rna10027, rna10027 (mRNA) Nannochloropsis gaditana

Overview
Namerna10027
Unique Namerna10027
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length573
Alignment locationKK037260.1:38046..39667 -

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Properties
Property NameValue
Productplant
Orig transcript idgnl|cribi|Naga_100760g1.4053.mrna
Orig protein idgnl|cribi|Naga_100760g1.4053
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:38046..39667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100760g1gene9729Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10027rna10027-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20678.1cds9996Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10027 ID=rna10027|Name=rna10027|organism=Nannochloropsis gaditana|type=mRNA|length=573bp
ATGAGTACTGGGAAGAATTCGCCTGCGACAAAGGAGGAGAAAATCACGGT
CTCAGCGGCCGAGATGCACGGCTCGTTTCAGTCGAAATTAACTGCCACAG
CTTCACCCTTTATTCAACGAGAATCTCAACAGTCAAATATGCAAAGTCTA
GGAGACTCTGATTTGAAAAGGATGGTGGAGACGGCAGTGCGTAACCGCGA
TGTTGCTCTTCTTGCCGCCCATTGCAAGATGCTCAGCGGCCGACCAGGCC
TTGCCTCCTTACAGAAGAATATCCAAGTCCACTTGGAGCGCTTGCAGGCT
GAAGACTTGGGGATTCCCCTCTCCAGCGACATCAGAGGCAGGGCTGCGAA
AGATGAAGAGCCTCCACGTCAGCTTTCGAACTCGCTTGAAGGTTTCCCAA
ACTGCTTTCTCTCGTCCTCAGTGAACCTTCCTGCATCCGGCATTGGCCAG
ACTGACACTCCCCACTCTGTCGCGCTCACGCTGGTGCCCGAGGTGCTCGA
GTATTTAAATGCCAAGAACAACGACAAGTCACGCCTCCAGGACATCCTGC
AGAAGTCTGGGTGTCGCATGTAG
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protein sequence of rna10027

>rna10027-protein ID=rna10027-protein|Name=rna10027|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MKAVDLDLALCHTTQGTLQVRLLYHPVQRPEEKTEDHAVSEDLAALEEEL
ATGSLWADADVHDKEEGKGEGEETSTGAVEGARGGQRGILTVEGLQLTGY
TSKDTFWGGSKVFIRLALGTSIVRTVPERTPCQDPAFLDQFTFNIDDRVR
GTSLDVTIIENRALGPAKFLGRASINLSTFTRRPGKTEADWPVYLKGKVV
HVHIRAYFSPLMSQEAS
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mRNA from alignment at KK037260.1:38046..39667-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10027 ID=rna10027|Name=rna10027|organism=Nannochloropsis gaditana|type=mRNA|length=1622bp|location=Sequence derived from alignment at KK037260.1:38046..39667- (Nannochloropsis gaditana)
TCCCTCCCGTCCTCCCTACTTCGTCGCCCGTACAGGGGGACTACTCCCTG
CGAATCGACGACCTGCCCCCCATGAAAGCCGTAGATCTGGATCTGGCCTT
GTGCCACACCACTCAGGGGACCCTCCAGGTCCGCCTCCTCTACCATCCCG
