EWM29671.1, cds1002 (CDS) Nannochloropsis gaditana

Overview
NameEWM29671.1
Unique Namecds1002
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:938571..938805 -
Alignment locationCM002456.1:938393..938457 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29671.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100112g18.5454.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:938571..938805 -
CM002456.1supercontigCM002456.1:938393..938457 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29671.1 vs. NCBI_GenBank
Match: gi|585112245|gb|EWM29671.1| (hypothetical protein Naga_100112g18 [Nannochloropsis gaditana])

HSP 1 Score: 204.912 bits (520), Expect = 5.034e-67
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
Query:    1 MGTDLIAGHSAHCFQGASAELRCLYDLGDFVDDYATDQYARNDLGLFFFVLFDLDAKEPWRVEAVPLKLDFCLTRLATGNTHGFENQRNVCFGFNLTLS 99
            MGTDLIAGHSAHCFQGASAELRCLYDLGDFVDDYATDQYARNDLGLFFFVLFDLDAKEPWRVEAVPLKLDFCLTRLATGNTHGFENQRNVCFGFNLTLS
Sbjct:    1 MGTDLIAGHSAHCFQGASAELRCLYDLGDFVDDYATDQYARNDLGLFFFVLFDLDAKEPWRVEAVPLKLDFCLTRLATGNTHGFENQRNVCFGFNLTLS 99          
BLAST of EWM29671.1 vs. NCBI_GenBank
Match: gi|953809125|ref|WP_058043162.1| (poly-gamma-glutamate biosynthesis protein [Streptomyces sp. MBT76])

HSP 1 Score: 95.9005 bits (237), Expect = 9.528e-22
Identity = 54/100 (54.00%), Postives = 61/100 (61.00%), Query Frame = 0
Query:    2 GTDLIAGHSAHCFQGASAELRCLYDLGDFVDDYATDQYARNDLGLFFFVLFDLDAKEPWRVEAVPLKLDFCLTRLATGNTHGFENQ--RNVCFGFNLTLS 99
            G  L+AGHSAH F G   + R LYDLGDF+DDYATD   RNDLGL F V F  D   P RVEAVPL LDFC TRLA     G+  +  R  C  F   ++
Sbjct:  211 GATLVAGHSAHVFHGV--QDRVLYDLGDFIDDYATDDRLRNDLGLLFLVSF--DGARPVRVEAVPLALDFCRTRLADEAETGWITRRFRRACAAFGTDVA 306          
BLAST of EWM29671.1 vs. NCBI_GenBank
Match: gi|663371202|ref|WP_030368578.1| (poly-gamma-glutamate biosynthesis protein [Streptomyces roseoverticillatus])

HSP 1 Score: 93.2041 bits (230), Expect = 1.072e-20
Identity = 50/75 (66.67%), Postives = 52/75 (69.33%), Query Frame = 0
Query:    2 GTDLIAGHSAHCFQGASAELRCLYDLGDFVDDYATDQYARNDLGLFFFVLFDLDAKEPWRVEAVPLKLDFCLTRL 76
            G  L+AGHSAH F G +   R LYDLGDFVDDYATD   RNDLGL F V F  D   P RVEAVPL LDFC TRL
Sbjct:  211 GATLVAGHSAHVFHGVAD--RVLYDLGDFVDDYATDDDLRNDLGLLFLVTF--DGTRPARVEAVPLALDFCRTRL 281          
BLAST of EWM29671.1 vs. NCBI_GenBank
Match: gi|1052408393|emb|SCF65289.1| (poly-gamma-glutamate synthesis protein (capsule biosynthesis protein) [Streptomyces sp. Ncost-T10-10d])

