTTGGTGGGAGTGGGCGATTTTCTGGTCCGGGTC
AATGGATGCGACGTCGTAGGCAAGGGGGCTCGGCACGCTTTGGCTCTGAT
CAAAGATGAGGCCAGCGCCGATTCTGTCAGCCTGACGTTTCGACGGCTGC
AGACGTCCAGCATATCCAGAGAGGGAAACCGAATAAGAAGCGAGGCTGGG
ATCCATTTGACGGAGCAACACCGTGTTCTCATGTTCCGTTATCTGCTGGA
TAGCAAACCTATCGATAAAAGACGCCTGGCCTCTTTGGCCGGCGATGGCA
TCCCAGACGTCGATAAGCATTTGCGGCCATTGGCGTGGCGAATCTTGCTC
TTATATCTGCCTGATGAGGTATCGCTATGGGATGCTCATTTGAAGCAAGA
ACGTGCAATCTACTACCAATTGGTGCAAGAATTGACAATAATGACCGGGC
CCGCAGCGTCATGCCCGCCTTCTGCCTCGGGCCATGTGATTAATGAGAGC
GAGGACCAGAACTTCCGAGGCAGTTGGAGGGCGGGCGACGCCTCACCGCG
GTTAGATACACCGCTATGTGCCTTGTCCTCGGCGCCCTCCCAAGAAGGAG
ACGCCCGGAACACCGCAGGTTCAATGAAAGCCACAGACCCGAATTTGACT
TTTTGCCAGGGGCATCCGGGCTCAGCGCCTCCGCTTCCTCGCAGCGGCCG
TGGCTCTGGCGAGCTGGATGTCTCCCTGGGCTCATCCCAAGACCGGCTGC
CGACCCGGCCTCGCTTCGATGCCGACCGGTCCCTCTTCAATGAAATTCGC
AAAGACGTGGTTCGCACGCACCCAGACCAAAACTTCTACCAGGACCAGAC
CTTTGGGACTGCGCGGTACGATGCTTTGCTACGCATCCTCTTCATTTACG
CCAAGACGAACTCGGGCACCCGGTACATCCAAGGGATGAACGAGCTGGCA
GGCACGCTCTTCTACGTGATGAGCAGAGACTCGGACCAGGAATGGGCAGA
GCACGCGGAGGCTGACACCATGTTCCTCTTCGCGCAACTTATGTCGCAGC
TCAGGGATGTGTTCATCGAGAAGATGGATGAAAGTGACACGGGTATCGAG
AGCAAGTTCGAGCAGCTGGAGGTCCTCCTGGAGCGGCATGATCCCACCCT
ATCAAAGCATTTTCGTATGATCGGGCTTGAGGCCCATTTCTACTCCCTTC
GATGGATCACGACTCTGTTTTGCAGGGAGTTCACGCTGCCAGACACAATC
GCGGTGTGGGACGCCTTGTTCGCAGACAAGGACTTCTCCGATTTCATATT
GTACTTCTGTCTCAGCATGCTGATGGAGCAAAGACAAGAAATGCTACGAT
GTAGCTTCGCGAAATGCTTGCAGTCGCTGCAAGCCTACTCGCCCGAGGCA
GAAATGAAGCGACTTTTACACCGGATGAGGAGCCTGCGGGCGCAGGATTC
CGCCTCCGGATTCCGTGTCGATCGAAGAGTGGGAGAGGCGGCCACACCAT
CCACAAGTCGCGTCCGTAATTACTTTTCTCGTGTATCGTCGCGAATGAGA
GATGACGTGCCAATAGCCCTCGGATCTTTTTCTACAGAGAGCAAGTCCCA
CTTAAAGCGGGCAGGGGCACAGCTGAAAGCCTCTTTCGGCAGTATGCGCA
AGCTAATAGGTGACAGTATGTCTGTCCTTCCTTCTCCAGGAGCCACAGGC
GGAGCGCCATCCACTACATAGCATTCAGATTTATCGATGATCAATCACTG
ATTTCGTGAATCGGAAAAAAAATGTGGTGAAGCTAAATCACCTTATGCGG
CTTTTCAGGATGCAAGACAAAGTCGACGACGATCTCACTCCAGACTGTAA
AATATGGCCGTCAGCAAGAATACAATTGCACAGTATCGACAAACGCATGC
ATGCAAATATATGATTATAGAAAATCATTGTTCT