TGCAGCGGCCGGAGGAAAAGACGGAAGGTGGGAGAAAAGAGGGGAGGGGC
AAGGCGGGGGGAGGCGTTCCGATCTGCTCAGGGAGCTGGGAGGCTGGCAA
GGCGTGCACCTTGGGGTCCGTCACGTGTGTCGTCTGGCCCACATGGACCA
GGGGGGTCGCCTTTTCCCTTTATCCTCCTCGGGCCTCGGAATGCTTGATA
CGGCCTATGGGACCTGTGTTTGAGGATCCCGCTGGCGTCGTAGCCTCGAA
CCGGCAAACTTCCGCAAGTTCCGCTCTCTCCCCTGCCGTACCCTCCCTCC
CTCCCTCTCGCGTCTCAGTCACTTCTCTCCTGCTTCCTCTATCCCTCCCT
CCCGCAGACCACGCTGTGTCAGAGGATCTGGCGGCGCTTGAGGAGGAACT
AGCGACAGGGTCGCTGTGGGCCGATGCGGACGTCCACGACAAGGAAGAAG
GAAAAGGAGAAGGAGAGGAGACGTCGACGGGGGCCGTGGAGGGCGCTAGG
GGAGGGCAGAGAGGCATCTTGACGGTGGAGGGGTTGCAATTGACGGGGTA
TACGTCCAAGGTAAGGCGCGGAAGGAGGGAAGGAGAGACAAGGAGGAACG
GAAGGAGGGAGGCATGGCCCTGCCCTTTGATGCCCCCTCTCACGTGGTGG
TCTCTTCGCATCTCCGTGGGTTTTCCCTCCTCATTTGCCATGTCCGTCCA
GGCCTTCGTAGACGGTCCGGAGATTACTGTACCTCCCTCGCTCTCTCACC
TTCCCCCCCCGCACGCCCAGGACACGTTTTGGGGCGGCTCGAAGGTTTTC
ATCCGCCTTGCCCTCGGCACGTCAATCGTTCGCACCGTTCCCGAAAGAAC
ACCCTGCCAGGACCCTGCTTTTCTCGACCAGTTTACCTTCAATGTACGTG
AGGGAGGGAGGGCCGCCCGCGGTGGGAAAAATTGGCTCGAATGGTGTCTA
TTCCGCACGGCGACGGGAGGATGCACGTAACGACTGCCCTTCCTTTTCAT
GATCAGATTGACGACAGGGTTCGCGGCACCAGCTTGGACGTGACCATCAT
CGAAAACCGCGCCCTGGGCCCCGCCAAATTCCTGGGACGAGCTTCCATAA
ACCTTTCCACCTTTACTCGGCGCCCGGGGAAGACAGAGGCGGACTGGCCC
GTCTACCTGAAGGGGAAAGTGGTGCATGTTCACATCCGTGCCTATTTCTC
CCCTCTGATGTCCCAAGAGGCGTCGTGAAGGATGCGTACTGCGCATATTG
TGGCTTTCAGCGGACGGAAAATGTGCGTTGATGACAAAATGGGGTGGCAC
TCGATTTATGTTTCTGCAAGGGGTTGGGTGGTTGTGGAAAAAGGTTGAGG
TAGCAATTTTGGGTAGAACACGGGCGTCTAGGGTACCGAAGAATCAACAT
GCGTTCCATCAGACTTAATTGGCTAGACCAAACTGAAAAAGAAATTTTTA
TAACGACGGGATGAGTTTAAGG
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Coding sequence (CDS) from alignment at KK037260.1:38046..39667-

>rna10027 ID=rna10027|Name=rna10027|organism=Nannochloropsis gaditana|type=CDS|length=2616bp|location=Sequence derived from alignment at KK037260.1:38046..39667- (Nannochloropsis gaditana)
ATTGACGACAGGGTTCGCGGCACCAGCTTGGACGTGACCATCATCGAAAA
CCGCGCCCTGGGCCCCGCCAAATTCCTGGGACGAGCTTCCATAAACCTTT
CCACCTTTACTCGGCGCCCGGGGAAGACAGAGGCGGACTGGCCCGTCTAC
CTGAAGGGGAAAGTGGTGCATGTTCACATCCGTGCCTATTTCTCCCCTCT
GATGTCCCAAGAGGCGTCGTGAGACACGTTTTGGGGCGGCTCGAAGGTTT
TCATCCGCCTTGCCCTCGGCACGTCAATCGTTCGCACCGTTCCCGAAAGA
ACACCCTGCCAGGACCCTGCTTTTCTCGACCAGTTTACCTTCAATACCAC
GCTGTGTCAGAGGATCTGGCGGCGCTTGAGGAGGAACTAGCGACAGGGTC
GCTGTGGGCCGATGCGGACGTCCACGACAAGGAAGAAGGAAAAGGAGAAG