HSP 1 Score: 92.8189 bits (229), Expect = 1.864e-20
Identity = 54/103 (52.43%), Postives = 62/103 (60.19%), Query Frame = 0
Query:    2 GTDLIAGHSAHCFQGASAELRCLYDLGDFVDDYATDQYARNDLGLFFFVLFD-LDAKE--PWRVEAVPLKLDFCLTRLATGNTHGFENQR--NVCFGFNLTLS 99
            G  L+AGHSAH F G +   R LYDLGDFVDDYA D   RNDLGL F V  D  DA    P RV A+PL LD+C TRLA G    +  +R    C  F+ T+S
Sbjct:  216 GATLVAGHSAHVFHGIAD--RILYDLGDFVDDYAVDPVLRNDLGLLFLVTLDGPDAAHLVPVRVAAIPLALDYCHTRLARGEDREWIRERLITACAEFDTTVS 316          
BLAST of EWM29671.1 vs. NCBI_GenBank
Match: gi|739843647|ref|WP_037694546.1| (poly-gamma-glutamate biosynthesis protein [Streptomyces atratus])

HSP 1 Score: 92.4337 bits (228), Expect = 2.627e-20
Identity = 54/103 (52.43%), Postives = 61/103 (59.22%), Query Frame = 0
Query:    2 GTDLIAGHSAHCFQGASAELRCLYDLGDFVDDYATDQYARNDLGLFFFVLFD-LDAKE--PWRVEAVPLKLDFCLTRLATGNTHGFENQR--NVCFGFNLTLS 99
            G  L+AGHSAH F G +   R LYDLGDFVDDYA D   RNDLGL F V  D  DA    P +VEAVPL LDFC TRLA G    +  +R    C  F   ++
Sbjct:  216 GATLVAGHSAHVFHGIA--YRILYDLGDFVDDYAVDPVLRNDLGLLFLVTLDGPDAAHLVPAQVEAVPLALDFCHTRLAHGEDREWIRERFTTACAAFGTAVA 316          
BLAST of EWM29671.1 vs. NCBI_GenBank
Match: gi|664400058|ref|WP_030926104.1| (poly-gamma-glutamate biosynthesis protein [Streptomyces sp. NRRL B-24720])

HSP 1 Score: 91.6633 bits (226), Expect = 4.463e-20
Identity = 51/90 (56.67%), Postives = 57/90 (63.33%), Query Frame = 0
Query:    2 GTDLIAGHSAHCFQGASAELRCLYDLGDFVDDYATDQYARNDLGLFFFVLFD-LDAKE--PWRVEAVPLKLDFCLTRLATGNTHGFENQR 88
            G  L+AGHSAH F G +   R LYD+GDFVDDYA D   RNDLGL F V  D  DA    P RVEAVPL LD+C TRLA G    +  +R
Sbjct:  216 GATLVAGHSAHVFHGIAD--RILYDMGDFVDDYAVDPVLRNDLGLLFLVTLDGPDAAHLVPARVEAVPLALDYCHTRLARGEDREWVRER 303          
BLAST of EWM29671.1 vs. NCBI_GenBank
Match: gi|654593749|ref|WP_028060724.1| (poly-gamma-glutamate biosynthesis protein [Solirubrobacter sp. URHD0082])

HSP 1 Score: 91.2781 bits (225), Expect = 5.588e-20
Identity = 50/87 (57.47%), Postives = 58/87 (66.67%), Query Frame = 0
Query:    2 GTDLIAGHSAHCFQGASAELRCLYDLGDFVDDYATDQYARNDLGLFFFVLFDLDAKEPWRVEAVPLKLDFCLTRLATGNTHGFENQR 88
            G  L+AGHSAH   GA  E   LYDLGDFVDDYA D   RNDLGL F V  DL A  P R+EAVPLK++ CLTR+A G+   +  +R
Sbjct:  213 GATLVAGHSAHVPHGA--ERAVLYDLGDFVDDYAVDPRLRNDLGLLFLV--DLGAGGPQRLEAVPLKIERCLTRIARGDDAEWIRRR 295          
BLAST of EWM29671.1 vs. NCBI_GenBank
Match: gi|517382890|ref|WP_018556918.1| (hypothetical protein [Streptomyces sp. BoleA5])