protein sequence of rna1003

>rna1003-protein ID=rna1003-protein|Name=rna1003|organism=Nannochloropsis gaditana|type=polypeptide|length=99bp
MGTDLIAGHSAHCFQGASAELRCLYDLGDFVDDYATDQYARNDLGLFFFV
LFDLDAKEPWRVEAVPLKLDFCLTRLATGNTHGFENQRNVCFGFNLTLS

mRNA from alignment at CM002456.1:938393..938805-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1003 ID=rna1003|Name=rna1003|organism=Nannochloropsis gaditana|type=mRNA|length=413bp|location=Sequence derived from alignment at CM002456.1:938393..938805- (Nannochloropsis gaditana)
ATGGGTACGGATTTGATTGCGGGCCACAGCGCACATTGCTTTCAAGGTGC
ATCAGCCGAGCTGCGGTGTCTTTACGATCTGGGGGACTTTGTGGATGATT
ATGCCACAGATCAGTACGCACGAAACGATTTGGGCCTGTTTTTCTTCGTG
CTCTTCGACCTTGACGCCAAAGAGCCGTGGCGCGTGGAGGCCGTGCCCTT
GAAGCTAGATTTCTGTTTGACAAGGCTAGCCACAGGTGAAGACTATCAGA
TAATTAAGGACCGTTTCCAGAAAATGTCGGCCAAGTTTGGGACCAGGGTG
TGGGAAGACAAGCAACGTGGGCGACTGGTGTTCGATTTTTGATGAGAGGG
AACACCCATGGATTTGAGAACCAGCGAAACGTCTGCTTCGGCTTTAATCT
GACACTATCATAA

Coding sequence (CDS) from alignment at CM002456.1:938393..938805-

>rna1003 ID=rna1003|Name=rna1003|organism=Nannochloropsis gaditana|type=CDS|length=600bp|location=Sequence derived from alignment at CM002456.1:938393..938805- (Nannochloropsis gaditana)
GGAACACCCATGGATTTGAGAACCAGCGAAACGTCTGCTTCGGCTTTAAT
CTGACACTATCATAAATGGGTACGGATTTGATTGCGGGCCACAGCGCACA
TTGCTTTCAAGGTGCATCAGCCGAGCTGCGGTGTCTTTACGATCTGGGGG
ACTTTGTGGATGATTATGCCACAGATCAGTACGCACGAAACGATTTGGGC
CTGTTTTTCTTCGTGCTCTTCGACCTTGACGCCAAAGAGCCGTGGCGCGT
GGAGGCCGTGCCCTTGAAGCTAGATTTCTGTTTGACAAGGCTAGCCACAG
GGAACACCCATGGATTTGAGAACCAGCGAAACGTCTGCTTCGGCTTTAAT
CTGACACTATCATAAATGGGTACGGATTTGATTGCGGGCCACAGCGCACA
TTGCTTTCAAGGTGCATCAGCCGAGCTGCGGTGTCTTTACGATCTGGGGG
ACTTTGTGGATGATTATGCCACAGATCAGTACGCACGAAACGATTTGGGC
CTGTTTTTCTTCGTGCTCTTCGACCTTGACGCCAAAGAGCCGTGGCGCGT
GGAGGCCGTGCCCTTGAAGCTAGATTTCTGTTTGACAAGGCTAGCCACAG

Synonyms

Publications