GAGAGGAGACGTCGACGGGGGCCGTGGAGGGCGCTAGGGGAGGGCAGAGA
GGCATCTTGACGGTGGAGGGGTTGCAATTGACGGGGTATACGTCCAAGAT
GAAAGCCGTAGATCTGGATCTGGCCTTGTGCCACACCACTCAGGGGACCC
TCCAGGTCCGCCTCCTCTACCATCCCGTGCAGCGGCCGGAGGAAAAGACG
GAAGATTGACGACAGGGTTCGCGGCACCAGCTTGGACGTGACCATCATCG
AAAACCGCGCCCTGGGCCCCGCCAAATTCCTGGGACGAGCTTCCATAAAC
CTTTCCACCTTTACTCGGCGCCCGGGGAAGACAGAGGCGGACTGGCCCGT
CTACCTGAAGGGGAAAGTGGTGCATGTTCACATCCGTGCCTATTTCTCCC
CTCTGATGTCCCAAGAGGCGTCGTGAGACACGTTTTGGGGCGGCTCGAAG
GTTTTCATCCGCCTTGCCCTCGGCACGTCAATCGTTCGCACCGTTCCCGA
AAGAACACCCTGCCAGGACCCTGCTTTTCTCGACCAGTTTACCTTCAATA
CCACGCTGTGTCAGAGGATCTGGCGGCGCTTGAGGAGGAACTAGCGACAG
GGTCGCTGTGGGCCGATGCGGACGTCCACGACAAGGAAGAAGGAAAAGGA
GAAGGAGAGGAGACGTCGACGGGGGCCGTGGAGGGCGCTAGGGGAGGGCA
GAGAGGCATCTTGACGGTGGAGGGGTTGCAATTGACGGGGTATACGTCCA
AGATGAAAGCCGTAGATCTGGATCTGGCCTTGTGCCACACCACTCAGGGG
ACCCTCCAGGTCCGCCTCCTCTACCATCCCGTGCAGCGGCCGGAGGAAAA
GACGGAAGATTGACGACAGGGTTCGCGGCACCAGCTTGGACGTGACCATC
ATCGAAAACCGCGCCCTGGGCCCCGCCAAATTCCTGGGACGAGCTTCCAT
AAACCTTTCCACCTTTACTCGGCGCCCGGGGAAGACAGAGGCGGACTGGC
CCGTCTACCTGAAGGGGAAAGTGGTGCATGTTCACATCCGTGCCTATTTC
TCCCCTCTGATGTCCCAAGAGGCGTCGTGAGACACGTTTTGGGGCGGCTC
GAAGGTTTTCATCCGCCTTGCCCTCGGCACGTCAATCGTTCGCACCGTTC
CCGAAAGAACACCCTGCCAGGACCCTGCTTTTCTCGACCAGTTTACCTTC
AATACCACGCTGTGTCAGAGGATCTGGCGGCGCTTGAGGAGGAACTAGCG
ACAGGGTCGCTGTGGGCCGATGCGGACGTCCACGACAAGGAAGAAGGAAA
AGGAGAAGGAGAGGAGACGTCGACGGGGGCCGTGGAGGGCGCTAGGGGAG
GGCAGAGAGGCATCTTGACGGTGGAGGGGTTGCAATTGACGGGGTATACG
TCCAAGATGAAAGCCGTAGATCTGGATCTGGCCTTGTGCCACACCACTCA
GGGGACCCTCCAGGTCCGCCTCCTCTACCATCCCGTGCAGCGGCCGGAGG
AAAAGACGGAAGATTGACGACAGGGTTCGCGGCACCAGCTTGGACGTGAC
CATCATCGAAAACCGCGCCCTGGGCCCCGCCAAATTCCTGGGACGAGCTT
CCATAAACCTTTCCACCTTTACTCGGCGCCCGGGGAAGACAGAGGCGGAC
TGGCCCGTCTACCTGAAGGGGAAAGTGGTGCATGTTCACATCCGTGCCTA
TTTCTCCCCTCTGATGTCCCAAGAGGCGTCGTGAGACACGTTTTGGGGCG
GCTCGAAGGTTTTCATCCGCCTTGCCCTCGGCACGTCAATCGTTCGCACC
GTTCCCGAAAGAACACCCTGCCAGGACCCTGCTTTTCTCGACCAGTTTAC
CTTCAATACCACGCTGTGTCAGAGGATCTGGCGGCGCTTGAGGAGGAACT
AGCGACAGGGTCGCTGTGGGCCGATGCGGACGTCCACGACAAGGAAGAAG
GAAAAGGAGAAGGAGAGGAGACGTCGACGGGGGCCGTGGAGGGCGCTAGG
GGAGGGCAGAGAGGCATCTTGACGGTGGAGGGGTTGCAATTGACGGGGTA
TACGTCCAAGATGAAAGCCGTAGATCTGGATCTGGCCTTGTGCCACACCA
CTCAGGGGACCCTCCAGGTCCGCCTCCTCTACCATCCCGTGCAGCGGCCG
GAGGAAAAGACGGAAG
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Synonyms
Publications