HSP 1 Score: 90.8929 bits (224), Expect = 1.064e-19
Identity = 46/76 (60.53%), Postives = 52/76 (68.42%), Query Frame = 0
Query:    2 GTDLIAGHSAHCFQGASAELRCLYDLGDFVDDYATDQYARNDLGLFFFVLFDLDAKEPWRVEAVPLKLDFCLTRLA 77
            G  L+AG SAH F G +  +  LYDLGDFVDDYATD   RND GL F V FD   + P R+EAVP+ LDFC TRLA
Sbjct:  218 GATLVAGTSAHAFHGVADGV--LYDLGDFVDDYATDPRLRNDRGLLFLVTFDPAGRRPVRLEAVPIALDFCFTRLA 291          
BLAST of EWM29671.1 vs. NCBI_GenBank
Match: gi|1099943059|emb|SFS70998.1| (poly-gamma-glutamate synthesis protein (capsule biosynthesis protein) [Streptomyces sp. ok210])

HSP 1 Score: 90.5077 bits (223), Expect = 1.355e-19
Identity = 49/90 (54.44%), Postives = 55/90 (61.11%), Query Frame = 0
Query:    2 GTDLIAGHSAHCFQGASAELRCLYDLGDFVDDYATDQYARNDLGLFFFVLFDLDAKE---PWRVEAVPLKLDFCLTRLATGNTHGFENQR 88
            G  L+AGHSAH F G +   R LYD+GDFVDDYA D   RNDLGL F V  D        P RVEAVPL LD+C TRLA G    +  +R
Sbjct:  216 GATLVAGHSAHVFHGIAD--RILYDMGDFVDDYAVDPVLRNDLGLLFLVTLDGPDPAHLVPARVEAVPLTLDYCHTRLARGEDREWVRER 303          
BLAST of EWM29671.1 vs. NCBI_GenBank
Match: gi|1183729843|ref|WP_084955287.1| (poly-gamma-glutamate biosynthesis protein [Thermoactinospora rubra])

HSP 1 Score: 90.1225 bits (222), Expect = 1.392e-19
Identity = 50/100 (50.00%), Postives = 59/100 (59.00%), Query Frame = 0
Query:    2 GTDLIAGHSAHCFQGASAELRCLYDLGDFVDDYATDQYARNDLGLFFFVLFDLDAKEPWRVEAVPLKLDFCLTRLATGNTHGFENQR--NVCFGFNLTLS 99
            G  L+AGHSAH F G    +  LYD+GDFVDDY  D   RNDLGL F V   LD + P R+ AVP+ LDFC TRLATG    +  +R    C  F   +S
Sbjct:  216 GASLVAGHSAHVFHGVEGPV--LYDMGDFVDDYIVDPDLRNDLGLIFLVT--LDEQGPVRLRAVPIALDFCYTRLATGREAEWIRRRFAGACAEFGTQVS 311          
The following BLAST results are available for this feature:
BLAST of EWM29671.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112245|gb|EWM29671.1|5.034e-67100.00hypothetical protein Naga_100112g18 [Nannochlorops... [more]
gi|953809125|ref|WP_058043162.1|9.528e-2254.00poly-gamma-glutamate biosynthesis protein [Strepto... [more]
gi|663371202|ref|WP_030368578.1|1.072e-2066.67poly-gamma-glutamate biosynthesis protein [Strepto... [more]
gi|1052408393|emb|SCF65289.1|1.864e-2052.43poly-gamma-glutamate synthesis protein (capsule bi... [more]
gi|739843647|ref|WP_037694546.1|2.627e-2052.43poly-gamma-glutamate biosynthesis protein [Strepto... [more]
gi|664400058|ref|WP_030926104.1|4.463e-2056.67poly-gamma-glutamate biosynthesis protein [Strepto... [more]
gi|654593749|ref|WP_028060724.1|5.588e-2057.47poly-gamma-glutamate biosynthesis protein [Solirub... [more]
gi|517382890|ref|WP_018556918.1|1.064e-1960.53hypothetical protein [Streptomyces sp. BoleA5][more]
gi|1099943059|emb|SFS70998.1|1.355e-1954.44poly-gamma-glutamate synthesis protein (capsule bi... [more]
gi|1183729843|ref|WP_084955287.1|1.392e-1950.00poly-gamma-glutamate biosynthesis protein [Thermoa... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1003rna1003Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications